Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 2.7e-87 325.5 189 100.0
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 2.5e-72 275.8 194 83.5
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 2.3e-65 252.7 194 80.4
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 1.5e-64 250.0 191 79.1
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 3.6e-63 245.4 191 80.1
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 2.6e-61 239.2 193 75.1
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 2.2e-60 236.1 191 70.7
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 2.2e-60 236.1 192 76.6
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 1.4e-59 233.4 196 72.4
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 5.4e-59 231.5 191 72.3
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 1.2e-58 230.3 192 72.9
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 2.1e-58 229.6 192 72.4
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 4.6e-58 228.4 195 72.3
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 2.3e-57 226.1 192 71.9
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 3.9e-57 225.3 190 71.1
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 3.9e-57 225.3 188 67.6
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 5.1e-57 224.9 191 69.6
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 8.6e-57 224.2 188 70.7
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 8.6e-57 224.2 188 71.8
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 1.9e-56 223.0 191 66.5
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 3.3e-56 222.2 203 69.0
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 3.3e-56 222.2 191 72.3
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 2.1e-55 219.5 197 66.5
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 1.4e-54 216.9 194 70.1
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 4.0e-54 215.3 193 69.9
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 2.0e-53 213.0 190 66.8
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 2.6e-53 212.6 190 70.0
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.3e-52 210.3 189 66.7
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 1.7e-52 209.9 189 66.1
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 3.7e-52 208.8 189 69.3
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 6.4e-52 208.0 192 68.2
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 8.3e-52 207.6 189 67.7
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 1.1e-51 207.2 186 68.3
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.4e-51 206.8 189 66.1
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 4.1e-51 205.3 190 68.4
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 5.4e-51 204.9 194 66.5
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.2e-50 203.8 189 65.1
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 1.6e-50 203.4 195 67.2
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 6.0e-50 201.4 189 67.7
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 7.8e-50 201.1 191 67.5
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 7.3e-48 194.5 190 65.8
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 7.3e-48 194.5 194 68.0
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 9.5e-48 194.1 194 63.9
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 2.1e-47 193.0 187 67.4
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 2.1e-47 193.0 190 65.8
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 2.8e-47 192.6 192 66.7
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 2.8e-47 192.6 188 63.8
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 3.6e-47 192.2 189 61.4
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 4.7e-47 191.8 193 62.2
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 1.1e-46 190.7 187 67.4
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 1.8e-46 189.9 195 63.1
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 3.1e-46 189.1 187 66.3
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 5.2e-46 188.3 195 62.1
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 5.2e-46 188.3 187 66.3
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 5.2e-46 188.3 180 65.6
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 5.2e-46 188.3 191 64.9
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 6.8e-46 188.0 190 64.7
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 1.5e-45 186.8 192 64.1
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 2.0e-45 186.4 191 62.3
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 2.6e-45 186.0 189 65.6
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 3.4e-45 185.7 190 64.2
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 5.8e-45 184.9 190 64.2
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 5.8e-45 184.9 189 63.0
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 7.6e-45 184.5 188 63.3
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 9.9e-45 184.1 187 57.8
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 2.9e-44 182.6 188 64.4
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 3.8e-44 182.2 190 63.7
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 6.4e-44 181.4 190 64.2
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 1.1e-43 180.6 200 58.0
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 7.1e-43 177.9 191 63.4
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 9.2e-43 177.6 190 63.2
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 1.6e-42 176.8 189 61.4
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 6.0e-42 174.9 190 62.1
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 6.0e-42 174.9 193 61.1
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 3.0e-41 172.6 191 61.8
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 6.6e-41 171.4 191 60.2
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 6.6e-41 171.4 191 60.2
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 6.6e-41 171.4 191 60.2
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 6.6e-41 171.4 183 62.3
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 8.7e-41 171.0 189 61.9
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 5.6e-40 168.3 188 60.6
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 7.3e-40 167.9 203 59.6
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 1.2e-39 167.2 191 59.2
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 1.2e-39 167.2 191 59.2
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 8.1e-39 164.5 141 69.5
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.4e-38 163.7 188 62.2
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 1.8e-38 163.3 187 58.8
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 2.4e-38 162.9 192 60.9
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 6.9e-38 161.4 190 60.0
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 9.0e-38 161.0 185 53.0
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 1.2e-37 160.6 188 59.0
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 1.5e-37 160.2 188 59.6
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.5e-37 160.2 190 59.5
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 2.0e-37 159.8 164 58.5
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 2.0e-37 159.8 189 59.3
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 3.4e-37 159.1 191 59.2
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 3.4e-37 159.1 193 57.5
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 9.9e-37 157.5 188 59.6
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 1.7e-36 156.8 188 50.5
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 2.9e-36 156.0 188 58.5
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 2.9e-36 156.0 187 58.3
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 3.8e-36 155.6 190 57.9
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 6.4e-36 154.8 191 57.6
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.9e-35 153.3 135 68.9
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 2.4e-35 152.9 189 57.7
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 2.4e-35 152.9 189 57.7
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 3.2e-35 152.5 187 57.8
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 4.2e-35 152.1 164 56.1
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 1.2e-34 150.6 164 56.1
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.0e-33 147.5 135 67.4
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 1.1e-32 144.1 188 54.8
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 1.1e-32 144.1 155 63.9
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 9.6e-32 141.0 183 48.6
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 7.6e-29 131.3 181 48.6
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 9.9e-29 131.0 115 60.9
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 9.9e-29 131.0 148 62.2
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 3.8e-28 129.0 151 60.9
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 4.9e-28 128.6 132 57.6
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 6.4e-28 128.3 106 69.8
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 2.4e-27 126.3 151 60.9
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.6e-26 123.6 134 57.5
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 4.6e-26 122.1 120 58.3
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 2.3e-25 119.8 202 51.0
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 3.9e-25 119.0 119 55.5
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 4.8e-23 112.1 118 65.3
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 1.7e-20 103.6 122 51.6
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 2.2e-20 103.2 113 57.5
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 3.8e-20 102.4 185 49.2
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 8.7e-17 91.3 105 64.8
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 4.3e-16 89.0 133 49.6
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 1.8e-14 83.6 85 55.3
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 6.9e-14 81.6 112 58.9
CBR_g4589 Chara braunii HOM05D005729 ORTHO05D007026 3.8e-12 75.9 181 45.9
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 1.0e-09 67.8 65 61.5
Lalb_Chr14g0364061 Lupinus albus HOM05D005729 ORTHO05D007026 6.7e-09 65.1 59 74.6
FvH4_3g27021 Fragaria vesca HOM05D005729 ORTHO05D007026 2.8e-07 59.7 66 53.0
Atru.chr6.2684 Acer truncatum HOM05D005729 ORTHO05D007026 1.4e-06 57.4 59 52.5


User provided reference genes

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