Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10477 Trifolium pratense HOM05D007436 ORTHO05D009398 2.2e-123 445.7 224 100.0
Medtr2g028000 Medicago truncatula HOM05D007436 ORTHO05D009398 1.8e-109 399.4 227 90.3
Psat1g171240 Pisum sativum HOM05D007436 ORTHO05D009398 5.2e-109 397.9 225 89.3
Lj6g0025098 Lotus japonicus HOM05D007436 ORTHO05D009398 7.2e-103 377.5 225 83.1
Ca_24687_v3 Cicer arietinum L. HOM05D007436 ORTHO05D009398 9.4e-103 377.1 225 85.8
Phvul.006G134500 Phaseolus vulgaris HOM05D007436 ORTHO05D009398 9.8e-100 367.1 227 83.3
VMungo0540G0488 Vigna mungo HOM05D007436 ORTHO05D009398 9.8e-100 367.1 227 82.8
Glyma.15G123400 Glycine max HOM05D007436 ORTHO05D009398 5.9e-97 357.8 227 80.2
Glyma.09G017600 Glycine max HOM05D007436 ORTHO05D009398 1.6e-94 349.7 227 78.9
Lalb_Chr15g0088471 Lupinus albus HOM05D007436 ORTHO05D009398 5.0e-88 328.2 204 79.9
TAR627G0530 Trochodendron aralioides HOM05D007436 ORTHO05D009398 1.1e-79 300.4 232 65.9
Haze_07065 Corylus avellana HOM05D007436 ORTHO05D009398 7.3e-79 297.7 204 76.0
MSTRG.14579 Avicennia marina HOM05D007436 ORTHO05D009398 2.8e-78 295.8 196 73.5
Dinv04377 Davidia involucrata HOM05D007436 ORTHO05D009398 2.8e-78 295.8 208 71.2
QL05p066185 Quercus lobata HOM05D007436 ORTHO05D009398 1.0e-77 293.9 225 69.8
Rhsim13G0138000 Rhododendron simsii HOM05D007436 ORTHO05D009398 4.0e-77 292.0 229 67.2
Hma1.2p1_0394F.1_g143390 Hydrangea macrophylla HOM05D007436 ORTHO05D009398 5.2e-77 291.6 225 65.8
Ciclev10016151m.g Citrus clementina HOM05D007436 ORTHO05D009398 8.9e-77 290.8 206 70.4
MBI14_g12730_MAGBIO Magnolia biondii HOM05D007436 ORTHO05D009398 1.2e-76 290.4 206 69.9
Actinidia01458 Actinidia chinensis HOM05D007436 ORTHO05D009398 4.4e-76 288.5 180 77.8
Prupe.4G000400 Prunus persica HOM05D007436 ORTHO05D009398 7.5e-76 287.7 205 70.7
TWI38G0239 Tripterygium wilfordii HOM05D007436 ORTHO05D009398 7.5e-76 287.7 203 70.4
Thecc.06G244700 Theobroma cacao HOM05D007436 ORTHO05D009398 9.8e-76 287.3 200 70.0
Migut.H01642 Erythranthe guttata HOM05D007436 ORTHO05D009398 1.3e-75 287.0 219 66.7
Potri.006G000600 Populus trichocarpa HOM05D007436 ORTHO05D009398 3.7e-75 285.4 174 79.9
Potri.016G000900 Populus trichocarpa HOM05D007436 ORTHO05D009398 3.7e-75 285.4 176 79.0
Aqoxy5G00546 Aquilegia oxysepala HOM05D007436 ORTHO05D009398 6.4e-75 284.6 171 81.3
MD10G1342400 Malus domestica HOM05D007436 ORTHO05D009398 1.1e-74 283.9 229 64.6
PGR004G2900 Punica granatum HOM05D007436 ORTHO05D009398 1.4e-74 283.5 197 69.5
FvH4_3g00011 Fragaria vesca HOM05D007436 ORTHO05D009398 4.1e-74 282.0 204 68.6
COL.COLO4_31969 Corchorus olitorius HOM05D007436 ORTHO05D009398 7.0e-74 281.2 200 68.5
Nitab4.5_0000147g0110 Nicotiana tabacum HOM05D007436 ORTHO05D009398 7.0e-74 281.2 185 74.1
CsaV3_6G047980 Cucumis sativus L. HOM05D007436 ORTHO05D009398 9.2e-74 280.8 206 69.4
Nitab4.5_0001663g0200 Nicotiana tabacum HOM05D007436 ORTHO05D009398 9.2e-74 280.8 183 74.9
ECA247G4131 Erigeron canadensis HOM05D007436 ORTHO05D009398 1.6e-73 280.0 172 77.3
Cc09_g00050 Coffea canephora HOM05D007436 ORTHO05D009398 6.0e-73 278.1 181 73.5
RcHm_v2.0_Chr5g0000011 Rosa chinensis HOM05D007436 ORTHO05D009398 7.8e-73 277.7 224 64.7
Gohir.D05G180600 Gossypium hirsutum HOM05D007436 ORTHO05D009398 1.7e-72 276.6 173 76.3
Gorai.009G185600 Gossypium raimondii HOM05D007436 ORTHO05D009398 1.7e-72 276.6 173 76.3
HanXRQChr05g0129051 Helianthus annuus HOM05D007436 ORTHO05D009398 1.7e-72 276.6 171 76.0
FAN21G3717 Fragaria x ananassa HOM05D007436 ORTHO05D009398 3.0e-72 275.8 195 69.7
Lsat_1_v5_gn_7_12720 Lactuca sativa HOM05D007436 ORTHO05D009398 3.0e-72 275.8 172 76.2
HPP92_000124 Vanilla planifolia HOM05D007436 ORTHO05D009398 3.0e-72 275.8 205 67.3
DCAR_015316 Daucus carota HOM05D007436 ORTHO05D009398 5.0e-72 275.0 205 67.3
EL10Ac6g14103 Beta vulgaris HOM05D007436 ORTHO05D009398 6.6e-72 274.6 194 67.0
PGSC0003DMG400027262 Solanum tuberosum HOM05D007436 ORTHO05D009398 6.6e-72 274.6 177 75.7
ClCG01G021000 Citrullus lanatus HOM05D007436 ORTHO05D009398 1.5e-71 273.5 209 66.5
Solyc04g015330.3 Solanum lycopersicum HOM05D007436 ORTHO05D009398 1.5e-71 273.5 177 75.7
arahy.Tifrunner.gnm1.ann1.61UQ0U Arachis hypogaea HOM05D007436 ORTHO05D009398 3.3e-71 272.3 205 72.2
CAN.G1905.6 Capsicum annuum HOM05D007436 ORTHO05D009398 4.3e-71 271.9 217 63.6
Sed0017957 Sechium edule HOM05D007436 ORTHO05D009398 5.6e-71 271.6 229 61.6
Sopen04g007390 Solanum pennellii HOM05D007436 ORTHO05D009398 7.3e-71 271.2 177 74.6
Cpa.g.sc27.183 Carica papaya HOM05D007436 ORTHO05D009398 1.2e-70 270.4 268 56.0
Ah.02g128250 Amaranthus hybridus HOM05D007436 ORTHO05D009398 3.6e-70 268.9 177 71.2
vmacro03584 Vaccinium macrocarpon HOM05D007436 ORTHO05D009398 3.6e-70 268.9 209 67.5
ATR0751G013 Amborella trichopoda HOM05D007436 ORTHO05D009398 8.1e-70 267.7 236 57.6
AUR62028431 Chenopodium quinoa HOM05D007436 ORTHO05D009398 1.4e-69 266.9 177 70.6
AUR62002774 Chenopodium quinoa HOM05D007436 ORTHO05D009398 8.9e-69 264.2 193 66.3
Sc24g0002050 Simmondsia chinensis HOM05D007436 ORTHO05D009398 2.0e-68 263.1 222 59.5
Nn3g16606 Nelumbo nucifera HOM05D007436 ORTHO05D009398 4.4e-68 261.9 154 80.5
Sabra06G0000900 Salix brachista HOM05D002163 ORTHO05D002386 2.2e-67 259.6 159 81.1
Oeu016929.1 Olea europaea HOM05D007436 ORTHO05D009398 4.9e-67 258.5 157 80.9
GSVIVG01002756001 Vitis vinifera HOM05D007436 ORTHO05D009398 6.4e-67 258.1 186 70.4
CDE03G0161 Ceratophyllum demersum HOM05D007436 ORTHO05D009398 1.1e-66 257.3 204 60.8
Os09g0287300 Oryza sativa ssp. japonica HOM05D007436 ORTHO05D009398 1.9e-66 256.5 170 75.3
CDE06G2435 Ceratophyllum demersum HOM05D007436 ORTHO05D009398 2.4e-66 256.1 228 57.9
BcaC06g33383 Brassica carinata HOM05D007436 ORTHO05D009398 3.2e-66 255.8 188 67.6
C07p46820 Brassica napus HOM05D007436 ORTHO05D009398 3.2e-66 255.8 188 67.6
BolC7t45199H Brassica oleracea HOM05D007436 ORTHO05D009398 3.2e-66 255.8 188 67.6
A03p48730 Brassica napus HOM05D007436 ORTHO05D009398 7.1e-66 254.6 188 67.6
Sp5g10120 Schrenkiella parvula HOM05D007436 ORTHO05D009398 9.2e-66 254.2 177 70.1
Zm00001eb309010 Zea mays HOM05D007436 ORTHO05D009398 9.2e-66 254.2 167 76.0
BraA03t13973Z Brassica rapa HOM05D007436 ORTHO05D009398 1.2e-65 253.8 188 67.0
THA.LOC104813862 Tarenaya hassleriana HOM05D007436 ORTHO05D009398 1.2e-65 253.8 177 67.8
AL5G32730 Arabidopsis lyrata HOM05D007436 ORTHO05D009398 1.6e-65 253.4 177 68.9
Aa31LG10G7250 Aethionema arabicum HOM05D007436 ORTHO05D009398 2.1e-65 253.1 171 70.8
Carub.0005s1851 Capsella rubella HOM05D007436 ORTHO05D009398 2.7e-65 252.7 177 68.4
AT3G52155 Arabidopsis thaliana HOM05D007436 ORTHO05D009398 4.6e-65 251.9 177 68.4
CiPaw.09G113200 Carya illinoinensis HOM05D007436 ORTHO05D009398 7.8e-65 251.1 155 79.4
Thhalv10010705m.g Eutrema salsugineum HOM05D007436 ORTHO05D009398 7.8e-65 251.1 177 69.5
Peaxi162Scf00563g00525 Petunia axillaris HOM05D007436 ORTHO05D009398 7.8e-65 251.1 153 77.8
CARHR161900 Cardamine hirsuta HOM05D007436 ORTHO05D009398 7.3e-63 244.6 172 67.4
Hund25779 Selenicereus undatus HOM05D007436 ORTHO05D009398 1.2e-62 243.8 168 70.8
Mapoly0056s0036 Marchantia polymorpha HOM05D007436 ORTHO05D009398 8.9e-61 237.7 178 64.0
Zm00001eb097480 Zea mays HOM05D007436 ORTHO05D009398 2.0e-60 236.5 152 78.9
Atru.chr1.2207 Acer truncatum HOM05D002163 ORTHO05D002386 2.1e-57 226.5 157 72.0
Pp3c4_8570 Physcomitrium patens HOM05D007436 ORTHO05D009398 3.3e-55 219.2 172 61.0
SMO358G0652 Selaginella moellendorffii HOM05D007436 ORTHO05D009398 4.3e-55 218.8 170 57.6
AagrBONN_evm.TU.Sc2ySwM_228.5510 Anthoceros agrestis HOM05D007436 ORTHO05D009398 6.8e-53 211.5 175 59.4
Sabra16G0007700 Salix brachista HOM05D002163 ORTHO05D002386 5.1e-48 195.3 228 54.4
CBR_g31519 Chara braunii HOM05D007436 ORTHO05D009398 7.3e-47 191.4 177 55.4
Hma1.2p1_0394F.1_g143400 Hydrangea macrophylla HOM05D007436 ORTHO05D009398 2.1e-46 189.9 166 60.8
Lj1A1250G60 Lonicera japonica HOM05D007436 ORTHO05D009398 2.2e-43 179.9 125 72.0
Manes.09G072800 Manihot esculenta HOM05D007436 ORTHO05D009398 3.8e-43 179.1 118 75.4
MELO3C007986.2 Cucumis melo HOM05D007436 ORTHO05D009398 1.2e-41 174.1 118 75.4
Gohir.A05G177200 Gossypium hirsutum HOM05D007436 ORTHO05D009398 1.1e-39 167.5 117 69.2
Eucgr.D00973 Eucalyptus grandis HOM05D007436 ORTHO05D009398 8.1e-38 161.4 173 50.9
SGA_v2.0_scaffold49G18215 Striga asiatica HOM05D007436 ORTHO05D009398 1.1e-34 151.0 177 48.0
MCO14G290 Micromonas commoda HOM05D007436 ORTHO05D009398 7.4e-31 138.3 219 39.3
SEGI_34845 Sequoiadendron giganteum HOM05D007436 ORTHO05D009398 1.3e-30 137.5 82 73.2
Cre10.g431850 Chlamydomonas reinhardtii HOM05D007436 ORTHO05D009398 4.8e-30 135.6 136 44.1
PRCOL_00004330 Prasinoderma coloniale HOM05D007436 ORTHO05D009398 1.7e-19 100.5 152 36.8
PRCOL_00006376 Prasinoderma coloniale HOM05D007436 ORTHO05D009398 4.2e-18 95.9 180 36.1
Lj1A1250G59 Lonicera japonica HOM05D007436 ORTHO05D009398 9.0e-13 78.2 39 87.2


User provided reference genes

Program Settings