Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10631 Trifolium pratense HOM05D007490 ORTHO05D008750 2.1e-110 402.5 224 100.0
Psat6g119920 Pisum sativum HOM05D007490 ORTHO05D008750 9.6e-55 217.6 228 63.6
Medtr0100s0190 Medicago truncatula HOM05D007490 ORTHO05D008750 4.9e-51 205.3 229 62.9
Ca_26016_v3 Cicer arietinum L. HOM05D007490 ORTHO05D008750 9.3e-50 201.1 233 62.7
TPR.G36127 Trifolium pratense HOM05D007490 ORTHO05D008750 1.3e-40 170.6 95 97.9
VMungo0720G0884 Vigna mungo HOM05D007490 ORTHO05D008750 3.1e-37 159.5 228 54.8
Lj5g0014197 Lotus japonicus HOM05D007490 ORTHO05D008750 9.9e-36 154.5 237 53.2
Phvul.007G252900 Phaseolus vulgaris HOM05D007490 ORTHO05D008750 2.2e-35 153.3 235 51.9
arahy.Tifrunner.gnm1.ann1.M65R33 Arachis hypogaea HOM05D007490 ORTHO05D008750 1.8e-32 143.7 248 48.0
Glyma.02G183950 Glycine max HOM05D007490 ORTHO05D008750 2.3e-32 143.3 236 51.3
arahy.Tifrunner.gnm1.ann1.QGQ977 Arachis hypogaea HOM05D007490 ORTHO05D008750 1.7e-27 127.1 292 41.1
Lalb_Chr21g0316471 Lupinus albus HOM05D007490 ORTHO05D008750 3.6e-17 92.8 105 59.0
CiPaw.09G038000 Carya illinoinensis HOM05D007490 ORTHO05D008750 7.9e-17 91.7 236 39.8
Actinidia09331 Actinidia chinensis HOM05D007490 ORTHO05D008750 3.9e-16 89.4 225 36.0
Cpa.g.sc92.48 Carica papaya HOM05D007490 ORTHO05D008750 8.2e-14 81.6 226 34.1
Ciclev10005740m.g Citrus clementina HOM05D007490 ORTHO05D008750 8.2e-14 81.6 230 38.7
COL.COLO4_28277 Corchorus olitorius HOM05D007490 ORTHO05D008750 8.2e-14 81.6 223 35.9
QL07p000297 Quercus lobata HOM05D007490 ORTHO05D008750 2.4e-13 80.1 242 38.0
Hma1.2p1_2266F.1_g318420 Hydrangea macrophylla HOM05D007490 ORTHO05D008750 4.1e-13 79.3 156 41.7
Thecc.05G153900 Theobroma cacao HOM05D007490 ORTHO05D008750 4.1e-13 79.3 223 35.4
Haze_19861 Corylus avellana HOM05D007490 ORTHO05D008750 5.3e-13 79.0 233 35.6
Manes.09G021650 Manihot esculenta HOM05D007490 ORTHO05D008750 1.5e-12 77.4 226 38.1
CsaV3_4G011720 Cucumis sativus L. HOM05D007490 ORTHO05D008750 4.5e-12 75.9 227 36.6
DCAR_013600 Daucus carota HOM05D007490 ORTHO05D008750 7.7e-12 75.1 222 34.2
Dinv39599 Davidia involucrata HOM05D007490 ORTHO05D008750 1.0e-11 74.7 223 35.9
Actinidia39227 Actinidia chinensis HOM05D007490 ORTHO05D008750 1.7e-11 73.9 226 34.5
MD12G1073500 Malus domestica HOM05D007490 ORTHO05D008750 1.7e-11 73.9 225 36.0
Rhsim03G0021300 Rhododendron simsii HOM05D007490 ORTHO05D008750 2.9e-11 73.2 186 37.6
CANSAT80G2830 Cannabis sativa HOM05D007490 ORTHO05D008750 5.0e-11 72.4 235 32.8
Atru.chr1.1094 Acer truncatum HOM05D007490 ORTHO05D008750 8.5e-11 71.6 228 37.7
Duzib128G0116 Durio zibethinus HOM05D007490 ORTHO05D008750 8.5e-11 71.6 223 35.0
ClCG00G005730 Citrullus lanatus HOM05D007490 ORTHO05D008750 1.4e-10 70.9 142 42.3
Lsat_1_v5_gn_8_81320 Lactuca sativa HOM05D007490 ORTHO05D008750 1.4e-10 70.9 223 35.4
Prupe.7G061400 Prunus persica HOM05D007490 ORTHO05D008750 9.4e-10 68.2 231 33.3
TWI74G0148 Tripterygium wilfordii HOM05D007490 ORTHO05D008750 1.6e-09 67.4 94 52.1
CARHR167640 Cardamine hirsuta HOM05D007490 ORTHO05D008750 3.6e-09 66.2 228 37.3
Oeu033005.1 Olea europaea HOM05D007490 ORTHO05D008750 7.9e-09 65.1 230 34.8
TAR636G1914 Trochodendron aralioides HOM05D007490 ORTHO05D008750 1.4e-08 64.3 227 32.2
Thhalv10017790m.g Eutrema salsugineum HOM05D007490 ORTHO05D008750 1.8e-08 63.9 225 34.2
Gorai.007G360400 Gossypium raimondii HOM05D007490 ORTHO05D008750 3.0e-08 63.2 173 36.4
Gohir.A11G312500 Gossypium hirsutum HOM05D007490 ORTHO05D008750 3.9e-08 62.8 165 37.6
Carub.0005s2428 Capsella rubella HOM05D007490 ORTHO05D008750 5.1e-08 62.4 226 33.2
Eucgr.A02350 Eucalyptus grandis HOM05D007490 ORTHO05D008750 5.1e-08 62.4 134 38.1
PGR004G2251 Punica granatum HOM05D007490 ORTHO05D008750 5.1e-08 62.4 169 32.5
Sc13g0001780 Simmondsia chinensis HOM05D007490 ORTHO05D008750 5.1e-08 62.4 93 44.1
AT3G57440 Arabidopsis thaliana HOM05D007490 ORTHO05D008750 6.7e-08 62.0 232 35.8
Sopen10g030750 Solanum pennellii HOM05D015445 ORTHO05D008750 6.7e-08 62.0 133 38.3
Gohir.D11G329000 Gossypium hirsutum HOM05D007490 ORTHO05D008750 8.8e-08 61.6 173 37.0
Sp5g05160 Schrenkiella parvula HOM05D007490 ORTHO05D008750 1.1e-07 61.2 224 35.3
Sed0009481 Sechium edule HOM05D007490 ORTHO05D008750 1.1e-07 61.2 244 32.8
Solyc10g080140.2 Solanum lycopersicum HOM05D015445 ORTHO05D008750 1.5e-07 60.8 134 38.8
AL5G39010 Arabidopsis lyrata HOM05D007490 ORTHO05D008750 4.4e-07 59.3 228 36.0
Thhalv10006439m.g Eutrema salsugineum HOM05D007490 ORTHO05D008750 7.4e-07 58.5 228 35.5
A09p50330 Brassica napus HOM05D007490 ORTHO05D008750 2.8e-06 56.6 230 37.0
C03p27950 Brassica napus HOM05D007490 ORTHO05D008750 2.8e-06 56.6 224 32.6
BraA09t40485Z Brassica rapa HOM05D014273 ORTHO05D008750 2.8e-06 56.6 230 37.0
BcaNung06245 Brassica carinata HOM05D007490 ORTHO05D008750 6.3e-06 55.5 223 34.1
BolC3t15167H Brassica oleracea HOM05D007490 ORTHO05D008750 6.3e-06 55.5 223 34.1
FAN09G1636 Fragaria x ananassa HOM05D007490 ORTHO05D008750 8.2e-06 55.1 91 42.9


User provided reference genes

Program Settings