Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10511 Trifolium pratense HOM05D000735 ORTHO05D004669 3.3e-50 201.4 104 100.0
Ca_11371_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 2.0e-47 192.2 103 98.1
Medtr2g028230 Medicago truncatula HOM05D000735 ORTHO05D004669 1.3e-46 189.5 99 97.0
Ca_00788_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 9.3e-45 183.3 99 98.0
Lj6g0025657 Lotus japonicus HOM05D000735 ORTHO05D004669 2.1e-44 182.2 99 96.0
VMungo0540G1324 Vigna mungo HOM05D000735 ORTHO05D004669 1.7e-43 179.1 102 92.2
Glyma.15G124100 Glycine max HOM05D000735 ORTHO05D004669 4.3e-42 174.5 99 92.9
Phvul.006G134033 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 1.1e-40 169.9 99 89.9
Glyma.09G018200 Glycine max HOM05D000735 ORTHO05D004669 2.4e-40 168.7 99 89.9
Lalb_Chr18g0057611 Lupinus albus HOM05D000735 ORTHO05D004669 2.4e-40 168.7 102 87.3
QL05p065753 Quercus lobata HOM05D000735 ORTHO05D004669 5.3e-40 167.5 104 84.6
Lalb_Chr20g0119801 Lupinus albus HOM05D000735 ORTHO05D004669 6.9e-40 167.2 101 88.1
GSVIVG01019363001 Vitis vinifera HOM05D000735 ORTHO05D004669 4.5e-39 164.5 98 87.8
Rhsim13G0137400 Rhododendron simsii HOM05D000735 ORTHO05D004669 1.3e-38 162.9 98 86.7
Cpa.g.sc31.41 Carica papaya HOM05D000735 ORTHO05D004669 3.8e-38 161.4 103 83.5
Prupe.4G000200 Prunus persica HOM05D000735 ORTHO05D004669 3.8e-38 161.4 94 88.3
Cc09_g00030 Coffea canephora HOM05D000735 ORTHO05D004669 4.9e-38 161.0 100 84.0
CSS0035227 Camellia sinensis var. sinensis HOM05D000735 ORTHO05D004669 8.4e-38 160.2 103 82.5
Atru.chr1.2250_Atru.chr1.2251 Acer truncatum HOM05D000735 ORTHO05D004669 1.9e-37 159.1 94 87.2
HanXRQChr14g0455051 Helianthus annuus HOM05D000735 ORTHO05D004669 1.9e-37 159.1 99 80.8
Hma1.2p1_0394F.1_g143380 Hydrangea macrophylla HOM05D000735 ORTHO05D004669 3.2e-37 158.3 99 82.8
CiPaw.10G085400 Carya illinoinensis HOM05D000735 ORTHO05D004669 7.1e-37 157.1 99 82.8
COL.COLO4_31970 Corchorus olitorius HOM05D000735 ORTHO05D004669 1.2e-36 156.4 97 84.5
Oeu025986.1 Olea europaea HOM05D000735 ORTHO05D004669 1.6e-36 156.0 97 84.5
TAR365G0853 Trochodendron aralioides HOM05D000735 ORTHO05D004669 1.6e-36 156.0 99 84.8
Hund24367 Selenicereus undatus HOM05D000735 ORTHO05D004669 3.5e-36 154.8 103 79.6
MD00G1208600 Malus domestica HOM05D000735 ORTHO05D004669 4.6e-36 154.5 94 85.1
Dinv04373 Davidia involucrata HOM05D000735 ORTHO05D004669 6.0e-36 154.1 100 81.0
Phvul.003G089800 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 1.0e-35 153.3 96 84.4
Solyc04g056600.4 Solanum lycopersicum HOM05D000735 ORTHO05D004669 3.9e-35 151.4 94 85.1
SHI24427 Sapria himalayana HOM05D000735 ORTHO05D004669 5.1e-35 151.0 101 76.2
Sed0022776 Sechium edule HOM05D000735 ORTHO05D004669 5.1e-35 151.0 104 78.8
DCAR_022843 Daucus carota HOM05D000735 ORTHO05D004669 6.7e-35 150.6 93 86.0
Manes.10G068400 Manihot esculenta HOM05D000735 ORTHO05D004669 6.7e-35 150.6 100 80.0
MELO3C026096.2 Cucumis melo HOM05D000735 ORTHO05D004669 1.1e-34 149.8 93 84.9
CsaV3_1G015620 Cucumis sativus L. HOM05D000735 ORTHO05D004669 1.1e-34 149.8 93 84.9
Migut.M01487 Erythranthe guttata HOM05D000735 ORTHO05D004669 1.1e-34 149.8 96 83.3
C06p29770 Brassica napus HOM05D000290 ORTHO05D006513 1.5e-34 149.4 100 80.0
BolC6t38138H Brassica oleracea HOM05D000290 ORTHO05D006513 1.5e-34 149.4 100 80.0
BcaC08g47521 Brassica carinata HOM05D000735 ORTHO05D004669 1.9e-34 149.1 100 79.0
A07p27040 Brassica napus HOM05D000290 ORTHO05D006513 1.9e-34 149.1 100 79.0
A07p44630 Brassica napus HOM05D000735 ORTHO05D004669 1.9e-34 149.1 100 79.0
BraA07t30348Z Brassica rapa HOM05D000290 ORTHO05D006513 1.9e-34 149.1 100 79.0
BraA07t31972Z Brassica rapa HOM05D000735 ORTHO05D004669 1.9e-34 149.1 100 79.0
Potri.016G000200 Populus trichocarpa HOM05D000735 ORTHO05D004669 1.9e-34 149.1 97 81.4
TWI63G0350 Tripterygium wilfordii HOM05D000735 ORTHO05D004669 1.9e-34 149.1 102 80.4
Duzib192G0339 Durio zibethinus HOM05D000735 ORTHO05D004669 2.5e-34 148.7 93 84.9
HanXRQChr14g0455081 Helianthus annuus HOM05D000735 ORTHO05D004669 2.5e-34 148.7 99 74.7
unitig_26.g10052 Utricularia gibba HOM05D000735 ORTHO05D004669 3.3e-34 148.3 97 78.4
FvH4_3g00030 Fragaria vesca HOM05D000735 ORTHO05D004669 4.3e-34 147.9 90 85.6
ECA247G3031 Erigeron canadensis HOM05D000735 ORTHO05D004669 7.4e-34 147.1 101 77.2
Gohir.A01G036500 Gossypium hirsutum HOM05D000735 ORTHO05D004669 7.4e-34 147.1 93 84.9
Gorai.002G032300 Gossypium raimondii HOM05D000735 ORTHO05D004669 7.4e-34 147.1 93 84.9
Thecc.06G244900 Theobroma cacao HOM05D000735 ORTHO05D004669 7.4e-34 147.1 83 90.4
Gohir.A06G181100 Gossypium hirsutum HOM05D000735 ORTHO05D004669 1.3e-33 146.4 88 85.2
Gohir.D06G187900 Gossypium hirsutum HOM05D000735 ORTHO05D004669 1.3e-33 146.4 88 85.2
Gorai.010G220200 Gossypium raimondii HOM05D000735 ORTHO05D004669 1.3e-33 146.4 88 85.2
THA.LOC104813594 Tarenaya hassleriana HOM05D000735 ORTHO05D004669 1.3e-33 146.4 96 81.2
BolC6t40362H Brassica oleracea HOM05D000735 ORTHO05D004669 1.6e-33 146.0 97 79.4
Eucgr.E04241 Eucalyptus grandis HOM05D000735 ORTHO05D004669 1.6e-33 146.0 98 77.6
AL2G40300 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 2.8e-33 145.2 99 78.8
AT1G79610 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 2.8e-33 145.2 99 78.8
Carub.0002s2649 Capsella rubella HOM05D000735 ORTHO05D004669 2.8e-33 145.2 99 78.8
Zm00001eb308990 Zea mays HOM05D000735 ORTHO05D004669 3.7e-33 144.8 85 85.9
CARHR073340 Cardamine hirsuta HOM05D000735 ORTHO05D004669 6.2e-33 144.1 99 77.8
Nitab4.5_0000276g0160 Nicotiana tabacum HOM05D000735 ORTHO05D004669 6.2e-33 144.1 98 80.6
Glyma.07G270400 Glycine max HOM05D000735 ORTHO05D004669 8.1e-33 143.7 81 88.9
Gohir.D01G023800 Gossypium hirsutum HOM05D000735 ORTHO05D004669 8.1e-33 143.7 93 82.8
Sabra16G0008100 Salix brachista HOM05D000735 ORTHO05D004669 8.1e-33 143.7 82 89.0
AL1G64590 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 1.1e-32 143.3 93 80.6
Thhalv10018385m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 1.4e-32 142.9 97 79.4
Nn1g08298 Nelumbo nucifera HOM05D000735 ORTHO05D004669 1.8e-32 142.5 96 81.2
MSTRG.7102 Avicennia marina HOM05D000735 ORTHO05D004669 3.1e-32 141.7 93 80.6
AT1G54370 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 4.0e-32 141.4 93 78.5
Carub.0001s4478 Capsella rubella HOM05D000735 ORTHO05D004669 5.3e-32 141.0 96 79.2
Sp1g41910 Schrenkiella parvula HOM05D000735 ORTHO05D004669 5.3e-32 141.0 96 78.1
Aqoxy1G01335 Aquilegia oxysepala HOM05D000735 ORTHO05D004669 6.9e-32 140.6 81 88.9
Thhalv10011392m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 6.9e-32 140.6 96 77.1
Os09g0286400 Oryza sativa ssp. japonica HOM05D000735 ORTHO05D004669 1.5e-31 139.4 85 83.5
PGR042G3067 Punica granatum HOM05D000735 ORTHO05D004669 2.6e-31 138.7 79 91.1
C06p53470 Brassica napus HOM05D000735 ORTHO05D004669 1.9e-29 132.5 94 74.5
Os09g0482620 Oryza sativa ssp. japonica HOM05D000735 ORTHO05D004669 5.5e-29 131.0 84 78.6
Haze_07068 Corylus avellana HOM05D000735 ORTHO05D004669 9.3e-29 130.2 94 77.7
Actinidia01459 Actinidia chinensis HOM05D000735 ORTHO05D004669 1.6e-28 129.4 94 75.5
arahy.Tifrunner.gnm1.ann1.MYF06S Arachis hypogaea HOM05D000735 ORTHO05D004669 2.1e-28 129.0 80 87.5
PSO541G3261 Papaver somniferum HOM05D000735 ORTHO05D004669 2.7e-28 128.6 76 85.5
PSO675G6844 Papaver somniferum HOM05D000735 ORTHO05D004669 2.7e-28 128.6 76 85.5
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 7.9e-28 127.1 77 89.6
Zm00001eb316390 Zea mays HOM05D000735 ORTHO05D004669 5.1e-27 124.4 80 78.8
Ciclev10024040m.g Citrus clementina HOM05D000735 ORTHO05D004669 3.7e-25 118.2 75 84.0
Mapoly0001s0256 Marchantia polymorpha HOM05D000735 ORTHO05D004669 8.2e-25 117.1 85 68.2
Ciclev10018215m.g Citrus clementina HOM05D000735 ORTHO05D004669 6.9e-24 114.0 78 79.5
Lj2A254G92 Lonicera japonica HOM05D000735 ORTHO05D004669 6.9e-24 114.0 77 81.8
Pp3c13_14340 Physcomitrium patens HOM05D000735 ORTHO05D004669 6.9e-24 114.0 80 72.5
HanXRQChr16g0515311 Helianthus annuus HOM05D000735 ORTHO05D004669 2.6e-23 112.1 108 60.2
Lsat_1_v5_gn_4_64520 Lactuca sativa HOM05D000735 ORTHO05D004669 4.5e-23 111.3 74 78.4
Ciclev10013365m.g Citrus clementina HOM05D000735 ORTHO05D004669 7.6e-23 110.5 86 69.8
SalBow8G2387 Salvia bowleyana HOM05D000735 ORTHO05D004669 7.6e-23 110.5 86 72.1
Nitab4.5_0000083g0040 Nicotiana tabacum HOM05D000735 ORTHO05D004669 1.0e-22 110.2 74 82.4
ATR0568G172 Amborella trichopoda HOM05D000735 ORTHO05D004669 1.3e-22 109.8 64 89.1
AUR62015223 Chenopodium quinoa HOM05D000735 ORTHO05D004669 1.3e-22 109.8 73 82.2
Ciclev10026680m.g Citrus clementina HOM05D000735 ORTHO05D004669 1.3e-22 109.8 99 63.6
ClCG01G011310 Citrullus lanatus HOM05D000735 ORTHO05D004669 2.9e-22 108.6 75 80.0
SMO367G0875 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 5.0e-22 107.8 81 65.4
SGA_v2.0_scaffold186G40162 Striga asiatica HOM05D000735 ORTHO05D004669 5.0e-22 107.8 76 80.3
Aa31LG4G1360 Aethionema arabicum HOM05D000735 ORTHO05D004669 1.4e-21 106.3 78 75.6
Peaxi162Scf00529g00815 Petunia axillaris HOM05D000735 ORTHO05D004669 1.4e-21 106.3 74 79.7
arahy.Tifrunner.gnm1.ann1.3U55TZ Arachis hypogaea HOM05D000735 ORTHO05D004669 1.9e-21 105.9 82 72.0
Ciclev10033106m.g Citrus clementina HOM05D000735 ORTHO05D004669 3.2e-21 105.1 79 72.2
arahy.Tifrunner.gnm1.ann1.LC1B8P Arachis hypogaea HOM05D000735 ORTHO05D004669 4.2e-21 104.8 80 72.5
Sp5g34680 Schrenkiella parvula HOM05D000735 ORTHO05D004669 2.1e-20 102.4 77 76.6
RcHm_v2.0_Chr5g0000051 Rosa chinensis HOM05D000735 ORTHO05D004669 1.4e-16 89.7 58 81.0
VMungo1215G1296 Vigna mungo HOM05D000735 ORTHO05D004669 3.1e-16 88.6 68 72.1
FAN21G4060 Fragaria x ananassa HOM05D000735 ORTHO05D004669 9.0e-16 87.0 57 78.9
FAN25G1440 Fragaria x ananassa HOM05D000735 ORTHO05D004669 9.0e-16 87.0 57 78.9
EL10Ac9g22942 Beta vulgaris HOM05D000735 ORTHO05D004669 1.5e-15 86.3 60 80.0
Mapoly0058s0105 Marchantia polymorpha HOM05D000735 ORTHO05D004669 2.6e-15 85.5 76 55.3
AUR62017691 Chenopodium quinoa HOM05D000735 ORTHO05D004669 5.9e-15 84.3 62 75.8
CAN.G642.1 Capsicum annuum HOM05D000735 ORTHO05D004669 7.7e-15 84.0 57 80.7
CBR_g54785 Chara braunii HOM05D000735 ORTHO05D004669 2.2e-14 82.4 82 42.7
BcaB02g07228 Brassica carinata HOM05D000735 ORTHO05D004669 2.9e-14 82.0 64 73.4
Ah.01g012200 Amaranthus hybridus HOM05D000735 ORTHO05D004669 1.1e-13 80.1 56 80.4
Sc25g0001890 Simmondsia chinensis HOM05D000735 ORTHO05D004669 2.5e-13 79.0 63 73.0
SMO364G0202 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 5.5e-13 77.8 81 50.6
HPP92_027541 Vanilla planifolia HOM05D000735 ORTHO05D004669 1.6e-12 76.3 63 69.8
Pp3c9_15590 Physcomitrium patens HOM05D000735 ORTHO05D004669 5.7e-10 67.8 80 47.5
PRCOL_00002497 Prasinoderma coloniale HOM05D000735 ORTHO05D004669 9.7e-10 67.0 91 36.3
MCO07G302 Micromonas commoda HOM05D000735 ORTHO05D004669 1.5e-07 59.7 99 37.4


User provided reference genes

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