Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 2.2e-120 435.6 223 100.0
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 4.0e-85 318.5 208 80.3
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.2e-76 290.4 211 73.0
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 9.2e-58 227.6 216 59.7
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 2.5e-55 219.5 214 60.3
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 1.2e-54 217.2 214 58.9
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 2.1e-46 189.9 192 56.8
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 8.1e-38 161.4 164 54.9
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 6.0e-33 145.2 209 45.5
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 1.3e-32 144.1 213 43.2
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 8.7e-32 141.4 207 41.1
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 9.6e-31 137.9 214 39.7
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 4.8e-30 135.6 208 40.4
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 6.2e-30 135.2 214 40.7
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.1e-29 134.4 130 57.7
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.4e-29 134.0 216 40.3
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 3.1e-29 132.9 141 55.3
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.5e-28 130.6 214 38.3
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 3.4e-28 129.4 212 40.1
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 1.3e-27 127.5 209 40.7
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 8.4e-27 124.8 227 37.0
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.1e-26 124.4 210 38.6
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 7.1e-26 121.7 212 40.6
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 7.1e-26 121.7 178 41.0
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 9.3e-26 121.3 148 48.0
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 1.6e-25 120.6 210 39.0
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 2.1e-25 120.2 172 44.2
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 2.7e-25 119.8 211 40.3
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 3.5e-25 119.4 206 42.7
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 4.6e-25 119.0 213 37.1
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 1.0e-24 117.9 207 37.2
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 1.3e-24 117.5 209 38.8
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 3.0e-24 116.3 213 34.7
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 5.1e-24 115.5 209 37.8
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 1.1e-23 114.4 224 35.3
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 2.5e-23 113.2 230 33.5
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.6e-22 110.5 223 36.3
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 1.6e-22 110.5 174 41.4
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 3.6e-22 109.4 210 34.8
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 4.8e-22 109.0 219 37.9
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 4.8e-22 109.0 210 34.3
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 6.2e-22 108.6 206 37.4
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 6.2e-22 108.6 225 33.3
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 8.1e-22 108.2 206 35.4
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 8.1e-22 108.2 222 33.8
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 1.1e-21 107.8 214 33.6
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 1.1e-21 107.8 219 34.2
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 1.1e-21 107.8 207 36.7
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 1.1e-21 107.8 218 34.9
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 1.1e-21 107.8 223 35.9
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 1.4e-21 107.5 214 35.5
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 1.8e-21 107.1 200 37.5
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 1.8e-21 107.1 222 33.8
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 1.8e-21 107.1 210 34.3
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 2.4e-21 106.7 222 34.2
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 3.1e-21 106.3 209 36.4
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 6.9e-21 105.1 213 35.7
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 9.0e-21 104.8 215 34.4
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 9.0e-21 104.8 212 35.8
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 9.0e-21 104.8 226 33.6
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 1.5e-20 104.0 206 34.5
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 2.0e-20 103.6 213 34.3
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 2.0e-20 103.6 208 34.1
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 2.6e-20 103.2 196 39.8
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 3.4e-20 102.8 209 38.8
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 4.5e-20 102.4 216 35.2
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 4.5e-20 102.4 107 51.4
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 4.5e-20 102.4 212 32.1
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 5.8e-20 102.1 210 34.3
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 7.6e-20 101.7 206 34.5
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 9.9e-20 101.3 206 34.5
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 9.9e-20 101.3 206 34.5
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 1.7e-19 100.5 139 42.4
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 2.2e-19 100.1 210 33.3
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 2.2e-19 100.1 208 32.2
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 2.9e-19 99.8 217 32.7
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 2.9e-19 99.8 217 32.7
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 2.9e-19 99.8 208 34.6
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 2.9e-19 99.8 135 42.2
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 3.8e-19 99.4 214 34.6
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 4.9e-19 99.0 208 34.6
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 4.9e-19 99.0 212 31.6
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 6.4e-19 98.6 212 33.0
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 2.4e-18 96.7 220 32.3
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 3.2e-18 96.3 120 45.0
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 3.2e-18 96.3 209 34.0
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 4.2e-18 95.9 219 33.3
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 4.2e-18 95.9 128 44.5
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 4.2e-18 95.9 221 34.4
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 5.5e-18 95.5 124 43.5
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 7.1e-18 95.1 207 32.9
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 7.1e-18 95.1 133 42.9
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 9.3e-18 94.7 103 47.6
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 9.3e-18 94.7 130 40.8
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 2.1e-17 93.6 216 33.3
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 2.1e-17 93.6 207 32.9
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 2.1e-17 93.6 161 38.5
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 2.7e-17 93.2 160 37.5
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 4.6e-17 92.4 208 32.2
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 6.0e-17 92.0 208 30.8
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.0e-16 91.3 136 39.0
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 1.3e-16 90.9 214 33.2
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 1.8e-16 90.5 167 38.9
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.8e-16 90.5 215 32.1
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 2.3e-16 90.1 211 33.2
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 3.9e-16 89.4 218 32.6
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 5.1e-16 89.0 211 31.3
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 8.7e-16 88.2 218 31.7
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 8.7e-16 88.2 172 34.3
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 1.1e-15 87.8 145 40.7
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 7.4e-15 85.1 259 29.3
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 9.6e-15 84.7 198 34.3
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 1.4e-13 80.9 211 31.8
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 2.4e-13 80.1 219 31.1
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 5.3e-13 79.0 145 35.9
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 5.3e-13 79.0 145 35.9
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 1.2e-12 77.8 150 34.7
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 3.4e-12 76.3 145 35.2
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 3.4e-12 76.3 145 35.2
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 1.3e-11 74.3 103 38.8
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 1.7e-11 73.9 90 44.4
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 2.2e-11 73.6 194 30.4
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 2.9e-11 73.2 93 37.6
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 3.8e-11 72.8 100 42.0
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.9e-10 70.5 314 24.2
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 2.5e-10 70.1 117 35.9
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 4.2e-10 69.3 92 44.6
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 9.3e-10 68.2 206 28.6
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 9.3e-10 68.2 69 52.2
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 2.7e-09 66.6 93 37.6
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 6.0e-09 65.5 82 46.3
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 6.7e-08 62.0 110 37.3
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 1.9e-07 60.5 185 26.5
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 4.3e-07 59.3 138 33.3
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 7.4e-07 58.5 94 36.2
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 1.3e-06 57.8 74 40.5
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 2.8e-06 56.6 124 33.9
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 8.2e-06 55.1 74 40.5


User provided reference genes

Program Settings