Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10447 Trifolium pratense HOM05D000470 ORTHO05D051469 6.7e-31 136.7 70 100.0
TPR.G39474 Trifolium pratense HOM05D000470 ORTHO05D051469 5.7e-30 133.7 70 97.1
Psat5g308400 Pisum sativum HOM05D000470 ORTHO05D000348 2.4e-20 101.7 78 70.5
Ca_01008_v3 Cicer arietinum L. HOM05D000470 ORTHO05D000348 2.2e-18 95.1 78 69.2
Lj3g0021539 Lotus japonicus HOM05D000470 ORTHO05D000348 3.8e-18 94.4 78 66.7
FAN02G3900 Fragaria x ananassa HOM05D000470 ORTHO05D000348 6.5e-18 93.6 77 67.5
CANSAT56G3718 Cannabis sativa HOM05D000470 ORTHO05D000348 8.5e-18 93.2 77 64.9
Lj5A81T84 Lonicera japonica HOM05D000470 ORTHO05D000348 8.5e-18 93.2 78 66.7
THA.LOC104813589 Tarenaya hassleriana HOM05D000470 ORTHO05D000348 8.5e-18 93.2 77 68.8
Medtr2g105270 Medicago truncatula HOM05D000470 ORTHO05D000348 1.1e-17 92.8 80 67.5
Oeu051566.1 Olea europaea HOM05D000470 ORTHO05D000348 1.1e-17 92.8 78 66.7
Atru.chr1.2787 Acer truncatum HOM05D000470 ORTHO05D000348 1.4e-17 92.4 77 64.9
Glyma.15G002700 Glycine max HOM05D000470 ORTHO05D000348 1.4e-17 92.4 78 64.1
Phvul.005G183100 Phaseolus vulgaris HOM05D000470 ORTHO05D000348 1.4e-17 92.4 78 64.1
AL1G28170 Arabidopsis lyrata HOM05D000470 ORTHO05D000348 1.9e-17 92.0 77 68.8
CARHR016500 Cardamine hirsuta HOM05D000470 ORTHO05D000348 1.9e-17 92.0 77 68.8
Dinv03574 Davidia involucrata HOM05D000470 ORTHO05D000348 1.9e-17 92.0 78 64.1
FAN05G5206 Fragaria x ananassa HOM05D000470 ORTHO05D000348 1.9e-17 92.0 77 66.2
Lalb_Chr24g0392811 Lupinus albus HOM05D000470 ORTHO05D000348 1.9e-17 92.0 78 62.8
MD17G1224500 Malus domestica HOM05D000470 ORTHO05D000348 1.9e-17 92.0 77 66.2
Sp1g14320 Schrenkiella parvula HOM05D000470 ORTHO05D000348 1.9e-17 92.0 77 68.8
TWI75G0554 Tripterygium wilfordii HOM05D000470 ORTHO05D000348 1.9e-17 92.0 78 65.4
arahy.Tifrunner.gnm1.ann1.XNKC70 Arachis hypogaea HOM05D000470 ORTHO05D000348 2.5e-17 91.7 78 64.1
FvH4_6g28490 Fragaria vesca HOM05D000470 ORTHO05D000348 2.5e-17 91.7 77 66.2
FAN14G5196 Fragaria x ananassa HOM05D000470 ORTHO05D000348 2.5e-17 91.7 77 66.2
QL05p036356 Quercus lobata HOM05D000470 ORTHO05D000348 2.5e-17 91.7 77 64.9
Thecc.06G043600 Theobroma cacao HOM05D000470 ORTHO05D000348 2.5e-17 91.7 77 64.9
AT1G16010 Arabidopsis thaliana HOM05D000470 ORTHO05D000348 3.2e-17 91.3 77 70.1
Carub.0001s1581 Capsella rubella HOM05D000470 ORTHO05D000348 3.2e-17 91.3 77 68.8
Ciclev10025612m.g Citrus clementina HOM05D000470 ORTHO05D000348 3.2e-17 91.3 77 63.6
COL.COLO4_26746 Corchorus olitorius HOM05D000470 ORTHO05D000348 3.2e-17 91.3 77 64.9
Gohir.D06G119200 Gossypium hirsutum HOM05D000470 ORTHO05D000348 3.2e-17 91.3 77 63.6
Gorai.010G136800 Gossypium raimondii HOM05D000470 ORTHO05D000348 3.2e-17 91.3 77 63.6
Potri.001G043200 Populus trichocarpa HOM05D000470 ORTHO05D000348 3.2e-17 91.3 78 64.1
Prupe.3G100200 Prunus persica HOM05D000470 ORTHO05D000348 3.2e-17 91.3 77 64.9
VMungo1080G1689 Vigna mungo HOM05D000470 ORTHO05D000348 3.2e-17 91.3 78 62.8
Gohir.A06G114600 Gossypium hirsutum HOM05D000470 ORTHO05D000348 4.2e-17 90.9 77 63.6
CiPaw.02G162700 Carya illinoinensis HOM05D000470 ORTHO05D000348 5.5e-17 90.5 77 64.9
ClCG10G012880 Citrullus lanatus HOM05D000470 ORTHO05D000348 5.5e-17 90.5 74 67.6
Thhalv10007638m.g Eutrema salsugineum HOM05D000470 ORTHO05D000348 5.5e-17 90.5 77 67.5
RcHm_v2.0_Chr2g0132741 Rosa chinensis HOM05D000470 ORTHO05D000348 5.5e-17 90.5 77 64.9
Sabra01G0029700 Salix brachista HOM05D000470 ORTHO05D000348 5.5e-17 90.5 78 62.8
Sabra03G0134000 Salix brachista HOM05D000470 ORTHO05D000348 5.5e-17 90.5 78 62.8
Sp5g34840 Schrenkiella parvula HOM05D000470 ORTHO05D000348 5.5e-17 90.5 74 68.9
PSO063G0091 Papaver somniferum HOM05D000470 ORTHO05D000348 7.2e-17 90.1 78 62.8
PSO782G0897 Papaver somniferum HOM05D000470 ORTHO05D000348 7.2e-17 90.1 78 62.8
TWI18G1038 Tripterygium wilfordii HOM05D000470 ORTHO05D000348 7.2e-17 90.1 78 64.1
Migut.I00686 Erythranthe guttata HOM05D000470 ORTHO05D000348 9.4e-17 89.7 79 64.6
Eucgr.J03120 Eucalyptus grandis HOM05D000470 ORTHO05D000348 9.4e-17 89.7 78 62.8
Thhalv10018562m.g Eutrema salsugineum HOM05D000470 ORTHO05D000348 1.2e-16 89.4 77 66.2
SGA_v2.0_scaffold5G02791 Striga asiatica HOM05D000470 ORTHO05D000348 1.2e-16 89.4 76 64.5
Aa31LG7G590 Aethionema arabicum HOM05D000470 ORTHO05D000348 1.6e-16 89.0 77 64.9
CARHR073570 Cardamine hirsuta HOM05D000470 ORTHO05D000348 1.6e-16 89.0 77 66.2
TAR626G1352 Trochodendron aralioides HOM05D000470 ORTHO05D000348 1.6e-16 89.0 78 61.5
MD09G1225700 Malus domestica HOM05D000470 ORTHO05D000348 2.1e-16 88.6 77 63.6
Manes.04G101500 Manihot esculenta HOM05D000470 ORTHO05D000348 2.7e-16 88.2 78 61.5
CAN.G1932.5 Capsicum annuum HOM05D000470 ORTHO05D000348 3.6e-16 87.8 81 64.2
MELO3C026733.2 Cucumis melo HOM05D000470 ORTHO05D000348 3.6e-16 87.8 74 66.2
CsaV3_3G032740 Cucumis sativus L. HOM05D000470 ORTHO05D000348 3.6e-16 87.8 74 66.2
Lalb_Chr22g0349401 Lupinus albus HOM05D000470 ORTHO05D000348 3.6e-16 87.8 78 60.3
Nitab4.5_0000886g0030 Nicotiana tabacum HOM05D000470 ORTHO05D000348 3.6e-16 87.8 81 64.2
Nitab4.5_0008962g0020 Nicotiana tabacum HOM05D000470 ORTHO05D000348 3.6e-16 87.8 81 64.2
Sed0019886 Sechium edule HOM05D000470 ORTHO05D000348 3.6e-16 87.8 74 64.9
SGA_v2.0_scaffold37G14691 Striga asiatica HOM05D000470 ORTHO05D000348 3.6e-16 87.8 76 63.2
Actinidia18252 Actinidia chinensis HOM05D000470 ORTHO05D000348 4.7e-16 87.4 77 61.0
Cfa001872 Carpinus fangiana HOM05D000470 ORTHO05D000348 4.7e-16 87.4 77 63.6
Cc04_g05200 Coffea canephora HOM05D000470 ORTHO05D000348 4.7e-16 87.4 78 62.8
TAR383G0368 Trochodendron aralioides HOM05D000470 ORTHO05D000348 4.7e-16 87.4 78 62.8
GSVIVG01015987001 Vitis vinifera HOM05D000470 ORTHO05D000348 4.7e-16 87.4 78 60.3
Duzib235G0162 Durio zibethinus HOM05D000470 ORTHO05D000348 6.1e-16 87.0 77 61.0
HanXRQChr09g0274071 Helianthus annuus HOM05D000470 ORTHO05D000348 6.1e-16 87.0 77 58.4
Nn8g39920 Nelumbo nucifera HOM05D000470 ORTHO05D000348 6.1e-16 87.0 78 61.5
Haze_16676 Corylus avellana HOM05D000470 ORTHO05D000348 8.0e-16 86.7 77 63.6
Duzib192G0862 Durio zibethinus HOM05D000470 ORTHO05D000348 8.0e-16 86.7 77 62.3
ECA232G3944 Erigeron canadensis HOM05D000470 ORTHO05D000348 8.0e-16 86.7 68 64.7
Glyma.13G370900 Glycine max HOM05D000470 ORTHO05D000348 8.0e-16 86.7 78 61.5
Manes.11G068600 Manihot esculenta HOM05D000470 ORTHO05D000348 8.0e-16 86.7 78 62.8
Potri.003G183600 Populus trichocarpa HOM05D000470 ORTHO05D000348 8.0e-16 86.7 78 61.5
Aqoxy7G03386 Aquilegia oxysepala HOM05D000470 ORTHO05D000348 1.0e-15 86.3 79 64.6
HanXRQChr09g0274461 Helianthus annuus HOM05D000470 ORTHO05D000348 1.0e-15 86.3 77 58.4
PGR031G1635 Punica granatum HOM05D000470 ORTHO05D000348 1.0e-15 86.3 77 62.3
Solyc06g068490.3 Solanum lycopersicum HOM05D000470 ORTHO05D000348 1.0e-15 86.3 81 63.0
Sopen06g025740 Solanum pennellii HOM05D000470 ORTHO05D000348 1.0e-15 86.3 81 63.0
PGSC0003DMG401028489 Solanum tuberosum HOM05D000470 ORTHO05D000348 1.0e-15 86.3 81 63.0
Cpa.g.sc10.64 Carica papaya HOM05D000470 ORTHO05D000348 1.4e-15 85.9 78 62.8
MSTRG.22802 Avicennia marina HOM05D000470 ORTHO05D000348 2.3e-15 85.1 75 61.3
BcaB02g06651 Brassica carinata HOM05D000470 ORTHO05D000348 2.3e-15 85.1 78 65.4
BcaB05g25216 Brassica carinata HOM05D000470 ORTHO05D000348 2.3e-15 85.1 70 68.6
vmacro19060 Vaccinium macrocarpon HOM05D000470 ORTHO05D000348 3.0e-15 84.7 75 60.0
CDE05G1469 Ceratophyllum demersum HOM05D000470 ORTHO05D000348 3.9e-15 84.3 78 60.3
Rhsim08G0204400 Rhododendron simsii HOM05D000470 ORTHO05D000348 3.9e-15 84.3 77 58.4
THA.LOC104812417 Tarenaya hassleriana HOM05D000470 ORTHO05D000348 3.9e-15 84.3 77 64.9
BcaC05g25619 Brassica carinata HOM05D000470 ORTHO05D000348 5.2e-15 84.0 79 65.8
C05p14210 Brassica napus HOM05D000470 ORTHO05D000348 5.2e-15 84.0 79 65.8
BolC5t30152H Brassica oleracea HOM05D000470 ORTHO05D000348 5.2e-15 84.0 79 65.8
Hma1.2p1_0109F.1_g052650 Hydrangea macrophylla HOM05D000470 ORTHO05D000348 6.7e-15 83.6 75 61.3
Peaxi162Scf00207g00428 Petunia axillaris HOM05D000470 ORTHO05D000348 8.8e-15 83.2 81 60.5
Sed0024798 Sechium edule HOM05D000470 ORTHO05D000348 8.8e-15 83.2 74 63.5
GSVIVG01015984001 Vitis vinifera HOM05D000470 ORTHO05D000348 1.1e-14 82.8 79 59.5
Oeu004563.2 Olea europaea HOM05D000470 ORTHO05D000348 1.5e-14 82.4 78 59.0
Sc12g0008110 Simmondsia chinensis HOM05D000470 ORTHO05D000348 1.5e-14 82.4 79 55.7
CDE02G3884 Ceratophyllum demersum HOM05D000470 ORTHO05D000348 2.0e-14 82.0 78 59.0
CiPaw.01G255500 Carya illinoinensis HOM05D000470 ORTHO05D000348 2.6e-14 81.6 77 59.7
Gohir.D09G090700 Gossypium hirsutum HOM05D000470 ORTHO05D000348 3.3e-14 81.3 73 60.3
Gorai.006G106900 Gossypium raimondii HOM05D000470 ORTHO05D000348 3.3e-14 81.3 73 60.3
ECA247G0017 Erigeron canadensis HOM05D000470 ORTHO05D000348 4.4e-14 80.9 78 60.3
AT1G80900 Arabidopsis thaliana HOM05D000470 ORTHO05D000348 5.7e-14 80.5 77 61.0
BcaC03g15920 Brassica carinata HOM05D000470 ORTHO05D000348 5.7e-14 80.5 71 67.6
A02p23070 Brassica napus HOM05D000470 ORTHO05D000348 5.7e-14 80.5 71 67.6
A06p12040 Brassica napus HOM05D000470 ORTHO05D000348 5.7e-14 80.5 79 64.6
C02p36820 Brassica napus HOM05D000470 ORTHO05D000348 5.7e-14 80.5 71 67.6
BolC2t09693H Brassica oleracea HOM05D000470 ORTHO05D000348 5.7e-14 80.5 71 67.6
BraA02t07305Z Brassica rapa HOM05D000470 ORTHO05D000348 5.7e-14 80.5 71 67.6
BraA06t24373Z Brassica rapa HOM05D000470 ORTHO05D000348 5.7e-14 80.5 79 64.6
DCAR_025554 Daucus carota HOM05D000470 ORTHO05D000348 5.7e-14 80.5 76 60.5
ECA246G3628 Erigeron canadensis HOM05D000470 ORTHO05D000348 5.7e-14 80.5 77 55.8
Eucgr.F03969 Eucalyptus grandis HOM05D000470 ORTHO05D000348 5.7e-14 80.5 74 59.5
MSTRG.11187 Avicennia marina HOM05D000470 ORTHO05D000348 7.4e-14 80.1 78 59.0
Lsat_1_v5_gn_4_86861 Lactuca sativa HOM05D000470 ORTHO05D000348 9.7e-14 79.7 71 57.7
AL2G40480 Arabidopsis lyrata HOM05D000470 ORTHO05D000348 1.3e-13 79.3 77 61.0
MBI14_g09100_MAGBIO Magnolia biondii HOM05D000470 ORTHO05D000348 1.3e-13 79.3 78 59.0
vmacro16848 Vaccinium macrocarpon HOM05D000470 ORTHO05D000348 1.7e-13 79.0 77 59.7
DCAR_016306 Daucus carota HOM05D000470 ORTHO05D000348 2.2e-13 78.6 77 55.8
HanXRQChr05g0153741 Helianthus annuus HOM05D000470 ORTHO05D000348 2.2e-13 78.6 77 53.2
TAR636G1903 Trochodendron aralioides HOM05D000470 ORTHO05D000348 4.8e-13 77.4 78 56.4
Ah.15g090330 Amaranthus hybridus HOM05D000470 ORTHO05D000348 6.3e-13 77.0 79 57.0
ATR0580G299 Amborella trichopoda HOM05D000470 ORTHO05D000348 6.3e-13 77.0 77 53.2
Hund06802 Selenicereus undatus HOM05D000470 ORTHO05D000348 6.3e-13 77.0 79 55.7
C06p53610 Brassica napus HOM05D000470 ORTHO05D000348 8.2e-13 76.6 55 72.7
BolC6t40377H Brassica oleracea HOM05D000470 ORTHO05D000348 1.1e-12 76.3 55 72.7
BraA07t31986Z Brassica rapa HOM05D000470 ORTHO05D000348 1.1e-12 76.3 55 72.7
Rhsim12G0186700 Rhododendron simsii HOM05D000470 ORTHO05D000348 1.4e-12 75.9 78 60.3
CAN.G22.50 Capsicum annuum HOM05D000470 ORTHO05D000348 1.8e-12 75.5 81 56.8
EL10Ac7g17032 Beta vulgaris HOM05D000470 ORTHO05D000348 2.4e-12 75.1 75 58.7
BcaC08g47536 Brassica carinata HOM05D000470 ORTHO05D000348 2.4e-12 75.1 55 70.9
Os06g0650800 Oryza sativa ssp. japonica HOM05D000470 ORTHO05D000348 2.4e-12 75.1 79 54.4
Nn2g12406 Nelumbo nucifera HOM05D000470 ORTHO05D000348 3.1e-12 74.7 77 57.1
unitig_52.g17465 Utricularia gibba HOM05D000470 ORTHO05D000348 3.1e-12 74.7 79 57.0
BcaB02g08713 Brassica carinata HOM05D000470 ORTHO05D000348 4.1e-12 74.3 56 73.2
SHI11313 Sapria himalayana HOM05D000470 ORTHO05D000348 4.1e-12 74.3 78 53.8
Actinidia36872 Actinidia chinensis HOM05D000470 ORTHO05D000348 5.3e-12 73.9 78 57.7
AUR62006325 Chenopodium quinoa HOM05D000470 ORTHO05D000348 5.3e-12 73.9 79 54.4
AUR62026364 Chenopodium quinoa HOM05D000470 ORTHO05D000348 5.3e-12 73.9 79 54.4
arahy.Tifrunner.gnm1.ann1.UQ7PKN Arachis hypogaea HOM05D000470 ORTHO05D000348 7.0e-12 73.6 55 67.3
A07p44790 Brassica napus HOM05D000470 ORTHO05D000348 1.6e-11 72.4 55 70.9
Aa31LG4G1210 Aethionema arabicum HOM05D000470 ORTHO05D000348 2.0e-11 72.0 78 56.4
HanXRQChr02g0033991 Helianthus annuus HOM05D000470 ORTHO05D000348 2.0e-11 72.0 71 57.7
HPP92_010740 Vanilla planifolia HOM05D000470 ORTHO05D000348 2.6e-11 71.6 55 63.6
arahy.Tifrunner.gnm1.ann1.FURL1J Arachis hypogaea HOM05D000470 ORTHO05D000348 5.9e-11 70.5 55 65.5
HPP92_011632 Vanilla planifolia HOM05D000470 ORTHO05D000348 7.7e-11 70.1 78 51.3
HPP92_017171 Vanilla planifolia HOM05D000470 ORTHO05D000348 1.0e-10 69.7 55 61.8
Lsat_1_v5_gn_1_30920 Lactuca sativa HOM05D000470 ORTHO05D000348 2.2e-10 68.6 76 52.6
SEGI_16818 Sequoiadendron giganteum HOM05D000470 ORTHO05D000348 2.2e-10 68.6 78 47.4
Ah.08g209850 Amaranthus hybridus HOM05D000470 ORTHO05D000348 2.9e-10 68.2 79 50.6
Zm00001eb388680 Zea mays HOM05D000470 ORTHO05D000348 2.9e-10 68.2 77 50.6
DCAR_025555 Daucus carota HOM05D000470 ORTHO05D000348 5.0e-10 67.4 55 63.6
Zm00001eb274990 Zea mays HOM05D000470 ORTHO05D000348 5.0e-10 67.4 77 49.4
Rhsim12G0183700 Rhododendron simsii HOM05D000470 ORTHO05D000348 6.5e-10 67.0 78 56.4
Zm00001eb078200 Zea mays HOM05D000470 ORTHO05D000348 1.1e-09 66.2 55 63.6
Thecc.06G043300 Theobroma cacao HOM05D000470 ORTHO05D000348 4.2e-09 64.3 77 49.4
Lsat_1_v5_gn_5_8301 Lactuca sativa HOM05D000470 ORTHO05D000348 3.6e-08 61.2 78 51.3
HanXRQChr08g0235881 Helianthus annuus HOM05D000470 ORTHO05D000348 2.3e-07 58.5 80 45.0
Hma1.2p1_0329F.1_g127180 Hydrangea macrophylla HOM05D000470 ORTHO05D000348 4.0e-07 57.8 43 72.1
DCAR_025558 Daucus carota HOM05D000470 ORTHO05D000348 5.7e-06 53.9 55 56.4
CAN.G707.2 Capsicum annuum HOM05D000470 ORTHO05D000348 7.5e-06 53.5 56 51.8
PSO017G6589 Papaver somniferum HOM05D000470 ORTHO05D000348 9.7e-06 53.1 55 50.9
Thecc.06G043500 Theobroma cacao HOM05D000470 ORTHO05D000348 9.7e-06 53.1 54 59.3


User provided reference genes

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