Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 1.0e-120 436.8 226 100.0
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 1.1e-101 373.6 233 88.0
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 1.1e-101 373.6 233 88.0
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 3.7e-99 365.2 224 83.9
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 1.5e-87 326.6 229 74.2
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 4.3e-87 325.1 228 77.2
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 5.2e-85 318.2 229 72.5
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 1.7e-83 313.2 232 73.3
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 4.9e-83 311.6 235 70.6
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 5.8e-76 288.1 228 70.2
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 5.8e-76 288.1 228 70.2
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 8.4e-75 284.3 231 68.0
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 1.4e-74 283.5 231 67.5
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 7.9e-57 224.6 230 59.1
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 5.1e-56 221.9 229 55.9
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 7.4e-55 218.0 232 54.7
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 1.6e-54 216.9 250 52.4
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 4.8e-54 215.3 250 52.0
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.1e-53 214.2 248 52.4
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 1.4e-53 213.8 234 57.3
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 2.4e-53 213.0 228 56.6
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 3.1e-53 212.6 235 57.0
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 3.1e-53 212.6 230 56.5
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 6.9e-53 211.5 231 56.3
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 1.2e-52 210.7 239 53.6
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 1.5e-52 210.3 214 57.9
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.3e-51 207.2 253 49.8
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 1.7e-51 206.8 230 52.6
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 8.4e-51 204.5 239 54.4
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.1e-50 204.1 229 53.7
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 1.1e-50 204.1 245 53.5
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 2.5e-50 203.0 228 50.0
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 2.5e-50 203.0 251 52.6
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 4.2e-50 202.2 234 52.6
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 6.1e-49 198.4 231 53.2
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 7.9e-49 198.0 235 54.9
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.3e-48 196.4 231 52.8
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 3.0e-48 196.1 219 53.0
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.9e-48 195.7 228 52.6
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.9e-48 195.7 228 52.6
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 6.7e-48 194.9 236 51.3
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.5e-47 193.7 232 49.1
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 1.9e-47 193.4 230 53.0
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 3.3e-47 192.6 238 57.1
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 3.3e-47 192.6 232 56.5
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 5.7e-47 191.8 228 49.6
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 1.6e-46 190.3 226 49.1
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 2.2e-46 189.9 241 52.3
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 2.8e-46 189.5 225 53.8
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 6.3e-46 188.3 254 46.9
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 8.2e-46 188.0 238 55.5
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 3.1e-45 186.0 237 48.5
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 4.1e-45 185.7 230 51.3
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 5.3e-45 185.3 237 48.1
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 6.9e-45 184.9 230 50.4
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.5e-44 183.7 237 48.9
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 1.5e-44 183.7 244 48.8
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 1.5e-44 183.7 234 50.9
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.5e-44 183.7 226 51.8
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.6e-44 183.0 231 50.2
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 3.4e-44 182.6 233 50.2
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 3.4e-44 182.6 237 48.9
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.4e-44 182.6 230 49.1
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 4.5e-44 182.2 227 50.7
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 5.9e-44 181.8 240 49.6
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 1.0e-43 181.0 238 52.9
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.2e-43 179.9 237 47.3
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.2e-43 179.9 230 47.8
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 2.9e-43 179.5 243 48.6
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.8e-43 179.1 231 46.3
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.1e-42 177.6 250 49.2
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.4e-42 177.2 237 50.2
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.5e-42 176.4 231 48.9
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 1.6e-41 173.7 234 49.1
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 1.6e-41 173.7 227 51.1
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 6.1e-41 171.8 214 49.5
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 2.3e-40 169.9 223 48.0
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 1.5e-39 167.2 239 49.4
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.3e-39 166.0 257 47.5
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 1.3e-38 164.1 226 49.6
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 4.8e-38 162.2 241 47.7
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 8.2e-38 161.4 234 47.0
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 5.3e-37 158.7 243 41.6
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 5.9e-36 155.2 277 43.0
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.0e-35 154.5 234 43.2
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 3.8e-35 152.5 239 40.2
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 5.0e-35 152.1 234 41.9
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 6.5e-35 151.8 217 47.5
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 8.5e-35 151.4 231 45.0
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 9.4e-34 147.9 241 44.0
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.1e-33 146.7 200 46.0
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 2.7e-33 146.4 259 40.2
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 3.6e-33 146.0 233 46.4
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 6.7e-32 141.7 239 39.7
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 8.8e-32 141.4 223 41.7
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 3.3e-31 139.4 234 41.9
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 3.3e-31 139.4 221 41.2
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 5.7e-31 138.7 235 44.3
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 9.7e-31 137.9 230 43.9
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 9.7e-31 137.9 204 47.1
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 2.2e-30 136.7 226 44.2
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 2.2e-30 136.7 226 44.2
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 8.2e-30 134.8 229 41.5
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 3.1e-29 132.9 230 40.4
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 3.1e-29 132.9 230 40.4
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 3.1e-29 132.9 225 40.9
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 4.1e-29 132.5 230 40.4
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 7.0e-29 131.7 225 42.7
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 7.0e-29 131.7 225 42.7
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 7.0e-29 131.7 225 42.7
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 2.0e-28 130.2 241 41.5
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 3.5e-28 129.4 232 38.8
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 4.5e-28 129.0 236 40.7
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 1.7e-27 127.1 262 41.2
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 2.9e-27 126.3 258 39.5
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 3.8e-27 125.9 232 38.4
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 8.5e-27 124.8 239 41.8
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.5e-26 124.0 236 38.1
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 2.5e-26 123.2 231 43.3
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 3.2e-26 122.9 238 40.3
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 9.4e-26 121.3 232 37.5
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 8.0e-25 118.2 204 41.2
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 2.3e-24 116.7 207 39.6
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 4.0e-24 115.9 222 39.6
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 4.0e-24 115.9 222 39.6
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 1.5e-23 114.0 226 37.2
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 7.5e-23 111.7 157 43.3
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 3.7e-22 109.4 216 38.0
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 6.3e-22 108.6 233 37.3
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 6.3e-22 108.6 202 39.6
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 1.8e-21 107.1 201 39.3
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 3.1e-21 106.3 212 38.7
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 5.3e-21 105.5 228 36.4
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 5.3e-21 105.5 220 35.0
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.2e-20 104.4 236 37.7
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.3e-19 100.9 232 34.9
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 1.3e-19 100.9 296 31.1
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 2.2e-19 100.1 201 35.8
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 2.9e-19 99.8 295 30.8
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.1e-18 97.8 298 30.5
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 5.5e-18 95.5 252 32.9
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 9.4e-18 94.7 197 34.0
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 1.2e-17 94.4 140 45.0
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 2.6e-15 86.7 186 35.5
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 4.4e-15 85.9 147 42.2
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.4e-13 80.9 102 45.1
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 1.8e-13 80.5 87 52.9
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 4.5e-12 75.9 227 30.4
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 2.9e-11 73.2 203 34.5
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 2.5e-10 70.1 86 51.2
AUR62007299 Chenopodium quinoa HOM05D004742 ORTHO05D005677 3.2e-10 69.7 134 43.3
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 5.5e-10 68.9 160 36.2
CSS0009789 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.4e-07 59.7 99 39.4
Zm00001eb072350 Zea mays HOM05D004742 ORTHO05D005677 9.8e-07 58.2 87 43.7
CDE02G3549 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 8.3e-06 55.1 211 27.5


User provided reference genes

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