Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 1.4e-191 672.9 387 100.0
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 2.6e-153 545.8 389 84.8
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 1.7e-152 543.1 392 82.7
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 2.6e-116 422.9 399 65.9
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 3.3e-111 406.0 387 65.4
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 3.6e-110 402.5 311 74.6
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 1.3e-99 367.5 396 63.6
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 1.1e-98 364.4 395 62.5
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 5.3e-93 345.5 391 58.6
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 1.7e-91 340.5 388 58.8
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 5.4e-90 335.5 388 58.0
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 2.4e-85 320.1 389 56.0
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 1.4e-82 310.8 388 55.4
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 5.4e-82 308.9 403 57.1
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 1.2e-81 307.8 388 55.9
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 3.0e-80 303.1 396 53.5
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 6.7e-80 302.0 393 57.0
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.1e-77 294.7 386 53.6
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 1.2e-76 291.2 396 53.0
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 1.5e-76 290.8 400 52.8
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 2.6e-76 290.0 398 51.3
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 8.4e-75 285.0 393 50.4
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 5.5e-74 282.3 392 55.1
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 9.3e-74 281.6 402 52.0
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 1.2e-73 281.2 390 51.5
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 1.6e-73 280.8 397 52.4
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.6e-73 280.8 400 52.2
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 3.0e-72 276.6 333 56.8
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 3.9e-72 276.2 398 50.0
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 5.1e-72 275.8 394 51.5
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 5.1e-72 275.8 392 52.8
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.7e-72 275.0 388 51.0
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 2.5e-71 273.5 393 49.4
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 7.4e-71 271.9 390 50.3
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 1.6e-70 270.8 399 50.1
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 3.7e-70 269.6 325 52.3
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 1.1e-69 268.1 397 54.9
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 2.4e-69 266.9 393 48.3
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 3.1e-69 266.5 339 52.5
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 3.1e-69 266.5 402 54.7
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 4.0e-69 266.2 402 47.3
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 5.3e-69 265.8 323 53.3
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 5.3e-69 265.8 409 53.5
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 6.9e-69 265.4 407 46.4
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 9.0e-69 265.0 401 48.6
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 5.8e-68 262.3 404 49.5
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 2.2e-67 260.4 408 46.3
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.2e-67 260.4 391 54.0
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.9e-67 260.0 401 45.9
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 3.8e-67 259.6 400 46.2
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.9e-67 259.2 345 50.7
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 8.4e-67 258.5 345 50.7
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-66 257.7 378 49.5
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 3.2e-66 256.5 395 46.8
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 7.1e-66 255.4 391 48.6
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 2.7e-65 253.4 405 46.4
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 1.8e-64 250.8 393 47.6
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 1.3e-62 244.6 409 44.7
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 1.6e-62 244.2 418 47.4
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 2.8e-62 243.4 367 49.6
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 6.3e-62 242.3 396 44.2
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 3.1e-61 240.0 398 45.5
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 4.1e-61 239.6 336 53.0
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 4.1e-61 239.6 330 52.1
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 4.1e-61 239.6 326 50.3
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 9.0e-61 238.4 394 50.0
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 1.2e-60 238.0 426 46.0
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.6e-60 236.9 389 50.4
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 2.6e-60 236.9 386 46.4
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 2.6e-60 236.9 393 48.6
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.5e-60 236.1 330 51.8
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 7.7e-60 235.3 426 45.8
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 2.2e-59 233.8 293 60.8
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.9e-59 233.4 330 50.9
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 3.8e-59 233.0 399 48.9
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 4.2e-58 229.6 394 47.0
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 1.0e-56 224.9 378 49.2
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.8e-56 224.2 309 51.8
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 1.8e-56 224.2 373 46.6
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 3.7e-54 216.5 400 50.0
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 6.3e-54 215.7 401 45.6
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 3.1e-53 213.4 389 44.5
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 3.1e-53 213.4 393 46.1
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 2.0e-52 210.7 397 42.8
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 2.0e-52 210.7 389 44.5
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 2.0e-52 210.7 405 41.0
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 4.5e-52 209.5 391 47.3
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 4.5e-52 209.5 400 43.2
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 4.5e-52 209.5 394 49.5
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 5.9e-52 209.1 366 45.4
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.9e-50 204.1 328 47.0
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 7.2e-50 202.2 261 55.6
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 9.4e-50 201.8 405 46.7
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 1.2e-49 201.4 332 45.8
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 2.1e-49 200.7 373 49.1
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 2.1e-49 200.7 396 41.4
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 3.9e-48 196.4 369 42.5
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 5.1e-48 196.1 410 41.7
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 2.2e-46 190.7 369 40.7
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 2.8e-46 190.3 283 50.2
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 1.4e-45 188.0 386 41.7
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 2.0e-44 184.1 379 42.0
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 2.0e-44 184.1 379 42.0
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 2.0e-44 184.1 292 46.9
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.6e-44 183.7 269 50.9
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.6e-44 183.7 269 50.9
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 3.5e-44 183.3 379 41.7
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 3.5e-44 183.3 331 44.1
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 7.7e-44 182.2 406 43.3
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 1.0e-43 181.8 331 43.5
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 1.7e-43 181.0 386 40.7
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.2e-43 180.6 390 39.2
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 2.9e-43 180.3 328 44.2
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 2.9e-43 180.3 328 44.2
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 2.9e-43 180.3 332 44.0
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.1e-42 178.3 393 41.0
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 1.1e-42 178.3 386 40.9
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.6e-39 167.2 411 37.0
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 1.6e-33 147.9 377 42.2
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 3.0e-32 143.7 184 48.4
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 1.5e-31 141.4 208 43.8
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 7.5e-31 139.0 345 35.7
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 8.3e-30 135.6 334 37.1
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.9e-28 129.4 198 52.0
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.9e-28 129.4 198 52.0
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 5.5e-26 122.9 235 43.4
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.0e-24 118.6 203 49.8
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 4.0e-24 116.7 188 47.9
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 2.0e-23 114.4 181 45.3
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 1.3e-22 111.7 120 56.7
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 4.5e-20 103.2 281 34.2
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 2.9e-19 100.5 85 65.9
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.2e-17 95.1 358 31.6
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 4.7e-17 93.2 344 32.8
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 1.8e-16 91.3 385 30.9
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 3.0e-16 90.5 100 60.0
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.2e-16 89.7 197 42.6
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.8e-16 89.4 197 42.6
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.5e-15 88.2 197 42.1
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.0e-15 87.8 197 42.1
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.7e-15 86.3 197 41.6
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.5e-15 85.9 197 42.1
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 9.2e-13 79.0 286 32.5
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.6e-12 78.2 116 44.8
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 3.6e-09 67.0 251 33.1
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.0e-08 65.5 165 40.6
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 1.8e-08 64.7 53 66.0
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 9.8e-07 58.9 154 39.6


User provided reference genes

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