Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 1.3e-76 289.7 146 100.0
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 2.6e-61 238.8 147 85.7
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 7.4e-56 220.7 149 81.2
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 1.1e-40 170.2 146 67.1
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 2.4e-38 162.5 147 65.3
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 4.1e-38 161.8 146 65.8
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 1.6e-34 149.8 147 60.5
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 4.3e-32 141.7 151 63.6
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 6.9e-30 134.4 147 57.1
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 4.4e-24 115.2 149 54.4
Phvul.003G085100 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 5.7e-24 114.8 149 53.0
Lj4g0015289 Lotus japonicus HOM05D004793 ORTHO05D004423 2.2e-23 112.8 156 50.6
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 2.2e-23 112.8 157 51.6
VMungo1215G0069 Vigna mungo HOM05D004793 ORTHO05D004423 2.4e-22 109.4 149 48.3
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 3.1e-22 109.0 148 54.1
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 3.1e-22 109.0 161 48.4
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 7.7e-21 104.4 149 51.0
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 1.7e-20 103.2 146 52.1
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 3.8e-20 102.1 146 52.1
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 3.0e-17 92.4 149 43.6
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 1.1e-16 90.5 149 45.0
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 1.5e-16 90.1 146 47.9
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 2.6e-16 89.4 166 44.0
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 3.3e-16 89.0 165 40.6
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 4.4e-16 88.6 148 43.2
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 7.4e-16 87.8 147 46.3
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 9.7e-16 87.4 146 42.5
arahy.Tifrunner.gnm1.ann1.TPLS1U Arachis hypogaea HOM05D004793 ORTHO05D004423 1.3e-15 87.0 157 46.5
arahy.Tifrunner.gnm1.ann1.QXLV0V Arachis hypogaea HOM05D004793 ORTHO05D004423 1.7e-15 86.7 157 45.9
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 2.2e-15 86.3 145 48.3
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 2.8e-15 85.9 145 46.9
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 4.8e-15 85.1 146 41.8
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 6.3e-15 84.7 148 45.3
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 3.1e-14 82.4 164 42.7
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 7.0e-14 81.3 144 42.4
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 1.6e-13 80.1 146 40.4
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 1.6e-13 80.1 146 41.1
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 1.3e-12 77.0 149 42.3
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 1.3e-12 77.0 149 42.3
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 1.7e-12 76.6 161 43.5
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 5.0e-12 75.1 149 40.3
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 8.5e-12 74.3 150 45.3
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 1.1e-11 73.9 160 38.8
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 1.9e-11 73.2 147 40.1
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 1.9e-11 73.2 153 39.2
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 3.2e-11 72.4 154 39.0
RcHm_v2.0_Chr5g0000811 Rosa chinensis HOM05D020126 ORTHO05D004423 3.2e-11 72.4 164 39.0
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 3.2e-11 72.4 150 39.3
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 7.2e-11 71.2 149 36.9
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 9.4e-11 70.9 148 41.9
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 1.6e-10 70.1 153 39.9
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 2.1e-10 69.7 165 40.0
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 2.1e-10 69.7 149 37.6
arahy.Tifrunner.gnm1.ann1.I085MR Arachis hypogaea HOM05D004793 ORTHO05D038859 2.7e-10 69.3 166 38.6
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 2.7e-10 69.3 150 38.7
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 2.7e-10 69.3 147 40.8
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 4.7e-10 68.6 146 39.0
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 8.0e-10 67.8 150 37.3
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 1.8e-09 66.6 147 38.8
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 1.8e-09 66.6 147 40.1
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 1.8e-09 66.6 147 40.1
FvH4_3g00600 Fragaria vesca HOM05D020126 ORTHO05D004423 2.3e-09 66.2 163 36.8
FAN21G2945 Fragaria x ananassa HOM05D020126 ORTHO05D004423 2.3e-09 66.2 161 37.9
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 2.3e-09 66.2 150 37.3
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 3.0e-09 65.9 147 37.4
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 3.0e-09 65.9 149 37.6
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 5.2e-09 65.1 147 36.7
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 5.2e-09 65.1 157 36.3
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 5.2e-09 65.1 153 36.6
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 5.2e-09 65.1 147 33.3
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 6.7e-09 64.7 165 40.0
Cc09_g00630 Coffea canephora HOM05D000222 ORTHO05D003997 8.8e-09 64.3 144 33.3
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 8.8e-09 64.3 149 35.6
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 1.2e-08 63.9 147 38.1
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 2.0e-08 63.2 146 38.4
Medtr5g097300 Medicago truncatula HOM05D004793 ORTHO05D004423 2.0e-08 63.2 146 36.3
DCAR_002230 Daucus carota HOM05D004793 ORTHO05D004423 2.6e-08 62.8 154 38.3
TPR.G1320 Trifolium pratense HOM05D004793 ORTHO05D004423 2.6e-08 62.8 148 37.2
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 3.3e-08 62.4 156 37.2
CiPaw.03G278900 Carya illinoinensis HOM05D004793 ORTHO05D004423 3.3e-08 62.4 148 38.5
Lj2P260T34 Lonicera japonica HOM05D004793 ORTHO05D004423 3.3e-08 62.4 155 35.5
Eucgr.E03889 Eucalyptus grandis HOM05D004793 ORTHO05D004423 4.4e-08 62.0 148 37.2
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 4.4e-08 62.0 146 34.9
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 4.4e-08 62.0 146 34.9
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 4.4e-08 62.0 146 33.6
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 4.4e-08 62.0 148 33.8
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 4.4e-08 62.0 150 36.0
Glyma.14G007800 Glycine max HOM05D004793 ORTHO05D004423 5.7e-08 61.6 149 40.3
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 5.7e-08 61.6 146 38.4
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 7.5e-08 61.2 146 33.6
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 7.5e-08 61.2 147 40.1
CAN.G696.14 Capsicum annuum HOM05D018828 ORTHO05D004423 9.7e-08 60.8 144 41.0
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 9.7e-08 60.8 148 37.2
Solyc11g012520.1 Solanum lycopersicum HOM05D018828 ORTHO05D004423 9.7e-08 60.8 142 40.1
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 1.3e-07 60.5 145 39.3
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 1.3e-07 60.5 145 39.3
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.3e-07 60.5 165 38.8
arahy.Tifrunner.gnm1.ann1.FQ33KH Arachis hypogaea HOM05D004793 ORTHO05D038859 1.7e-07 60.1 170 34.7
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.7e-07 60.1 46 65.2
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.7e-07 60.1 46 65.2
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.2e-07 59.7 153 37.3
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 2.2e-07 59.7 146 37.0
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 2.8e-07 59.3 150 37.3
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 3.7e-07 58.9 150 39.3
Ca_06456_v3 Cicer arietinum L. HOM05D004793 ORTHO05D004423 3.7e-07 58.9 64 50.0
Migut.M00035 Erythranthe guttata HOM05D004793 ORTHO05D004423 3.7e-07 58.9 45 66.7
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 3.7e-07 58.9 147 36.7
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 4.8e-07 58.5 148 37.8
FvH4_3g24120 Fragaria vesca HOM05D017646 ORTHO05D004423 6.3e-07 58.2 142 35.2
FAN11G0385 Fragaria x ananassa HOM05D017646 ORTHO05D004423 6.3e-07 58.2 142 35.2
Psat2g004520 Pisum sativum HOM05D004793 ORTHO05D004423 6.3e-07 58.2 151 34.4
RcHm_v2.0_Chr5g0000821 Rosa chinensis HOM05D020126 ORTHO05D004423 6.3e-07 58.2 149 35.6
DCAR_030858 Daucus carota HOM05D004793 ORTHO05D004423 8.2e-07 57.8 140 37.1
FAN21G3338 Fragaria x ananassa HOM05D017646 ORTHO05D004423 8.2e-07 57.8 142 33.8
FAN25G0781 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.1e-06 57.4 142 34.5
FAN25G3449 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.1e-06 57.4 142 34.5
SGA_v2.0_scaffold7G03722 Striga asiatica HOM05D026462 ORTHO05D004423 1.1e-06 57.4 134 29.9
FAN16G3200 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.4e-06 57.0 142 35.2
Glyma.02G305500 Glycine max HOM05D004793 ORTHO05D004423 1.8e-06 56.6 151 37.1
Sc17g0007950 Simmondsia chinensis HOM05D004793 ORTHO05D004423 1.8e-06 56.6 92 43.5
Oeu063642.1 Olea europaea HOM05D004793 ORTHO05D004423 2.4e-06 56.2 149 34.9
VMungo0647G0475 Vigna mungo HOM05D004793 ORTHO05D004423 2.4e-06 56.2 152 39.5
ATR0712G036 Amborella trichopoda HOM05D004793 ORTHO05D004423 3.1e-06 55.8 146 36.3
Lalb_Chr04g0247291 Lupinus albus HOM05D004793 ORTHO05D004423 3.1e-06 55.8 146 34.9
Lalb_Chr04g0247481 Lupinus albus HOM05D004793 ORTHO05D004423 3.1e-06 55.8 146 34.9
CSS0013569 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 5.3e-06 55.1 147 36.1
RcHm_v2.0_Chr5g0042781 Rosa chinensis HOM05D017646 ORTHO05D004423 7.0e-06 54.7 142 35.9
Oeu029974.1 Olea europaea HOM05D027131 ORTHO05D013900 9.1e-06 54.3 65 49.2


User provided reference genes

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