Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10101 Trifolium pratense HOM05D002401 ORTHO05D006143 1.9e-59 232.3 115 100.0
TPR.G12442 Trifolium pratense HOM05D002401 ORTHO05D006143 1.1e-46 189.9 114 85.1
Psat5g144200 Pisum sativum HOM05D002401 ORTHO05D006143 9.6e-35 150.2 114 70.2
Psat0s2724g0080 Pisum sativum HOM05D002401 ORTHO05D006143 2.1e-34 149.1 114 70.2
Medtr3g111580 Medicago truncatula HOM05D002401 ORTHO05D006143 4.5e-32 141.4 115 70.4
TPR.G21549 Trifolium pratense HOM05D002401 ORTHO05D006143 1.0e-31 140.2 115 67.0
Ca_15531_v3 Cicer arietinum L. HOM05D002401 ORTHO05D006143 3.9e-28 128.3 114 60.5
arahy.Tifrunner.gnm1.ann1.LC5CIX Arachis hypogaea HOM05D002401 ORTHO05D006143 6.7e-20 100.9 104 53.8
Glyma.04G034800 Glycine max HOM05D002401 ORTHO05D006143 8.7e-20 100.5 115 48.7
arahy.Tifrunner.gnm1.ann1.JWFJ3V Arachis hypogaea HOM05D002401 ORTHO05D006143 4.3e-19 98.2 99 54.5
arahy.Tifrunner.gnm1.ann1.A6BGRK Arachis hypogaea HOM05D002401 ORTHO05D006143 9.7e-19 97.1 99 51.5
arahy.Tifrunner.gnm1.ann1.PMC9AK Arachis hypogaea HOM05D002401 ORTHO05D006143 2.8e-18 95.5 99 53.5
Lj1g0004451 Lotus japonicus HOM05D002401 ORTHO05D006143 2.8e-18 95.5 101 52.5
VMungo0540G1795 Vigna mungo HOM05D002401 ORTHO05D006143 4.8e-18 94.7 104 51.0
Lalb_Chr02g0157531 Lupinus albus HOM05D002401 ORTHO05D006143 1.4e-17 93.2 107 51.4
Glyma.18G099900 Glycine max HOM05D002401 ORTHO05D006143 1.8e-17 92.8 127 47.2
Phvul.006G040300 Phaseolus vulgaris HOM05D002401 ORTHO05D006143 1.8e-17 92.8 104 50.0
Phvul.005G120000 Phaseolus vulgaris HOM05D002401 ORTHO05D006143 1.5e-16 89.7 127 44.1
Gorai.009G206100 Gossypium raimondii HOM05D002401 ORTHO05D006143 6.1e-13 77.8 64 57.8
Gohir.A05G197900 Gossypium hirsutum HOM05D002401 ORTHO05D006143 1.4e-12 76.6 64 56.2
Gohir.D05G200800 Gossypium hirsutum HOM05D002401 ORTHO05D006143 1.4e-12 76.6 64 56.2
CARHR037210 Cardamine hirsuta HOM05D002401 ORTHO05D006143 6.7e-12 74.3 73 46.6
Cc07_g16250 Coffea canephora HOM05D002401 ORTHO05D006143 6.7e-12 74.3 118 41.5
TAR376G0282 Trochodendron aralioides HOM05D002401 ORTHO05D006143 6.7e-12 74.3 64 51.6
Nn7g38029 Nelumbo nucifera HOM05D002401 ORTHO05D006143 8.8e-12 73.9 113 39.8
THA.LOC104803396 Tarenaya hassleriana HOM05D002401 ORTHO05D006143 8.8e-12 73.9 95 43.2
Hund09910 Selenicereus undatus HOM05D002401 ORTHO05D006143 1.5e-11 73.2 64 51.6
Aa31LG2G19270 Aethionema arabicum HOM05D002401 ORTHO05D006143 2.0e-11 72.8 96 42.7
AT1G47578 Arabidopsis thaliana HOM05D002401 ORTHO05D006143 2.5e-11 72.4 92 41.3
CANSAT56G2411 Cannabis sativa HOM05D002401 ORTHO05D006143 2.5e-11 72.4 75 42.7
Sabra02G0103000 Salix brachista HOM05D002401 ORTHO05D006143 2.5e-11 72.4 103 36.9
AUR62008526 Chenopodium quinoa HOM05D002401 ORTHO05D006143 3.3e-11 72.0 64 53.1
Sc02g0006690 Simmondsia chinensis HOM05D002401 ORTHO05D006143 3.3e-11 72.0 62 54.8
CAN.G371.115 Capsicum annuum HOM05D002401 ORTHO05D006143 4.3e-11 71.6 75 48.0
PGR031G0661 Punica granatum HOM05D002401 ORTHO05D006143 4.3e-11 71.6 98 40.8
QL04p005176 Quercus lobata HOM05D002401 ORTHO05D006143 4.3e-11 71.6 96 38.5
Atru.chr13.576 Acer truncatum HOM05D002401 ORTHO05D006143 5.7e-11 71.2 72 43.1
Cfa020647 Carpinus fangiana HOM05D002401 ORTHO05D006143 5.7e-11 71.2 115 38.3
COL.COLO4_26393 Corchorus olitorius HOM05D002401 ORTHO05D006143 5.7e-11 71.2 62 54.8
GSVIVG01011051001 Vitis vinifera HOM05D002401 ORTHO05D006143 7.4e-11 70.9 64 51.6
Eucgr.H02545 Eucalyptus grandis HOM05D002401 ORTHO05D006143 9.7e-11 70.5 65 47.7
PGSC0003DMG400016886 Solanum tuberosum HOM05D002401 ORTHO05D006143 9.7e-11 70.5 68 50.0
Thecc.08G019900 Theobroma cacao HOM05D002401 ORTHO05D006143 9.7e-11 70.5 64 50.0
EL10Ac5g11128 Beta vulgaris HOM05D002401 ORTHO05D006143 1.3e-10 70.1 64 48.4
Ah.11g047790 Amaranthus hybridus HOM05D000501 ORTHO05D006143 1.7e-10 69.7 64 53.1
AUR62031756 Chenopodium quinoa HOM05D002401 ORTHO05D006143 1.7e-10 69.7 62 53.2
Duzib041G0147 Durio zibethinus HOM05D002401 ORTHO05D006143 1.7e-10 69.7 62 51.6
Carub.0001s3634 Capsella rubella HOM05D002401 ORTHO05D006143 2.2e-10 69.3 75 42.7
CiPaw.16G052500 Carya illinoinensis HOM05D002401 ORTHO05D006143 2.2e-10 69.3 64 50.0
Hma1.2p1_0260F.1_g104390 Hydrangea macrophylla HOM05D002401 ORTHO05D006143 2.2e-10 69.3 64 50.0
Oeu019097.1 Olea europaea HOM05D002401 ORTHO05D006143 2.2e-10 69.3 64 53.1
TAR628G1629 Trochodendron aralioides HOM05D002401 ORTHO05D006143 2.2e-10 69.3 64 46.9
SGA_v2.0_scaffold14G07044 Striga asiatica HOM05D002401 ORTHO05D006143 2.8e-10 68.9 99 44.4
TWI56G0576 Tripterygium wilfordii HOM05D002401 ORTHO05D006143 2.8e-10 68.9 107 35.5
Ciclev10002047m.g Citrus clementina HOM05D002401 ORTHO05D006143 3.7e-10 68.6 64 48.4
QL02p010939 Quercus lobata HOM05D002401 ORTHO05D006143 3.7e-10 68.6 96 38.5
Sopen04g033330 Solanum pennellii HOM05D002401 ORTHO05D006143 3.7e-10 68.6 67 49.3
BcaC09g51892 Brassica carinata HOM05D002401 ORTHO05D006143 4.8e-10 68.2 96 36.5
CsaV3_5G035090 Cucumis sativus L. HOM05D002401 ORTHO05D006143 4.8e-10 68.2 64 53.1
ECA232G3633 Erigeron canadensis HOM05D002401 ORTHO05D006143 4.8e-10 68.2 65 49.2
DCAR_019427 Daucus carota HOM05D002401 ORTHO05D006143 8.2e-10 67.4 63 46.0
CARHR238960 Cardamine hirsuta HOM05D002401 ORTHO05D006143 1.1e-09 67.0 96 36.5
AL7G21020 Arabidopsis lyrata HOM05D002401 ORTHO05D006143 1.4e-09 66.6 97 39.2
Carub.0007s0947 Capsella rubella HOM05D002401 ORTHO05D006143 1.4e-09 66.6 82 40.2
AUR62021564 Chenopodium quinoa HOM05D002401 ORTHO05D006143 1.4e-09 66.6 62 54.8
MELO3C012322.2 Cucumis melo HOM05D002401 ORTHO05D006143 1.4e-09 66.6 64 51.6
Dinv29831 Davidia involucrata HOM05D002401 ORTHO05D006143 1.4e-09 66.6 64 50.0
Manes.05G166100 Manihot esculenta HOM05D002401 ORTHO05D006143 1.4e-09 66.6 125 34.4
Aqoxy6G00960 Aquilegia oxysepala HOM05D002401 ORTHO05D006143 1.8e-09 66.2 72 41.7
C01p07880 Brassica napus HOM05D002401 ORTHO05D006143 1.8e-09 66.2 96 35.4
BolC1t00775H Brassica oleracea HOM05D002401 ORTHO05D006143 1.8e-09 66.2 96 35.4
Migut.N02680 Erythranthe guttata HOM05D002401 ORTHO05D006143 1.8e-09 66.2 64 50.0
FvH4_2g26090 Fragaria vesca HOM05D002401 ORTHO05D006143 1.8e-09 66.2 79 40.5
FAN15G1231 Fragaria x ananassa HOM05D002401 ORTHO05D006143 1.8e-09 66.2 79 41.8
FAN24G0239 Fragaria x ananassa HOM05D002401 ORTHO05D006143 1.8e-09 66.2 79 40.5
SHI04962 Sapria himalayana HOM05D002401 ORTHO05D006143 1.8e-09 66.2 62 50.0
Sp7g28930 Schrenkiella parvula HOM05D002401 ORTHO05D006143 1.8e-09 66.2 97 39.2
Rhsim06G0039300 Rhododendron simsii HOM05D002401 ORTHO05D006143 2.4e-09 65.9 64 50.0
RcHm_v2.0_Chr5g0074221 Rosa chinensis HOM05D002401 ORTHO05D006143 2.4e-09 65.9 62 48.4
AL1G53870 Arabidopsis lyrata HOM05D002401 ORTHO05D006143 3.1e-09 65.5 73 41.1
Thhalv10025943m.g Eutrema salsugineum HOM05D002401 ORTHO05D006143 3.1e-09 65.5 64 46.9
FAN20G2779 Fragaria x ananassa HOM05D002401 ORTHO05D006143 3.1e-09 65.5 79 40.5
FAN27G1995 Fragaria x ananassa HOM05D002401 ORTHO05D006143 3.1e-09 65.5 79 40.5
Potri.002G131000 Populus trichocarpa HOM05D002401 ORTHO05D006143 3.1e-09 65.5 98 34.7
RcHm_v2.0_Chr6g0294461 Rosa chinensis HOM05D002401 ORTHO05D006143 3.1e-09 65.5 62 48.4
A01p07120 Brassica napus HOM05D002401 ORTHO05D006143 4.1e-09 65.1 64 46.9
BraA01t00664Z Brassica rapa HOM05D002401 ORTHO05D006143 4.1e-09 65.1 64 46.9
AT4G31050 Arabidopsis thaliana HOM05D002401 ORTHO05D006143 5.3e-09 64.7 97 38.1
ClCG05G022050 Citrullus lanatus HOM05D002667 ORTHO05D006143 5.3e-09 64.7 67 49.3
CDE09G0871 Ceratophyllum demersum HOM05D002401 ORTHO05D006143 6.9e-09 64.3 64 45.3
HanXRQChr09g0268371 Helianthus annuus HOM05D002401 ORTHO05D006143 6.9e-09 64.3 66 42.4
Prupe.5G012900 Prunus persica HOM05D002401 ORTHO05D006143 9.1e-09 63.9 62 48.4
Rhsim08G0075100 Rhododendron simsii HOM05D002401 ORTHO05D006143 9.1e-09 63.9 64 50.0
Sp1g34610 Schrenkiella parvula HOM05D002401 ORTHO05D006143 1.2e-08 63.5 64 43.8
MSTRG.24312 Avicennia marina HOM05D002401 ORTHO05D006143 1.5e-08 63.2 64 50.0
Sed0016228 Sechium edule HOM05D002401 ORTHO05D006143 1.5e-08 63.2 64 48.4
BcaNung03418 Brassica carinata HOM05D002401 ORTHO05D006143 2.0e-08 62.8 95 35.8
CSS0037792 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D006143 2.0e-08 62.8 64 50.0
CSS0045600 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D006143 2.0e-08 62.8 64 50.0
Lsat_1_v5_gn_4_122901 Lactuca sativa HOM05D002401 ORTHO05D006143 2.0e-08 62.8 100 34.0
Lj1A1064T34 Lonicera japonica HOM05D002401 ORTHO05D006143 2.0e-08 62.8 62 46.8
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 2.0e-08 62.8 67 47.8
A08p18900 Brassica napus HOM05D002401 ORTHO05D006143 2.6e-08 62.4 64 43.8
vmacro21595 Vaccinium macrocarpon HOM05D002401 ORTHO05D006143 2.6e-08 62.4 62 48.4
BcaB03g12674 Brassica carinata HOM05D002401 ORTHO05D006143 3.4e-08 62.0 64 42.2
MD06G1010800 Malus domestica HOM05D002401 ORTHO05D006143 3.4e-08 62.0 102 36.3
vmacro12719 Vaccinium macrocarpon HOM05D002401 ORTHO05D006143 3.4e-08 62.0 62 48.4
SalBow7G0739 Salvia bowleyana HOM05D002401 ORTHO05D006143 4.5e-08 61.6 77 37.7
PSO700G0184 Papaver somniferum HOM05D002401 ORTHO05D006143 5.9e-08 61.2 65 43.1
CiPaw.06G110100 Carya illinoinensis HOM05D002401 ORTHO05D006143 7.7e-08 60.8 114 33.3
Peaxi162Scf00280g00077 Petunia axillaris HOM05D002401 ORTHO05D006143 7.7e-08 60.8 61 47.5
PSO170G5894 Papaver somniferum HOM05D002401 ORTHO05D006143 2.2e-07 59.3 57 47.4
Glyma.08G314300 Glycine max HOM05D002401 ORTHO05D006143 2.9e-07 58.9 42 64.3
Zm00001eb030760 Zea mays HOM05D002401 ORTHO05D006143 2.9e-07 58.9 103 34.0
Os12g0596000 Oryza sativa ssp. japonica HOM05D002401 ORTHO05D006143 3.8e-07 58.5 66 39.4
Dinv29837 Davidia involucrata HOM05D002401 ORTHO05D006143 5.0e-07 58.2 64 43.8
AUR62036501 Chenopodium quinoa HOM05D002857 ORTHO05D007919 6.5e-07 57.8 64 48.4
HanXRQChr05g0141551 Helianthus annuus HOM05D002401 ORTHO05D006143 1.1e-06 57.0 103 35.9
MBI16_g31342_MAGBIO Magnolia biondii HOM05D002401 ORTHO05D006143 1.1e-06 57.0 65 40.0
PSO170G6637 Papaver somniferum HOM05D002401 ORTHO05D006143 1.1e-06 57.0 74 40.5
Nitab4.5_0000110g0070 Nicotiana tabacum HOM05D002401 ORTHO05D006143 1.4e-06 56.6 56 50.0
Nitab4.5_0009288g0040 Nicotiana tabacum HOM05D002401 ORTHO05D006143 1.9e-06 56.2 55 50.9
Pp3c12_18570 Physcomitrium patens HOM05D002401 ORTHO05D006143 1.9e-06 56.2 91 36.3
Oeu015608.1 Olea europaea HOM05D002401 ORTHO05D006143 2.5e-06 55.8 57 45.6
SEGI_06323 Sequoiadendron giganteum HOM05D002401 ORTHO05D006143 2.5e-06 55.8 62 41.9
MBI16_g45778_MAGBIO Magnolia biondii HOM05D002401 ORTHO05D006143 3.2e-06 55.5 65 40.0
DCAR_019493 Daucus carota HOM05D002401 ORTHO05D006143 4.2e-06 55.1 55 45.5


User provided reference genes

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