Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10525 Trifolium pratense HOM05D007707 ORTHO05D009711 4.4e-43 177.6 90 100.0
Psat2g152640 Pisum sativum HOM05D007707 ORTHO05D009711 5.4e-33 144.1 94 84.0
Glyma.01G163700 Glycine max HOM05D007707 ORTHO05D009711 2.7e-32 141.7 91 76.9
Medtr5g022760 Medicago truncatula HOM05D007707 ORTHO05D009711 6.0e-32 140.6 75 90.7
Glyma.11G079800 Glycine max HOM05D007707 ORTHO05D009711 1.0e-31 139.8 89 79.8
Lj2g0020635 Lotus japonicus HOM05D007707 ORTHO05D009711 9.5e-30 133.3 91 70.3
Phvul.002G105900 Phaseolus vulgaris HOM05D007707 ORTHO05D009711 8.1e-29 130.2 75 82.7
Lalb_Chr09g0321541 Lupinus albus HOM05D007707 ORTHO05D009711 2.3e-23 112.1 85 72.9
TWI73G0967 Tripterygium wilfordii HOM05D007707 ORTHO05D009711 2.8e-21 105.1 88 62.5
Sed0012149 Sechium edule HOM05D007707 ORTHO05D009711 1.4e-20 102.8 88 60.2
Gohir.D11G180000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 1.8e-20 102.4 87 62.1
Gorai.007G191900 Gossypium raimondii HOM05D007707 ORTHO05D009711 1.8e-20 102.4 87 62.1
arahy.Tifrunner.gnm1.ann1.LEB2TA Arachis hypogaea HOM05D007707 ORTHO05D009711 5.2e-20 100.9 72 68.1
arahy.Tifrunner.gnm1.ann1.URRP40 Arachis hypogaea HOM05D007707 ORTHO05D009711 5.2e-20 100.9 72 68.1
Gohir.A11G173000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 5.2e-20 100.9 87 60.9
A03p63940 Brassica napus HOM05D007707 ORTHO05D009711 6.8e-20 100.5 76 65.8
BraA03t15463Z Brassica rapa HOM05D007707 ORTHO05D009711 6.8e-20 100.5 76 65.8
CiPaw.07G061600 Carya illinoinensis HOM05D007707 ORTHO05D009711 6.8e-20 100.5 80 63.8
CARHR244300 Cardamine hirsuta HOM05D007707 ORTHO05D009711 8.9e-20 100.1 75 65.3
MELO3C007931.2 Cucumis melo HOM05D007707 ORTHO05D009711 1.2e-19 99.8 80 58.8
ClCG01G020510 Citrullus lanatus HOM05D007707 ORTHO05D009711 1.5e-19 99.4 73 64.4
AT4G35905 Arabidopsis thaliana HOM05D007707 ORTHO05D009711 2.6e-19 98.6 76 64.5
AL7G15140 Arabidopsis lyrata HOM05D007707 ORTHO05D009711 4.4e-19 97.8 76 64.5
Dinv08562 Davidia involucrata HOM05D007707 ORTHO05D009711 4.4e-19 97.8 76 63.2
Sp7g33690 Schrenkiella parvula HOM05D007707 ORTHO05D009711 7.6e-19 97.1 76 65.8
BolC7t46567H Brassica oleracea HOM05D007707 ORTHO05D009711 9.9e-19 96.7 76 64.5
Cfa007014 Carpinus fangiana HOM05D007707 ORTHO05D009711 1.3e-18 96.3 59 72.9
CsaV3_6G047390 Cucumis sativus L. HOM05D007707 ORTHO05D009711 1.3e-18 96.3 80 56.2
MBI08_g05062_MAGBIO Magnolia biondii HOM05D007707 ORTHO05D009711 1.3e-18 96.3 89 56.2
Manes.01G149600 Manihot esculenta HOM05D007707 ORTHO05D009711 2.2e-18 95.5 77 58.4
Thecc.01G013500 Theobroma cacao HOM05D007707 ORTHO05D009711 2.2e-18 95.5 72 66.7
Rhsim10G0207600 Rhododendron simsii HOM05D007707 ORTHO05D009711 2.9e-18 95.1 93 52.7
Carub.0007s0432 Capsella rubella HOM05D007707 ORTHO05D009711 6.4e-18 94.0 76 63.2
ECA246G5216 Erigeron canadensis HOM05D007707 ORTHO05D009711 6.4e-18 94.0 71 66.2
Duzib147G0406 Durio zibethinus HOM05D007707 ORTHO05D009711 8.4e-18 93.6 85 58.8
vmacro22198 Vaccinium macrocarpon HOM05D007707 ORTHO05D009711 8.4e-18 93.6 86 53.5
Aa31LG6G12850 Aethionema arabicum HOM05D007707 ORTHO05D009711 1.4e-17 92.8 71 63.4
Thhalv10026722m.g Eutrema salsugineum HOM05D007707 ORTHO05D009711 1.4e-17 92.8 70 62.9
Ciclev10026827m.g Citrus clementina HOM05D007707 ORTHO05D009711 1.9e-17 92.4 87 56.3
Prupe.7G172900 Prunus persica HOM05D007707 ORTHO05D009711 2.4e-17 92.0 89 55.1
Haze_03717 Corylus avellana HOM05D007707 ORTHO05D009711 5.4e-17 90.9 89 55.1
Hma1.2p1_0869F.1_g230620 Hydrangea macrophylla HOM05D007707 ORTHO05D009711 5.4e-17 90.9 75 58.7
EL10Ac6g15163 Beta vulgaris HOM05D007707 ORTHO05D009711 7.1e-17 90.5 74 60.8
QL06p051322 Quercus lobata HOM05D007707 ORTHO05D009711 7.1e-17 90.5 78 60.3
Sc16g0001900 Simmondsia chinensis HOM05D007707 ORTHO05D009711 7.1e-17 90.5 76 57.9
CANSAT01G1439 Cannabis sativa HOM05D007707 ORTHO05D009711 9.2e-17 90.1 74 58.1
PGR102G1942 Punica granatum HOM05D007707 ORTHO05D009711 9.2e-17 90.1 92 55.4
THA.LOC104804277 Tarenaya hassleriana HOM05D007707 ORTHO05D009711 1.2e-16 89.7 78 60.3
COL.COLO4_22472 Corchorus olitorius HOM05D007707 ORTHO05D009711 1.6e-16 89.4 71 64.8
Ah.02g123290 Amaranthus hybridus HOM05D007707 ORTHO05D009711 2.7e-16 88.6 71 59.2
FAN19G0536 Fragaria x ananassa HOM05D007707 ORTHO05D009711 4.6e-16 87.8 73 60.3
Peaxi162Scf00635g00914 Petunia axillaris HOM05D007707 ORTHO05D009711 1.0e-15 86.7 62 64.5
Sabra15G0015600 Salix brachista HOM05D007707 ORTHO05D009711 1.0e-15 86.7 47 80.9
AUR62018017 Chenopodium quinoa HOM05D007707 ORTHO05D009711 1.3e-15 86.3 79 57.0
Lsat_1_v5_gn_3_71080 Lactuca sativa HOM05D007707 ORTHO05D009711 1.3e-15 86.3 65 64.6
RcHm_v2.0_Chr2g0098761 Rosa chinensis HOM05D007707 ORTHO05D009711 1.7e-15 85.9 93 51.6
Cc07_g11150 Coffea canephora HOM05D007707 ORTHO05D009711 3.0e-15 85.1 95 49.5
FAN23G0755 Fragaria x ananassa HOM05D007707 ORTHO05D009711 3.0e-15 85.1 73 58.9
MD15G1241100 Malus domestica HOM05D007707 ORTHO05D009711 3.0e-15 85.1 93 49.5
arahy.Tifrunner.gnm1.ann1.04LXIS Arachis hypogaea HOM05D000001 ORTHO05D009700 8.7e-15 83.6 53 75.5
CAN.G354.55 Capsicum annuum HOM05D007707 ORTHO05D009711 8.7e-15 83.6 77 55.8
FAN28G2511 Fragaria x ananassa HOM05D007707 ORTHO05D009711 8.7e-15 83.6 66 59.1
Os10g0438700 Oryza sativa ssp. japonica HOM05D007707 ORTHO05D009711 8.7e-15 83.6 64 59.4
Nn6g31960 Nelumbo nucifera HOM05D007707 ORTHO05D009711 1.9e-14 82.4 95 50.5
Migut.J01748 Erythranthe guttata HOM05D007707 ORTHO05D009711 2.5e-14 82.0 74 56.8
Nitab4.5_0001561g0120 Nicotiana tabacum HOM05D007707 ORTHO05D009711 5.6e-14 80.9 73 53.4
ATR0180G024 Amborella trichopoda HOM05D007707 ORTHO05D009711 7.3e-14 80.5 66 59.1
Sopen03g006140 Solanum pennellii HOM05D007707 ORTHO05D009711 7.3e-14 80.5 58 65.5
Zm00001eb222710 Zea mays HOM05D007707 ORTHO05D009711 7.3e-14 80.5 53 64.2
BcaNung05054 Brassica carinata HOM05D007707 ORTHO05D009711 9.6e-14 80.1 77 57.1
DCAR_011610 Daucus carota HOM05D007707 ORTHO05D009711 9.6e-14 80.1 92 50.0
CDE05G2854 Ceratophyllum demersum HOM05D007707 ORTHO05D009711 1.6e-13 79.3 87 51.7
Solyc03g033370.3 Solanum lycopersicum HOM05D007707 ORTHO05D009711 2.8e-13 78.6 53 67.9
Nitab4.5_0001685g0100 Nicotiana tabacum HOM05D007707 ORTHO05D009711 3.6e-13 78.2 54 64.8
Pp3c14_18830 Physcomitrium patens HOM05D007707 ORTHO05D009711 8.1e-13 77.0 61 52.5
Oeu056393.1 Olea europaea HOM05D007707 ORTHO05D009711 1.1e-12 76.6 77 49.4
SGA_v2.0_scaffold36G14291 Striga asiatica HOM05D007707 ORTHO05D009711 1.4e-12 76.3 53 64.2
Mapoly0124s0029 Marchantia polymorpha HOM05D007707 ORTHO05D009711 1.5e-11 72.8 56 60.7
CSS0044701 Camellia sinensis var. sinensis HOM05D007707 ORTHO05D009711 4.9e-10 67.8 49 61.2
C07p61410 Brassica napus HOM05D007707 ORTHO05D009711 8.4e-10 67.0 41 75.6
SEGI_22054 Sequoiadendron giganteum HOM05D007707 ORTHO05D009711 3.2e-09 65.1 80 41.2
Actinidia22948 Actinidia chinensis HOM05D007707 ORTHO05D009711 5.4e-09 64.3 60 56.7
GSVIVG01006523001 Vitis vinifera HOM05D007707 ORTHO05D009711 3.5e-08 61.6 53 60.4
Hund14067 Selenicereus undatus HOM05D007707 ORTHO05D009711 4.6e-08 61.2 54 55.6
Eucgr.J02480 Eucalyptus grandis HOM05D007707 ORTHO05D009711 7.8e-08 60.5 60 51.7
FvH4_1g11290 Fragaria vesca HOM05D007707 ORTHO05D009711 3.3e-06 55.1 50 50.0
HanXRQChr09g0245181 Helianthus annuus HOM05D007707 ORTHO05D009711 9.6e-06 53.5 48 58.3
HPP92_020736 Vanilla planifolia HOM05D007707 ORTHO05D009711 9.6e-06 53.5 51 54.9


User provided reference genes

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