Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10616 Trifolium pratense HOM05D005937 ORTHO05D008151 0.0e+00 1674.8 851 100.0
Medtr3g071440 Medicago truncatula HOM05D005937 ORTHO05D008151 0.0e+00 1495.7 872 86.8
Ca_15144_v3 Cicer arietinum L. HOM05D005937 ORTHO05D008151 0.0e+00 1483.0 879 85.7
Psat5g130440 Pisum sativum HOM05D005937 ORTHO05D008151 0.0e+00 1441.0 883 84.9
Phvul.001G244900 Phaseolus vulgaris HOM05D005937 ORTHO05D008151 0.0e+00 1355.5 872 78.3
Glyma.11G231700 Glycine max HOM05D005937 ORTHO05D008151 0.0e+00 1350.5 878 79.6
Glyma.18G025500 Glycine max HOM05D005937 ORTHO05D008151 0.0e+00 1330.9 870 77.2
Lj6g0019628 Lotus japonicus HOM05D005937 ORTHO05D008151 0.0e+00 1313.5 849 77.5
VMungo1383G1379 Vigna mungo HOM05D005937 ORTHO05D008151 0.0e+00 1299.6 864 75.7
Lalb_Chr23g0277021 Lupinus albus HOM05D005937 ORTHO05D008151 0.0e+00 1284.2 890 72.2
arahy.Tifrunner.gnm1.ann1.6RBS9T Arachis hypogaea HOM05D005937 ORTHO05D008151 0.0e+00 1266.5 827 74.7
arahy.Tifrunner.gnm1.ann1.0WF02T Arachis hypogaea HOM05D005937 ORTHO05D008151 0.0e+00 1263.4 827 74.4
QL08p063536 Quercus lobata HOM05D005937 ORTHO05D008151 0.0e+00 1176.4 874 67.6
MD07G1224900 Malus domestica HOM05D005937 ORTHO05D008151 0.0e+00 1167.1 875 67.4
CiPaw.02G194600 Carya illinoinensis HOM05D005937 ORTHO05D008151 0.0e+00 1166.8 819 69.5
Haze_17256 Corylus avellana HOM05D005937 ORTHO05D008151 0.0e+00 1165.2 874 68.9
Potri.010G185800 Populus trichocarpa HOM05D005937 ORTHO05D008151 0.0e+00 1149.4 821 69.3
Atru.chr12.85 Acer truncatum HOM05D005937 ORTHO05D008151 0.0e+00 1144.4 818 68.5
Duzib114G0783 Durio zibethinus HOM05D005937 ORTHO05D008151 0.0e+00 1142.9 874 67.0
Manes.10G010100 Manihot esculenta HOM05D005937 ORTHO05D008151 0.0e+00 1138.3 820 68.7
FvH4_7g24830 Fragaria vesca HOM05D005937 ORTHO05D008151 0.0e+00 1135.9 817 67.6
GSVIVG01032777001 Vitis vinifera HOM05D005937 ORTHO05D008151 0.0e+00 1135.6 815 68.6
RcHm_v2.0_Chr1g0370701 Rosa chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1134.8 872 64.3
FAN01G2918 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1132.5 817 67.7
Ciclev10030686m.g Citrus clementina HOM05D005937 ORTHO05D008151 0.0e+00 1130.2 876 66.0
FAN06G2004 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1130.2 817 67.6
Thecc.10G012700 Theobroma cacao HOM05D005937 ORTHO05D008151 0.0e+00 1117.4 875 66.4
Eucgr.J00183 Eucalyptus grandis HOM05D005937 ORTHO05D008151 0.0e+00 1116.3 814 66.7
Hma1.2p1_0523F.1_g172080 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 0.0e+00 1116.3 795 68.4
FAN03G2902 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1114.0 823 66.3
Rhsim09G0179300 Rhododendron simsii HOM05D005937 ORTHO05D008151 0.0e+00 1113.2 872 65.0
TWI09G1402 Tripterygium wilfordii HOM05D005937 ORTHO05D008151 0.0e+00 1112.4 819 66.7
Nn2g10945 Nelumbo nucifera HOM05D005937 ORTHO05D008151 0.0e+00 1111.7 818 67.0
Sabra10G0143100 Salix brachista HOM05D005937 ORTHO05D008151 0.0e+00 1109.7 884 63.5
Prupe.2G253500 Prunus persica HOM05D005937 ORTHO05D008151 0.0e+00 1109.4 870 64.1
Actinidia00667 Actinidia chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1108.6 864 64.6
CSS0046957 Camellia sinensis var. sinensis HOM05D005937 ORTHO05D008151 0.0e+00 1106.7 887 63.6
Gorai.011G291300 Gossypium raimondii HOM05D005937 ORTHO05D008151 0.0e+00 1106.3 816 67.0
Gohir.A10G239000 Gossypium hirsutum HOM05D005937 ORTHO05D008151 0.0e+00 1103.2 819 66.9
TAR633G1521 Trochodendron aralioides HOM05D005937 ORTHO05D008151 0.0e+00 1103.2 814 67.2
ClCG11G006010 Citrullus lanatus HOM05D005937 ORTHO05D008151 0.0e+00 1097.4 816 65.8
CsaV3_6G001960 Cucumis sativus L. HOM05D005937 ORTHO05D008151 0.0e+00 1094.7 817 66.0
CANSAT56G2579 Cannabis sativa HOM05D005937 ORTHO05D008151 0.0e+00 1088.9 817 67.0
Migut.F01477 Erythranthe guttata HOM05D005937 ORTHO05D008151 0.0e+00 1087.0 813 64.8
Nitab4.5_0000058g0250 Nicotiana tabacum HOM05D005937 ORTHO05D008151 0.0e+00 1082.4 813 64.5
Sed0020446 Sechium edule HOM05D005937 ORTHO05D008151 0.0e+00 1075.1 810 65.2
Nitab4.5_0000969g0030 Nicotiana tabacum HOM05D005937 ORTHO05D008151 5.8e-312 1073.5 815 63.9
Hund15900 Selenicereus undatus HOM05D005937 ORTHO05D008151 1.2e-311 1072.8 819 63.9
Solyc06g051080.4 Solanum lycopersicum HOM05D005937 ORTHO05D008151 3.4e-310 1068.1 814 64.3
Sopen06g016900 Solanum pennellii HOM05D005937 ORTHO05D008151 2.9e-309 1065.1 814 64.0
Duzib106G1087 Durio zibethinus HOM05D005937 ORTHO05D008151 1.4e-308 1062.8 874 63.8
Ah.16g103770 Amaranthus hybridus HOM05D005937 ORTHO05D008151 1.9e-308 1062.4 817 63.6
CAN.G19.18 Capsicum annuum HOM05D005937 ORTHO05D008151 1.6e-307 1059.3 814 64.1
Lj1C959G18 Lonicera japonica HOM05D005937 ORTHO05D008151 8.6e-306 1053.5 749 68.5
Thhalv10005783m.g Eutrema salsugineum HOM05D005937 ORTHO05D008151 2.5e-305 1052.0 821 63.7
EL10Ac2g04871 Beta vulgaris HOM05D005937 ORTHO05D008151 8.0e-304 1047.0 864 60.0
Cfa001293 Carpinus fangiana HOM05D005937 ORTHO05D008151 1.8e-303 1045.8 657 76.1
A09p48990 Brassica napus HOM05D005937 ORTHO05D008151 2.3e-303 1045.4 869 61.1
BraA09t40354Z Brassica rapa HOM05D005937 ORTHO05D008151 2.3e-303 1045.4 869 61.1
C08p31350 Brassica napus HOM05D005937 ORTHO05D008151 5.2e-303 1044.3 870 60.8
AL5G37310 Arabidopsis lyrata HOM05D005937 ORTHO05D008151 6.8e-303 1043.9 821 63.0
CARHR166110 Cardamine hirsuta HOM05D005937 ORTHO05D008151 2.6e-302 1042.0 877 60.5
vmacro10023 Vaccinium macrocarpon HOM05D005937 ORTHO05D008151 3.4e-302 1041.6 908 59.1
AT3G56040 Arabidopsis thaliana HOM05D005937 ORTHO05D008151 4.4e-302 1041.2 821 62.6
Cpa.g.sc19.149 Carica papaya HOM05D005937 ORTHO05D008151 5.8e-302 1040.8 851 61.1
Sp5g06500 Schrenkiella parvula HOM05D005937 ORTHO05D008151 2.2e-301 1038.9 821 63.3
Aqoxy4G02431 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 3.7e-301 1038.1 812 63.5
Carub.0005s2277 Capsella rubella HOM05D005937 ORTHO05D008151 4.9e-301 1037.7 820 62.7
HanXRQChr07g0203141 Helianthus annuus HOM05D005937 ORTHO05D008151 4.9e-301 1037.7 870 61.0
THA.LOC104824329 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 6.4e-301 1037.3 870 59.9
Oeu011112.1 Olea europaea HOM05D005937 ORTHO05D008151 2.7e-299 1031.9 901 58.5
THA.LOC104811372 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 7.8e-299 1030.4 820 62.4
PSO017G4998 Papaver somniferum HOM05D005937 ORTHO05D008151 5.0e-298 1027.7 822 62.3
Aa31LG10G10960 Aethionema arabicum HOM05D005937 ORTHO05D008151 1.9e-297 1025.8 822 62.7
PSO170G3027 Papaver somniferum HOM05D005937 ORTHO05D008151 7.3e-297 1023.8 822 61.9
Lsat_1_v5_gn_2_123720 Lactuca sativa HOM05D005937 ORTHO05D008151 6.2e-296 1020.8 829 61.5
DCAR_024814 Daucus carota HOM05D005937 ORTHO05D008151 5.8e-294 1014.2 794 63.7
unitig_60.g25670 Utricularia gibba HOM05D005937 ORTHO05D008151 2.2e-293 1012.3 832 60.0
FAN10G1632 Fragaria x ananassa HOM05D005937 ORTHO05D008151 4.9e-293 1011.1 837 61.6
AUR62012278 Chenopodium quinoa HOM05D005937 ORTHO05D008151 3.2e-292 1008.4 817 60.6
ECA238G3710 Erigeron canadensis HOM05D005937 ORTHO05D008151 9.2e-292 1006.9 865 60.5
PGR044G1548 Punica granatum HOM05D005937 ORTHO05D008151 4.4e-286 988.0 818 61.5
Dinv21757 Davidia involucrata HOM05D005937 ORTHO05D008151 1.3e-285 986.5 828 61.7
Cc02_g06180 Coffea canephora HOM05D005937 ORTHO05D008151 5.6e-281 971.1 642 72.7
AUR62022920 Chenopodium quinoa HOM05D005937 ORTHO05D008151 5.8e-278 961.1 736 63.9
ATR0174G021 Amborella trichopoda HOM05D005937 ORTHO05D008151 9.9e-278 960.3 835 58.0
Os05g0468600 Oryza sativa ssp. japonica HOM05D005937 ORTHO05D008151 1.7e-277 959.5 795 57.2
Gohir.D10G250900 Gossypium hirsutum HOM05D005937 ORTHO05D008151 2.0e-270 936.0 697 66.9
Zm00001eb351780 Zea mays HOM05D005937 ORTHO05D008151 2.0e-270 936.0 796 56.7
MELO3C008313.2 Cucumis melo HOM05D005937 ORTHO05D008151 2.6e-270 935.6 709 66.4
MBI15_g40751_MAGBIO Magnolia biondii HOM05D005937 ORTHO05D008151 2.4e-268 929.1 829 58.9
MD01G1156200 Malus domestica HOM05D005937 ORTHO05D008151 2.4e-268 929.1 696 66.2
Peaxi162Scf00284g00620 Petunia axillaris HOM05D005937 ORTHO05D008151 7.1e-268 927.5 818 58.3
COL.COLO4_25772 Corchorus olitorius HOM05D005937 ORTHO05D008151 6.7e-258 894.4 789 60.1
Sc10g0002520 Simmondsia chinensis HOM05D005937 ORTHO05D008151 3.2e-244 849.0 650 65.4
AagrBONN_evm.TU.Sc2ySwM_368.2798 Anthoceros agrestis HOM05D005937 ORTHO05D008151 1.4e-236 823.5 824 49.2
SGA_v2.0_scaffold395G50730 Striga asiatica HOM05D005937 ORTHO05D008151 9.7e-233 810.8 678 61.7
Mapoly0007s0127 Marchantia polymorpha HOM05D005937 ORTHO05D008151 7.7e-230 801.2 855 47.4
Pp3c22_15610 Physcomitrium patens HOM05D005937 ORTHO05D008151 1.0e-226 790.8 833 48.4
SMO141G0067 Selaginella moellendorffii HOM05D005937 ORTHO05D008151 9.4e-212 741.1 747 50.2
HPP92_007567 Vanilla planifolia HOM05D005937 ORTHO05D008151 2.0e-198 696.8 762 50.1
CBR_g61489 Chara braunii HOM05D005937 ORTHO05D008151 2.3e-189 666.8 566 53.9
Actinidia00964 Actinidia chinensis HOM05D005937 ORTHO05D008151 1.3e-173 614.4 478 64.4
Hma1.2p1_0523F.1_g172070 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 2.9e-168 596.7 469 63.8
PRCOL_00004696 Prasinoderma coloniale HOM05D005937 ORTHO05D008151 2.2e-160 570.5 798 40.1
Cre12.g554250 Chlamydomonas reinhardtii HOM05D005937 ORTHO05D008151 2.4e-159 567.0 911 37.8
CDE04G2743 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 9.3e-143 511.9 549 51.2
HPP92_007578 Vanilla planifolia HOM05D005937 ORTHO05D008151 1.3e-112 411.8 381 54.3
RhsimUnG0153700 Rhododendron simsii HOM05D005937 ORTHO05D008151 1.6e-110 404.8 297 67.3
Rhsim12G0073000 Rhododendron simsii HOM05D005937 ORTHO05D008151 2.5e-103 380.9 296 64.9
BcaB01g00040 Brassica carinata HOM05D005937 ORTHO05D008151 6.5e-96 356.3 395 50.9
CDE04G2646 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 2.0e-92 344.7 248 65.3
SEGI_34891 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 7.7e-89 332.8 245 66.5
Aqoxy1G01260 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 1.1e-87 328.9 192 78.1
Aqoxy2G01148 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 1.5e-87 328.6 188 79.3
Aqoxy4G01451 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 7.2e-87 326.2 186 79.6
HPP92_007579 Vanilla planifolia HOM05D005937 ORTHO05D008151 3.3e-79 300.8 217 63.1
MCO05G015 Micromonas commoda HOM05D005937 ORTHO05D008151 4.0e-77 293.9 416 38.9
BolC8t50756H Brassica oleracea HOM05D005937 ORTHO05D008151 2.3e-69 268.1 199 61.8
Ah.00g001390 Amaranthus hybridus HOM05D005937 ORTHO05D008151 6.4e-51 206.8 147 61.2
SEGI_09306 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 6.0e-41 173.7 144 51.4
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 1.9e-26 125.6 165 40.0
Aqoxy4G01461 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 2.7e-17 95.1 171 37.4
Rhsim12G0072900 Rhododendron simsii HOM05D005937 ORTHO05D008151 7.7e-12 77.0 52 75.0
SEGI_37602 Sequoiadendron giganteum HOM05D005937 ORTHO05D026713 3.9e-08 64.7 151 33.1
FvH4_1g28571 Fragaria vesca HOM05D028679 ORTHO05D046132 2.8e-06 58.5 84 48.8


User provided reference genes

Program Settings