Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10174 Trifolium pratense HOM05D001739 ORTHO05D004575 3.5e-138 495.0 256 100.0
TPR.G10190 Trifolium pratense HOM05D001739 ORTHO05D004575 7.0e-78 294.7 204 77.0
Ca_09790_v3 Cicer arietinum L. HOM05D001739 ORTHO05D004575 3.7e-71 272.3 250 60.0
Lj4g0016027 Lotus japonicus HOM05D001739 ORTHO05D004575 3.3e-67 259.2 251 58.6
TPR.G18558 Trifolium pratense HOM05D001739 ORTHO05D004575 3.1e-65 252.7 242 58.7
Medtr1g072890 Medicago truncatula HOM05D001739 ORTHO05D004575 7.5e-64 248.1 253 58.9
Lalb_Chr12g0200311 Lupinus albus HOM05D001739 ORTHO05D004575 2.1e-61 240.0 250 53.6
Medtr1g072970 Medicago truncatula HOM05D001739 ORTHO05D004575 2.7e-61 239.6 262 55.3
Psat6g134600 Pisum sativum HOM05D001739 ORTHO05D004575 5.6e-59 231.9 260 53.8
Lalb_Chr13g0299281 Lupinus albus HOM05D001739 ORTHO05D004575 3.6e-58 229.2 250 52.0
Glyma.13G112900 Glycine max HOM05D001739 ORTHO05D004575 1.2e-53 214.2 253 49.4
arahy.Tifrunner.gnm1.ann1.SDZ4E8 Arachis hypogaea HOM05D001739 ORTHO05D004575 2.1e-53 213.4 242 53.7
Phvul.003G128600 Phaseolus vulgaris HOM05D001739 ORTHO05D004575 2.1e-53 213.4 253 48.6
Glyma.17G046900 Glycine max HOM05D001739 ORTHO05D004575 7.8e-53 211.5 255 49.0
Psat7g002920 Pisum sativum HOM05D001739 ORTHO05D004575 1.0e-52 211.1 240 51.2
arahy.Tifrunner.gnm1.ann1.9HZQ4R Arachis hypogaea HOM05D001739 ORTHO05D004575 1.7e-52 210.3 241 53.1
VMungo1215G0229 Vigna mungo HOM05D001739 ORTHO05D004575 6.6e-52 208.4 253 47.8
Cfa002954 Carpinus fangiana HOM05D001739 ORTHO05D004575 2.5e-51 206.5 243 46.9
Haze_26051 Corylus avellana HOM05D001739 ORTHO05D004575 3.3e-51 206.1 243 46.5
MD15G1221900 Malus domestica HOM05D001739 ORTHO05D004575 3.3e-51 206.1 241 47.7
TAR383G0739 Trochodendron aralioides HOM05D001739 ORTHO05D004575 3.3e-51 206.1 240 44.2
Prupe.7G193800 Prunus persica HOM05D001739 ORTHO05D004575 4.3e-51 205.7 242 47.9
Prupe.6G204500 Prunus persica HOM05D001739 ORTHO05D004575 1.2e-50 204.1 241 49.0
arahy.Tifrunner.gnm1.ann1.7457H2 Arachis hypogaea HOM05D001739 ORTHO05D004575 2.1e-50 203.4 242 51.2
CiPaw.03G202600 Carya illinoinensis HOM05D001739 ORTHO05D004575 2.1e-50 203.4 245 45.7
ClCG03G014800 Citrullus lanatus HOM05D001739 ORTHO05D004575 2.1e-50 203.4 244 45.5
MELO3C015548.2 Cucumis melo HOM05D001739 ORTHO05D004575 1.8e-49 200.3 243 45.3
CsaV3_1G041350 Cucumis sativus L. HOM05D001739 ORTHO05D004575 1.8e-49 200.3 243 45.3
arahy.Tifrunner.gnm1.ann1.WW7XLJ Arachis hypogaea HOM05D001739 ORTHO05D004575 6.9e-49 198.4 242 50.0
Hma1.2p1_0169F.1_g074380 Hydrangea macrophylla HOM05D001739 ORTHO05D004575 9.0e-49 198.0 240 45.8
QL11p002157 Quercus lobata HOM05D001739 ORTHO05D004575 2.0e-48 196.8 252 44.8
Lj7C690T11 Lonicera japonica HOM05D001739 ORTHO05D004575 2.6e-48 196.4 254 44.9
Atru.chr7.1752 Acer truncatum HOM05D001739 ORTHO05D004575 3.4e-48 196.1 242 44.2
Nn8g40294 Nelumbo nucifera HOM05D001739 ORTHO05D004575 4.4e-48 195.7 251 45.4
Rhsim05G0003800 Rhododendron simsii HOM05D001739 ORTHO05D004575 5.8e-48 195.3 249 44.2
Sabra18G0055900 Salix brachista HOM05D001739 ORTHO05D004575 4.9e-47 192.2 245 43.7
vmacro17095 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 1.1e-46 191.0 240 41.7
vmacro23084 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 1.1e-46 191.0 240 41.7
Dinv25520 Davidia involucrata HOM05D001739 ORTHO05D004575 1.4e-46 190.7 240 42.9
Duzib168G0208 Durio zibethinus HOM05D001739 ORTHO05D004575 1.9e-46 190.3 239 43.1
Lsat_1_v5_gn_7_35381 Lactuca sativa HOM05D001739 ORTHO05D004575 4.2e-46 189.1 244 42.6
Sed0021617 Sechium edule HOM05D001739 ORTHO05D004575 5.4e-46 188.7 239 44.8
Potri.006G137900 Populus trichocarpa HOM05D001739 ORTHO05D004575 9.3e-46 188.0 248 44.8
Ciclev10023308m.g Citrus clementina HOM05D001739 ORTHO05D004575 2.7e-45 186.4 242 44.2
Manes.16G091500 Manihot esculenta HOM05D001739 ORTHO05D004575 7.8e-45 184.9 251 41.4
Cpa.g.sc32.6 Carica papaya HOM05D001739 ORTHO05D004575 1.0e-44 184.5 247 41.7
COL.COLO4_21223 Corchorus olitorius HOM05D001739 ORTHO05D004575 1.0e-44 184.5 239 43.9
vmacro17113 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 1.0e-44 184.5 243 39.9
Gohir.D07G016300 Gossypium hirsutum HOM05D001739 ORTHO05D004575 2.3e-44 183.3 239 43.1
Gorai.001G017100 Gossypium raimondii HOM05D001739 ORTHO05D004575 3.0e-44 183.0 239 42.7
Thecc.09G071800 Theobroma cacao HOM05D001739 ORTHO05D004575 3.0e-44 183.0 239 43.1
Gohir.A07G016500 Gossypium hirsutum HOM05D001739 ORTHO05D004575 3.9e-44 182.6 239 43.1
DCAR_005064 Daucus carota HOM05D001739 ORTHO05D004575 1.1e-43 181.0 251 42.6
TWI32G0648 Tripterygium wilfordii HOM05D001739 ORTHO05D004575 1.1e-43 181.0 241 41.5
Sed0004150 Sechium edule HOM05D001739 ORTHO05D004575 1.3e-42 177.6 242 42.1
MD02G1099100 Malus domestica HOM05D001739 ORTHO05D004575 1.6e-42 177.2 219 45.7
CANSAT56G3462 Cannabis sativa HOM05D001739 ORTHO05D004575 4.8e-42 175.6 239 42.3
MSTRG.5982 Avicennia marina HOM05D001739 ORTHO05D004575 6.2e-42 175.3 253 41.1
SGA_v2.0_scaffold281G46906 Striga asiatica HOM05D001739 ORTHO05D004575 5.3e-41 172.2 246 41.5
CSS0017458 Camellia sinensis var. sinensis HOM05D001739 ORTHO05D004575 9.0e-41 171.4 240 41.2
Nitab4.5_0007773g0020 Nicotiana tabacum HOM05D001739 ORTHO05D004575 9.0e-41 171.4 246 40.2
PGR142G3865 Punica granatum HOM05D001739 ORTHO05D004575 9.0e-41 171.4 239 41.0
Aqoxy7G03292 Aquilegia oxysepala HOM05D001739 ORTHO05D004575 7.6e-40 168.3 250 39.6
Sopen07g021980 Solanum pennellii HOM05D001739 ORTHO05D004575 1.3e-39 167.5 255 41.2
HanXRQChr09g0273551 Helianthus annuus HOM05D001739 ORTHO05D004575 6.4e-39 165.2 246 39.8
CAN.G63.12 Capsicum annuum HOM05D001739 ORTHO05D004575 1.9e-38 163.7 255 39.2
Cc06_g12580 Coffea canephora HOM05D001739 ORTHO05D004575 1.9e-38 163.7 244 40.2
TPR.G34376 Trifolium pratense HOM05D001739 ORTHO05D004575 5.4e-38 162.2 104 79.8
RcHm_v2.0_Chr2g0095731 Rosa chinensis HOM05D001739 ORTHO05D004575 9.3e-38 161.4 249 39.0
SHI02768 Sapria himalayana HOM05D001739 ORTHO05D004575 2.7e-37 159.8 243 39.9
HanXRQChr04g0122371 Helianthus annuus HOM05D001739 ORTHO05D004575 1.3e-36 157.5 257 39.7
FAN26G0091 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.8e-36 157.1 251 37.8
Sc24g0001530 Simmondsia chinensis HOM05D001739 ORTHO05D004575 3.0e-36 156.4 239 37.2
FAN26G1120 Fragaria x ananassa HOM05D001739 ORTHO05D004575 5.1e-36 155.6 248 37.9
TPR.G13945 Trifolium pratense HOM05D001739 ORTHO05D004575 6.7e-36 155.2 238 39.9
FAN23G1590 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.5e-35 154.1 249 37.8
FvH4_1g09210 Fragaria vesca HOM05D001739 ORTHO05D004575 3.3e-35 152.9 249 37.8
ECA240G3214 Erigeron canadensis HOM05D001739 ORTHO05D004575 5.6e-35 152.1 246 37.4
FAN19G0975 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.3e-34 151.0 249 36.9
GSVIVG01023097001 Vitis vinifera HOM05D001739 ORTHO05D004575 1.6e-34 150.6 212 42.0
EL10Ac8g19018 Beta vulgaris HOM05D001739 ORTHO05D004575 6.2e-34 148.7 252 36.1
Hund23253 Selenicereus undatus HOM05D001739 ORTHO05D004575 6.2e-34 148.7 251 36.3
AUR62039592 Chenopodium quinoa HOM05D001739 ORTHO05D004575 8.1e-34 148.3 252 36.1
Nitab4.5_0001565g0110 Nicotiana tabacum HOM05D001739 ORTHO05D004575 1.1e-33 147.9 297 33.7
Ah.09g229240 Amaranthus hybridus HOM05D001739 ORTHO05D004575 1.8e-33 147.1 256 37.1
AUR62019633 Chenopodium quinoa HOM05D001739 ORTHO05D004575 3.1e-33 146.4 242 36.4
Prupe.7G186700 Prunus persica HOM05D001739 ORTHO05D004575 2.6e-32 143.3 247 38.1
CDE12G0121 Ceratophyllum demersum HOM05D001739 ORTHO05D004575 3.4e-32 142.9 255 36.5
PSO104G0064 Papaver somniferum HOM05D001739 ORTHO05D004575 3.4e-32 142.9 257 37.4
PSO421G0331 Papaver somniferum HOM05D001739 ORTHO05D004575 1.9e-30 137.1 256 36.3
AUR62028280 Chenopodium quinoa HOM05D001739 ORTHO05D004575 4.2e-30 136.0 246 34.1
DCAR_003861 Daucus carota HOM05D001739 ORTHO05D004575 5.5e-30 135.6 169 45.0
FAN28G0236 Fragaria x ananassa HOM05D001739 ORTHO05D004575 7.1e-30 135.2 277 33.2
THA.LOC104809049 Tarenaya hassleriana HOM05D001739 ORTHO05D004575 9.3e-30 134.8 241 35.3
unitig_744.g24652 Utricularia gibba HOM05D001739 ORTHO05D004575 9.3e-30 134.8 241 34.4
HPP92_004359 Vanilla planifolia HOM05D001739 ORTHO05D004575 1.4e-25 120.9 260 34.2
Pp3c2_3190 Physcomitrium patens HOM05D001739 ORTHO05D004575 4.0e-25 119.4 247 31.2
SEGI_37036 Sequoiadendron giganteum HOM05D001739 ORTHO05D004575 6.9e-25 118.6 253 33.2
BcaB01g03896 Brassica carinata HOM05D001739 ORTHO05D004575 1.5e-24 117.5 253 33.2
Sp4g16630 Schrenkiella parvula HOM05D001739 ORTHO05D004575 2.0e-24 117.1 241 33.2
Solyc07g042380.4 Solanum lycopersicum HOM05D001739 ORTHO05D004575 5.8e-24 115.5 251 33.1
Os02g0782100 Oryza sativa ssp. japonica HOM05D001739 ORTHO05D004575 1.3e-23 114.4 137 46.0
Aa31LG9G14080 Aethionema arabicum HOM05D001739 ORTHO05D004575 6.5e-23 112.1 240 32.5
AL4G30320 Arabidopsis lyrata HOM05D001739 ORTHO05D004575 1.1e-22 111.3 244 31.1
AT2G34357 Arabidopsis thaliana HOM05D001739 ORTHO05D004575 3.2e-22 109.8 240 30.8
Peaxi162Scf00191g01112 Petunia axillaris HOM05D001739 ORTHO05D004575 3.2e-22 109.8 242 31.8
ATR0681G226 Amborella trichopoda HOM05D001739 ORTHO05D004575 7.1e-22 108.6 220 33.6
BcaB02g09558 Brassica carinata HOM05D001739 ORTHO05D004575 3.5e-21 106.3 240 31.2
FvH4_1g13610 Fragaria vesca HOM05D001739 ORTHO05D004575 3.5e-21 106.3 245 34.3
FvH4_1g13570 Fragaria vesca HOM05D001739 ORTHO05D004575 6.0e-21 105.5 246 34.1
FAN19G0770 Fragaria x ananassa HOM05D001739 ORTHO05D004575 6.0e-21 105.5 245 34.3
BolC3t14614H Brassica oleracea HOM05D001739 ORTHO05D004575 1.0e-20 104.8 240 32.5
BraA03t11167Z Brassica rapa HOM05D001739 ORTHO05D004575 1.8e-20 104.0 240 32.5
A03p19100 Brassica napus HOM05D001739 ORTHO05D004575 3.0e-20 103.2 240 32.1
Zm00001eb257110 Zea mays HOM05D001739 ORTHO05D004575 3.9e-20 102.8 211 29.4
Thhalv10016153m.g Eutrema salsugineum HOM05D001739 ORTHO05D004575 6.7e-20 102.1 250 32.0
BcaC01g05798 Brassica carinata HOM05D001739 ORTHO05D004575 1.1e-19 101.3 241 32.0
C03p22320 Brassica napus HOM05D001739 ORTHO05D004575 1.1e-19 101.3 241 32.0
AagrBONN_evm.TU.Sc2ySwM_117.3958 Anthoceros agrestis HOM05D001739 ORTHO05D004575 2.5e-19 100.1 255 29.8
Carub.0004s1602 Capsella rubella HOM05D001739 ORTHO05D004575 2.5e-19 100.1 240 29.6
C04p14660 Brassica napus HOM05D001739 ORTHO05D004575 4.3e-19 99.4 239 31.4
BolC4t23047H Brassica oleracea HOM05D001739 ORTHO05D004575 4.3e-19 99.4 239 31.4
BraA05t20081Z Brassica rapa HOM05D001739 ORTHO05D004575 7.4e-19 98.6 240 32.1
CARHR128440 Cardamine hirsuta HOM05D001739 ORTHO05D004575 1.3e-18 97.8 240 29.6
A05p11320 Brassica napus HOM05D001739 ORTHO05D004575 6.3e-18 95.5 240 31.7
CAN.G333.15 Capsicum annuum HOM05D001739 ORTHO05D004575 8.2e-18 95.1 88 55.7
BcaC02g11500 Brassica carinata HOM05D001739 ORTHO05D004575 1.4e-17 94.4 239 31.0
Mapoly0061s0020 Marchantia polymorpha HOM05D001739 ORTHO05D004575 4.5e-16 89.4 254 29.5
SEGI_16086 Sequoiadendron giganteum HOM05D001739 ORTHO05D004575 4.5e-16 89.4 250 26.8
SMO361G0459 Selaginella moellendorffii HOM05D001739 ORTHO05D004575 2.9e-15 86.7 243 29.2
BcaC02g11606 Brassica carinata HOM05D001739 ORTHO05D004575 3.8e-15 86.3 242 28.1
C04p13350 Brassica napus HOM05D001739 ORTHO05D004575 3.8e-15 86.3 242 28.1
MD02G1098900 Malus domestica HOM05D001739 ORTHO05D004575 5.5e-14 82.4 70 55.7
FAN26G0455 Fragaria x ananassa HOM05D001739 ORTHO05D004575 2.1e-13 80.5 226 31.4
DCAR_009063 Daucus carota HOM05D001739 ORTHO05D006605 3.6e-13 79.7 255 27.5
THA.LOC104804954 Tarenaya hassleriana HOM05D001739 ORTHO05D006605 3.0e-12 76.6 256 26.6
THA.LOC104806422 Tarenaya hassleriana HOM05D001739 ORTHO05D006605 3.0e-12 76.6 256 26.6
Migut.J01753 Erythranthe guttata HOM05D001739 ORTHO05D006605 5.1e-12 75.9 259 27.0
CDE04G0230 Ceratophyllum demersum HOM05D001739 ORTHO05D004575 6.7e-12 75.5 87 46.0
Sopen04g007950 Solanum pennellii HOM05D001739 ORTHO05D006605 1.1e-11 74.7 246 28.5
Solyc04g015940.3 Solanum lycopersicum HOM05D001739 ORTHO05D006605 2.0e-11 73.9 257 27.6
Oeu033011.1 Olea europaea HOM05D001739 ORTHO05D006605 2.5e-11 73.6 253 26.5
Nn7g36309 Nelumbo nucifera HOM05D001739 ORTHO05D006605 9.7e-11 71.6 271 26.9
Cc06_g17610 Coffea canephora HOM05D001739 ORTHO05D006605 1.3e-10 71.2 253 26.9
Atru.chr1.1111 Acer truncatum HOM05D001739 ORTHO05D006605 2.8e-10 70.1 248 25.4
Cre19.g751197 Chlamydomonas reinhardtii HOM05D001739 ORTHO05D004575 2.8e-10 70.1 243 26.3
AUR62025277 Chenopodium quinoa HOM05D001739 ORTHO05D004575 6.3e-10 68.9 137 32.8
Ciclev10006456m.g Citrus clementina HOM05D001739 ORTHO05D006605 6.3e-10 68.9 255 26.7
Migut.J00896 Erythranthe guttata HOM05D001739 ORTHO05D004575 8.2e-10 68.6 136 30.1
FvH4_5g06040 Fragaria vesca HOM05D001739 ORTHO05D029422 8.2e-10 68.6 251 25.1
Nitab4.5_0000586g0090 Nicotiana tabacum HOM05D001739 ORTHO05D006605 1.1e-09 68.2 248 27.8
SalBow6G2278 Salvia bowleyana HOM05D001739 ORTHO05D006605 1.1e-09 68.2 251 25.1
Hma1.2p1_1041F.1_g250970 Hydrangea macrophylla HOM05D001739 ORTHO05D006605 1.4e-09 67.8 248 26.6
EL10Ac3g07096 Beta vulgaris HOM05D001739 ORTHO05D006605 1.8e-09 67.4 252 27.0
FAN19G0960 Fragaria x ananassa HOM05D001739 ORTHO05D025407 1.8e-09 67.4 242 28.1
Potri.006G050000 Populus trichocarpa HOM05D001739 ORTHO05D006605 1.8e-09 67.4 254 24.8
MSTRG.19857 Avicennia marina HOM05D001739 ORTHO05D006605 2.4e-09 67.0 258 28.7
CANSAT80G2527 Cannabis sativa HOM05D001739 ORTHO05D006605 3.1e-09 66.6 274 24.5
FvH4_1g08660 Fragaria vesca HOM05D001739 ORTHO05D025407 3.1e-09 66.6 242 27.7
CSS0037723 Camellia sinensis var. sinensis HOM05D001739 ORTHO05D006605 4.1e-09 66.2 248 25.8
Manes.09G020800 Manihot esculenta HOM05D001739 ORTHO05D006605 4.1e-09 66.2 255 23.5
TAR623G1060 Trochodendron aralioides HOM05D001739 ORTHO05D006605 9.1e-09 65.1 265 25.7
SGA_v2.0_scaffold105G30404 Striga asiatica HOM05D001739 ORTHO05D006605 1.2e-08 64.7 254 28.0
FvH4_5g05990 Fragaria vesca HOM05D001739 ORTHO05D029422 1.5e-08 64.3 251 24.7
RcHm_v2.0_Chr2g0095131 Rosa chinensis HOM05D001739 ORTHO05D015654 1.5e-08 64.3 240 27.9
EL10Ac8g19019 Beta vulgaris HOM05D001739 ORTHO05D010736 2.6e-08 63.5 165 28.5
FAN23G1058 Fragaria x ananassa HOM05D001739 ORTHO05D025407 2.6e-08 63.5 242 27.3
Nitab4.5_0009615g0010 Nicotiana tabacum HOM05D001739 ORTHO05D006605 3.4e-08 63.2 248 27.0
Actinidia09324 Actinidia chinensis HOM05D001739 ORTHO05D006605 4.5e-08 62.8 240 27.1
FvH4_6g18960 Fragaria vesca HOM05D001739 ORTHO05D035276 7.7e-08 62.0 164 31.1
Sed0004072 Sechium edule HOM05D001739 ORTHO05D006605 7.7e-08 62.0 253 25.3
FAN18G1935 Fragaria x ananassa HOM05D001739 ORTHO05D029422 1.3e-07 61.2 173 28.3
Lju124C42G12 Lonicera japonica HOM05D001739 ORTHO05D006605 1.3e-07 61.2 259 24.3
Sc13g0001700 Simmondsia chinensis HOM05D001739 ORTHO05D006605 1.3e-07 61.2 245 24.1
Lsat_1_v5_gn_9_30560 Lactuca sativa HOM05D001739 ORTHO05D006605 1.7e-07 60.8 255 24.3
GSVIVG01033265001 Vitis vinifera HOM05D001739 ORTHO05D006605 1.7e-07 60.8 238 26.5
ECA247G0166 Erigeron canadensis HOM05D001739 ORTHO05D006605 2.2e-07 60.5 248 26.2
Hund24703 Selenicereus undatus HOM05D001739 ORTHO05D006605 2.9e-07 60.1 250 26.8
Sabra06G0034900 Salix brachista HOM05D001739 ORTHO05D006605 3.8e-07 59.7 241 25.7
VMungo0464G0523 Vigna mungo HOM05D001739 ORTHO05D434974 1.9e-06 57.4 40 67.5
CAN.G676.32 Capsicum annuum HOM05D001739 ORTHO05D006605 4.2e-06 56.2 224 25.0
MELO3C009801.2 Cucumis melo HOM05D001739 ORTHO05D006605 4.2e-06 56.2 247 23.9
HanXRQChr10g0296671 Helianthus annuus HOM05D001739 ORTHO05D006605 5.5e-06 55.8 242 25.6
TWI74G0913 Tripterygium wilfordii HOM05D001739 ORTHO05D006605 5.5e-06 55.8 257 24.1


User provided reference genes

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