Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 1.4e-54 216.1 112 100.0
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 7.6e-53 210.3 112 97.3
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 3.8e-52 208.0 113 96.5
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 1.0e-49 199.9 113 92.9
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.5e-48 196.1 113 90.3
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 9.0e-46 186.8 99 99.0
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 5.0e-44 181.0 108 86.1
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 6.5e-44 180.6 108 87.0
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 2.5e-43 178.7 108 85.2
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 2.5e-43 178.7 116 81.9
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 7.2e-43 177.2 108 83.3
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 9.3e-43 176.8 108 83.3
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 1.2e-42 176.4 101 86.1
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 2.1e-42 175.6 108 83.3
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 2.7e-42 175.3 105 81.0
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 2.7e-42 175.3 105 81.0
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 4.6e-42 174.5 102 87.3
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 7.9e-42 173.7 108 77.8
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 8.7e-41 170.2 106 80.2
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 1.1e-40 169.9 108 78.7
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 1.5e-40 169.5 103 81.6
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 2.5e-40 168.7 106 79.2
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 2.5e-40 168.7 108 79.6
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 2.5e-40 168.7 108 79.6
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 2.5e-40 168.7 102 83.3
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 3.3e-40 168.3 108 79.6
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 9.7e-40 166.8 106 78.3
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 1.7e-39 166.0 102 79.4
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 2.2e-39 165.6 100 80.0
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.2e-39 165.6 106 78.3
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 2.8e-39 165.2 101 78.2
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 3.7e-39 164.9 101 81.2
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 4.8e-39 164.5 107 75.7
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 8.2e-39 163.7 108 75.0
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 1.1e-38 163.3 107 75.7
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 1.4e-38 162.9 107 76.6
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 1.8e-38 162.5 108 74.1
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 2.4e-38 162.2 103 78.6
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 3.1e-38 161.8 102 76.5
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 4.1e-38 161.4 102 77.5
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 4.1e-38 161.4 102 77.5
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 4.1e-38 161.4 102 77.5
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 4.1e-38 161.4 111 75.7
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 4.1e-38 161.4 107 75.7
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 6.9e-38 160.6 109 80.7
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 6.9e-38 160.6 106 76.4
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 9.1e-38 160.2 112 73.2
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 9.1e-38 160.2 112 73.2
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 1.2e-37 159.8 102 76.5
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.2e-37 159.8 102 76.5
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 1.2e-37 159.8 105 77.1
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 1.2e-37 159.8 105 77.1
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.2e-37 159.8 102 78.4
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.5e-37 159.5 102 75.5
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.5e-37 159.5 102 73.5
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 2.0e-37 159.1 108 76.9
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 2.6e-37 158.7 107 74.8
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 4.5e-37 157.9 105 76.2
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 4.5e-37 157.9 102 75.5
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 7.7e-37 157.1 108 75.9
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 7.7e-37 157.1 110 75.5
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 1.0e-36 156.8 107 73.8
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 1.3e-36 156.4 108 75.0
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.3e-36 156.4 107 74.8
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.7e-36 156.0 107 74.8
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.7e-36 156.0 107 73.8
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.7e-36 156.0 105 75.2
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.7e-36 156.0 105 75.2
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 2.9e-36 155.2 101 76.2
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 5.0e-36 154.5 105 77.1
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 6.5e-36 154.1 103 77.7
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 2.5e-35 152.1 111 72.1
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 2.5e-35 152.1 108 73.1
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 3.2e-35 151.8 111 72.1
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 4.2e-35 151.4 107 73.8
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 5.5e-35 151.0 107 72.9
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 9.4e-35 150.2 109 71.6
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 3.6e-34 148.3 103 73.8
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 4.7e-34 147.9 109 69.7
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 6.1e-34 147.5 107 72.0
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 7.9e-34 147.1 109 70.6
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 7.9e-34 147.1 107 72.0
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 1.0e-33 146.7 109 69.7
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 1.0e-33 146.7 109 69.7
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 1.0e-33 146.7 109 69.7
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 1.0e-33 146.7 107 69.2
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 1.8e-33 146.0 107 68.2
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 1.8e-33 146.0 107 69.2
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 1.8e-33 146.0 99 76.8
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 2.3e-33 145.6 106 70.8
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 3.0e-33 145.2 110 69.1
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 3.0e-33 145.2 109 69.7
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 3.9e-33 144.8 106 72.6
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 6.7e-33 144.1 116 74.1
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 6.7e-33 144.1 109 67.9
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 8.8e-33 143.7 102 69.6
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 8.8e-33 143.7 90 74.4
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 1.1e-32 143.3 109 67.9
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 1.1e-32 143.3 109 67.9
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 1.5e-32 142.9 99 74.7
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 1.5e-32 142.9 105 67.6
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 5.7e-32 141.0 107 65.4
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.3e-31 139.8 104 70.2
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.3e-31 139.8 116 71.6
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 1.7e-31 139.4 107 68.2
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 1.7e-31 139.4 94 76.6
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 3.7e-31 138.3 105 65.7
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 4.8e-31 137.9 111 66.7
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 8.2e-31 137.1 94 73.4
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 1.4e-30 136.3 107 63.6
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 6.9e-30 134.0 102 66.7
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 1.5e-29 132.9 108 67.6
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 2.0e-29 132.5 80 81.2
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 2.0e-29 132.5 105 64.8
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.6e-29 132.1 107 63.6
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 2.6e-29 132.1 81 86.4
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 7.7e-29 130.6 105 64.8
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 2.2e-28 129.0 101 60.4
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 5.0e-28 127.9 103 65.0
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.9e-27 125.9 104 63.5
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.2e-26 123.2 105 61.9
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 2.3e-25 119.0 109 59.6
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 5.7e-24 114.4 105 61.0
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 5.7e-24 114.4 105 61.0
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 3.7e-23 111.7 102 56.9
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 4.8e-23 111.3 108 55.6
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 6.3e-23 110.9 110 55.5
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 2.4e-22 109.0 116 55.2
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 4.1e-22 108.2 87 66.7
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 7.0e-22 107.5 108 54.6
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 9.1e-22 107.1 109 54.1
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 9.1e-22 107.1 105 55.2
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 2.0e-21 105.9 58 96.6
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 2.6e-21 105.5 107 54.2
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 2.6e-21 105.5 104 54.8
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 3.5e-21 105.1 104 56.7
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 3.5e-21 105.1 52 96.2
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 5.9e-21 104.4 107 55.1
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 1.3e-20 103.2 103 54.4
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 1.7e-20 102.8 87 67.8
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 6.5e-20 100.9 109 53.2
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.9e-19 99.4 104 54.8
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 3.6e-18 95.1 101 47.5
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 4.0e-17 91.7 96 56.2
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 2.0e-16 89.4 78 64.1
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 1.7e-15 86.3 102 49.0
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 2.2e-15 85.9 58 81.0
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 6.3e-15 84.3 107 48.6
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 7.0e-14 80.9 68 58.8
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 1.2e-13 80.1 58 75.9
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 1.6e-13 79.7 93 43.0
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 2.7e-13 79.0 109 42.2
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.5e-13 78.6 58 70.7
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 5.5e-11 71.2 51 72.5
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 1.2e-10 70.1 67 55.2
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 2.7e-10 68.9 67 59.7
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 8.0e-10 67.4 107 38.3
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.0e-09 65.5 40 77.5
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 7.5e-08 60.8 96 42.7
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.7e-07 58.5 58 56.9
Thecc.09G051000 Theobroma cacao HOM05D004041 ORTHO05D004564 1.1e-06 57.0 55 50.9
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 3.1e-06 55.5 64 46.9


User provided reference genes

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