Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 0.0e+00 1477.6 746 100.0
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 0.0e+00 1282.7 748 87.6
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 0.0e+00 1215.7 748 84.4
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 4.7e-308 1060.8 757 74.4
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 8.9e-307 1056.6 764 73.6
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 1.9e-304 1048.9 767 72.4
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 4.1e-304 1047.7 767 72.5
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 6.0e-303 1043.9 717 76.3
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 6.8e-299 1030.4 716 75.1
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 2.1e-295 1018.8 751 72.0
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 1.7e-294 1015.8 672 77.5
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 1.9e-248 862.8 748 64.7
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 2.8e-244 849.0 812 59.5
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 1.8e-238 829.7 770 60.9
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.5e-237 826.6 764 60.2
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 3.1e-235 818.9 775 59.9
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 3.0e-230 802.4 797 57.6
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 8.8e-230 800.8 731 60.9
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 3.3e-229 798.9 767 58.9
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 1.7e-228 796.6 729 61.2
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 1.4e-227 793.5 790 57.3
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 1.6e-226 790.0 782 58.4
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 4.5e-226 788.5 764 57.3
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 3.8e-225 785.4 766 57.3
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 3.6e-223 778.9 765 57.6
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 4.7e-223 778.5 778 57.1
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 6.1e-223 778.1 807 55.5
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 4.4e-221 771.9 777 57.3
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 8.3e-220 767.7 719 58.7
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 1.8e-219 766.5 753 56.8
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 2.0e-218 763.1 767 56.6
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 1.0e-217 760.8 772 56.9
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 3.4e-213 745.7 674 60.8
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 2.4e-211 739.6 764 56.0
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 3.1e-211 739.2 711 57.5
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 3.1e-211 739.2 757 55.7
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 9.1e-211 737.6 761 54.9
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 3.8e-209 732.3 688 58.7
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 6.6e-209 731.5 764 55.4
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 2.5e-208 729.6 762 54.7
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 5.2e-206 721.8 767 55.1
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 8.9e-206 721.1 599 63.6
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 4.4e-205 718.8 708 56.5
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 6.4e-204 714.9 649 60.6
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 8.3e-204 714.5 779 54.0
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 9.2e-203 711.1 579 63.9
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 5.2e-198 695.3 617 60.1
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 2.9e-196 689.5 698 56.2
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 3.7e-196 689.1 763 53.3
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 2.4e-195 686.4 759 52.6
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 6.0e-194 681.8 768 52.3
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 6.0e-194 681.8 806 51.4
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 1.7e-193 680.2 757 52.3
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 2.3e-193 679.9 734 52.7
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 4.3e-192 675.6 756 52.5
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 5.6e-192 675.2 765 52.3
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 9.5e-192 674.5 775 51.6
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 9.5e-192 674.5 809 51.4
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 1.2e-191 674.1 789 51.3
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 6.2e-191 671.8 777 52.1
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.4e-190 670.6 666 56.6
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 3.1e-190 669.5 772 51.2
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 3.1e-190 669.5 765 50.5
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 2.4e-187 659.8 766 51.6
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 9.2e-187 657.9 780 51.8
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 1.6e-186 657.1 769 51.8
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 1.0e-185 654.4 771 50.8
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 1.5e-184 650.6 778 51.8
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 5.6e-184 648.7 699 53.6
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 6.2e-183 645.2 726 52.1
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.8e-182 643.7 711 52.3
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 1.5e-181 640.6 756 49.7
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 2.6e-181 639.8 689 52.1
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 4.4e-181 639.0 758 50.3
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 4.4e-181 639.0 781 48.8
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 4.9e-180 635.6 756 50.1
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 3.2e-179 632.9 790 48.6
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 1.6e-178 630.6 657 54.3
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 1.3e-177 627.5 785 49.7
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 2.3e-177 626.7 783 49.6
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 1.5e-176 624.0 760 49.3
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 4.7e-175 619.0 781 49.4
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 4.0e-174 615.9 660 54.1
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 5.2e-174 615.5 777 49.3
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 4.9e-172 609.0 782 47.8
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 8.4e-172 608.2 823 47.8
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 2.3e-169 600.1 783 47.1
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 5.1e-169 599.0 674 51.2
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 6.6e-169 598.6 488 61.7
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 1.2e-162 577.8 648 50.0
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 6.6e-161 572.0 771 46.6
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 6.9e-150 535.4 713 47.3
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.3e-145 521.2 507 56.8
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 1.1e-144 518.1 424 64.2
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 3.2e-131 473.4 638 46.2
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 9.4e-131 471.9 716 45.4
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 7.4e-128 462.2 555 49.9
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 2.8e-127 460.3 431 60.8
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 4.1e-126 456.4 728 40.8
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 2.4e-118 430.6 598 44.5
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 1.2e-117 428.3 677 40.2
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 8.0e-114 415.6 317 70.0
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 9.7e-112 408.7 725 38.3
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 9.1e-110 402.1 762 36.5
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 2.3e-97 360.9 509 44.8
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 2.1e-90 337.8 480 45.0
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 4.1e-78 297.0 800 30.4
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 1.2e-72 278.9 380 45.3
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 2.6e-72 277.7 279 58.4
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 7.8e-69 266.2 734 31.2
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 5.4e-54 216.9 224 57.6
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 5.4e-54 216.9 146 80.8
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 1.5e-48 198.7 358 39.7
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 2.0e-48 198.4 251 45.8
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 8.1e-42 176.4 204 49.0
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 1.2e-40 172.6 200 55.5
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 2.7e-37 161.4 249 48.6
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 3.7e-34 151.0 563 25.4
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 6.2e-34 150.2 621 24.3
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 1.8e-25 122.1 187 40.1
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 6.5e-23 113.6 134 53.0
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 1.5e-19 102.4 99 58.6
Psat6g137760 Pisum sativum HOM05D003415 ORTHO05D001594 1.5e-16 92.4 68 66.2
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 1.1e-14 86.3 112 48.2
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 2.5e-14 85.1 75 61.3
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 2.7e-13 81.6 99 43.4
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 8.8e-12 76.6 191 27.7
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 4.4e-11 74.3 101 46.5
BcaC04g23967 Brassica carinata HOM05D000463 ORTHO05D001294 9.4e-06 56.6 60 40.0
C09p02880 Brassica napus HOM05D000463 ORTHO05D001294 9.4e-06 56.6 60 40.0
BolC9t53213H Brassica oleracea HOM05D000463 ORTHO05D001294 9.4e-06 56.6 60 40.0


User provided reference genes

Program Settings