Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10100 Trifolium pratense HOM05D005047 ORTHO05D006540 6.0e-106 387.5 192 100.0
Psat6g048720 Pisum sativum HOM05D005047 ORTHO05D006540 3.6e-95 351.7 172 96.5
Ca_11862_v3 Cicer arietinum L. HOM05D005047 ORTHO05D006540 2.4e-94 349.0 174 96.0
Medtr1g047390 Medicago truncatula HOM05D005047 ORTHO05D006540 2.4e-94 349.0 174 96.0
Lj6g0004838 Lotus japonicus HOM05D005047 ORTHO05D006540 1.4e-91 339.7 173 93.6
Glyma.10G125100 Glycine max HOM05D005047 ORTHO05D006540 4.2e-91 338.2 173 93.1
Lalb_Chr01g0010841 Lupinus albus HOM05D005047 ORTHO05D006540 1.6e-90 336.3 173 92.5
Phvul.007G236950 Phaseolus vulgaris HOM05D005047 ORTHO05D006540 4.6e-90 334.7 173 91.3
PGR142G1511 Punica granatum HOM05D005047 ORTHO05D006540 6.0e-90 334.3 172 90.1
Ciclev10005905m.g Citrus clementina HOM05D005047 ORTHO05D006540 1.3e-89 333.2 173 90.8
Glyma.20G077400 Glycine max HOM05D005047 ORTHO05D006540 1.3e-89 333.2 173 90.8
Haze_11554 Corylus avellana HOM05D005047 ORTHO05D006540 2.3e-89 332.4 173 90.8
Thecc.04G211900 Theobroma cacao HOM05D005047 ORTHO05D006540 1.5e-88 329.7 171 90.6
CiPaw.01G126600 Carya illinoinensis HOM05D005047 ORTHO05D006540 2.5e-88 328.9 173 88.4
GSVIVG01029046001 Vitis vinifera HOM05D005047 ORTHO05D006540 5.6e-88 327.8 173 89.6
PSO782G5131 Papaver somniferum HOM05D005047 ORTHO05D006540 1.6e-87 326.2 173 87.3
RcHm_v2.0_Chr4g0396911 Rosa chinensis HOM05D005047 ORTHO05D006540 1.6e-87 326.2 172 89.5
Dinv38281 Davidia involucrata HOM05D005047 ORTHO05D006540 3.6e-87 325.1 173 89.0
TWI73G0442 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 3.6e-87 325.1 172 87.8
PSO478G4795 Papaver somniferum HOM05D005047 ORTHO05D006540 4.8e-87 324.7 173 87.3
COL.COLO4_34082 Corchorus olitorius HOM05D005047 ORTHO05D006540 6.2e-87 324.3 171 89.5
CANSAT78G0753 Cannabis sativa HOM05D005047 ORTHO05D006540 1.1e-86 323.6 172 87.8
CANSAT78G2209 Cannabis sativa HOM05D005047 ORTHO05D006540 1.1e-86 323.6 172 87.8
Sc13g0002770 Simmondsia chinensis HOM05D005047 ORTHO05D006540 1.4e-86 323.2 171 86.5
EL10Ac3g06787 Beta vulgaris HOM05D005047 ORTHO05D006540 1.8e-86 322.8 171 87.1
Aa31LG9G3930 Aethionema arabicum HOM05D005047 ORTHO05D006540 3.1e-86 322.0 172 85.5
CsaV3_3G011290 Cucumis sativus L. HOM05D005047 ORTHO05D006540 4.0e-86 321.6 173 87.3
BcaB02g08656 Brassica carinata HOM05D005047 ORTHO05D006540 5.3e-86 321.2 172 86.0
Gorai.006G219600 Gossypium raimondii HOM05D005047 ORTHO05D006540 5.3e-86 321.2 171 87.7
Cpa.g.sc59.91 Carica papaya HOM05D005047 ORTHO05D006540 9.0e-86 320.5 171 87.7
AT4G13720 Arabidopsis thaliana HOM05D005047 ORTHO05D006540 1.2e-85 320.1 172 86.0
Thhalv10026260m.g Eutrema salsugineum HOM05D005047 ORTHO05D006540 1.2e-85 320.1 172 85.5
Sp7g11500 Schrenkiella parvula HOM05D005047 ORTHO05D006540 1.2e-85 320.1 172 85.5
AL7G42780 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 1.5e-85 319.7 172 86.0
Cc03_g07220 Coffea canephora HOM05D005047 ORTHO05D006540 1.5e-85 319.7 172 86.0
Gohir.D09G196200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 1.5e-85 319.7 171 87.7
HanXRQChr01g0022691 Helianthus annuus HOM05D005047 ORTHO05D006540 2.0e-85 319.3 174 85.6
THA.LOC104808728 Tarenaya hassleriana HOM05D005047 ORTHO05D006540 2.0e-85 319.3 171 86.0
Potri.001G052400 Populus trichocarpa HOM05D005047 ORTHO05D006540 2.6e-85 318.9 172 87.2
Eucgr.H00094 Eucalyptus grandis HOM05D005047 ORTHO05D006540 3.4e-85 318.5 172 86.6
Gohir.A09G202200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 3.4e-85 318.5 171 87.1
PGSC0003DMG400029615 Solanum tuberosum HOM05D005047 ORTHO05D006540 4.5e-85 318.2 172 86.6
Migut.N00337 Erythranthe guttata HOM05D005047 ORTHO05D006540 5.8e-85 317.8 172 86.0
Duzib212G0386 Durio zibethinus HOM05D005047 ORTHO05D006540 9.9e-85 317.0 171 86.5
C04p42210 Brassica napus HOM05D005047 ORTHO05D006540 1.3e-84 316.6 173 85.5
Sed0007809 Sechium edule HOM05D005047 ORTHO05D006540 1.3e-84 316.6 173 85.0
AL5G12130 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 1.7e-84 316.2 172 84.3
CSS0002501 Camellia sinensis var. sinensis HOM05D005047 ORTHO05D006540 1.7e-84 316.2 173 85.0
Sopen09g034350 Solanum pennellii HOM05D005047 ORTHO05D006540 1.7e-84 316.2 172 86.0
Potri.003G175800 Populus trichocarpa HOM05D005047 ORTHO05D006540 3.8e-84 315.1 172 85.5
CDE04G3429 Ceratophyllum demersum HOM05D005047 ORTHO05D006540 6.4e-84 314.3 172 83.7
Prupe.1G060800 Prunus persica HOM05D005047 ORTHO05D006540 1.4e-83 313.2 172 86.0
Solyc09g091420.4 Solanum lycopersicum HOM05D005047 ORTHO05D006540 1.9e-83 312.8 172 84.9
Nitab4.5_0010267g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 4.2e-83 311.6 172 85.5
ECA248G2813 Erigeron canadensis HOM05D005047 ORTHO05D006540 7.1e-83 310.8 171 84.2
Lj6A611T47 Lonicera japonica HOM05D005047 ORTHO05D006540 2.1e-82 309.3 173 86.1
BcaC02g09395 Brassica carinata HOM05D005047 ORTHO05D006540 3.5e-82 308.5 172 84.3
Hma1.2p1_0903F.1_g235140 Hydrangea macrophylla HOM05D005047 ORTHO05D006540 7.9e-82 307.4 173 85.0
TAR633G1642 Trochodendron aralioides HOM05D005047 ORTHO05D006540 1.3e-81 306.6 173 86.7
A04p08470 Brassica napus HOM05D005047 ORTHO05D006540 1.8e-81 306.2 173 84.4
BolC4t25799H Brassica oleracea HOM05D005047 ORTHO05D006540 1.8e-81 306.2 173 84.4
BraA04t16537Z Brassica rapa HOM05D005047 ORTHO05D006540 1.8e-81 306.2 173 84.4
HPP92_015205 Vanilla planifolia HOM05D005047 ORTHO05D006540 8.7e-81 303.9 172 80.8
Sabra03G0128700 Salix brachista HOM05D005047 ORTHO05D006540 5.6e-80 301.2 185 80.0
Os10g0457500 Oryza sativa ssp. japonica HOM05D005047 ORTHO05D006540 2.1e-79 299.3 172 80.8
Zm00001eb046670 Zea mays HOM05D005047 ORTHO05D006540 6.2e-79 297.7 172 80.8
SalBow3G2150 Salvia bowleyana HOM05D005047 ORTHO05D006540 8.1e-79 297.4 194 75.3
Hund19253 Selenicereus undatus HOM05D005047 ORTHO05D006540 3.1e-78 295.4 172 83.7
Carub.0007s2874 Capsella rubella HOM05D005047 ORTHO05D006540 9.0e-78 293.9 155 87.1
Manes.15G048800 Manihot esculenta HOM05D005047 ORTHO05D006540 1.2e-77 293.5 172 78.5
SGA_v2.0_scaffold2G00831 Striga asiatica HOM05D005047 ORTHO05D006540 1.2e-77 293.5 201 72.6
Manes.03G152700 Manihot esculenta HOM05D005047 ORTHO05D006540 2.0e-77 292.7 173 78.0
unitig_749.g13975 Utricularia gibba HOM05D005047 ORTHO05D006540 2.6e-77 292.4 182 75.8
VMungo0720G0344 Vigna mungo HOM05D005047 ORTHO05D006540 5.8e-77 291.2 225 67.1
Mapoly0026s0018 Marchantia polymorpha HOM05D005047 ORTHO05D006540 2.9e-76 288.9 169 78.1
FAN12G1457 Fragaria x ananassa HOM05D005047 ORTHO05D006540 3.2e-75 285.4 172 81.4
FAN07G0410 Fragaria x ananassa HOM05D005047 ORTHO05D006540 1.2e-74 283.5 172 80.8
Ah.13g075240 Amaranthus hybridus HOM05D005047 ORTHO05D006540 3.5e-74 282.0 171 78.9
ClCG05G003600 Citrullus lanatus HOM05D005047 ORTHO05D006540 3.5e-74 282.0 173 80.3
Lsat_1_v5_gn_0_4860 Lactuca sativa HOM05D005047 ORTHO05D006540 4.6e-74 281.6 213 67.1
AUR62032663 Chenopodium quinoa HOM05D005047 ORTHO05D006540 1.0e-73 280.4 171 79.5
Aa31LG9G3940 Aethionema arabicum HOM05D005047 ORTHO05D006540 2.3e-73 279.3 193 69.4
vmacro00514 Vaccinium macrocarpon HOM05D005047 ORTHO05D006540 2.3e-73 279.3 173 79.8
CAN.G500.97 Capsicum annuum HOM05D005047 ORTHO05D006540 3.0e-73 278.9 154 84.4
Dinv29555 Davidia involucrata HOM05D005047 ORTHO05D006540 3.3e-72 275.4 171 81.9
Pp3c16_19640 Physcomitrium patens HOM05D005047 ORTHO05D006540 4.8e-71 271.6 169 75.7
Nitab4.5_0010728g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 3.8e-68 261.9 175 74.9
SMO367G0232 Selaginella moellendorffii HOM05D005047 ORTHO05D006540 4.2e-67 258.5 166 73.5
AUR62035305 Chenopodium quinoa HOM05D005047 ORTHO05D006540 3.5e-66 255.4 234 58.5
ATR0088G035 Amborella trichopoda HOM05D005047 ORTHO05D006540 4.6e-66 255.0 140 82.9
Oeu006715.2 Olea europaea HOM05D005047 ORTHO05D006540 4.6e-66 255.0 181 71.8
AagrBONN_evm.TU.Sc2ySwM_344.3277 Anthoceros agrestis HOM05D005047 ORTHO05D006540 1.0e-65 253.8 169 70.4
Atru.chr4.1794 Acer truncatum HOM05D005047 ORTHO05D006540 4.3e-64 248.4 131 86.3
Nn3g19880 Nelumbo nucifera HOM05D005047 ORTHO05D006540 7.6e-61 237.7 173 69.4
Zm00001eb377030 Zea mays HOM05D005047 ORTHO05D006540 7.6e-61 237.7 135 78.5
MCO04G006 Micromonas commoda HOM05D005047 ORTHO05D006540 1.7e-60 236.5 161 67.7
Cre02.g095089 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 1.5e-56 223.4 167 61.7
SHI24117 Sapria himalayana HOM05D005047 ORTHO05D006540 9.7e-56 220.7 172 62.2
Actinidia37393 Actinidia chinensis HOM05D005047 ORTHO05D006540 6.3e-55 218.0 178 65.2
Rhsim09G0049500 Rhododendron simsii HOM05D005047 ORTHO05D006540 8.2e-55 217.6 181 61.9
Aqoxy2G03810 Aquilegia oxysepala HOM05D005047 ORTHO05D006540 1.1e-54 217.2 134 75.4
Peaxi162Scf00047g01312 Petunia axillaris HOM05D005047 ORTHO05D006540 1.8e-54 216.5 172 62.8
Zm00001eb086240 Zea mays HOM05D005047 ORTHO05D006540 1.5e-53 213.4 116 80.2
arahy.Tifrunner.gnm1.ann1.0X932T Arachis hypogaea HOM05D005047 ORTHO05D006540 4.5e-53 211.8 128 78.1
PRCOL_00006994 Prasinoderma coloniale HOM05D005047 ORTHO05D006540 2.9e-52 209.1 167 58.7
QL06p023224 Quercus lobata HOM05D005047 ORTHO05D006540 5.5e-51 204.9 109 84.4
CARHR219510 Cardamine hirsuta HOM05D005047 ORTHO05D006540 7.2e-51 204.5 108 83.3
MBI07_g19553_MAGBIO Magnolia biondii HOM05D005047 ORTHO05D006540 2.7e-50 202.6 211 55.5
Zm00001eb102100 Zea mays HOM05D005047 ORTHO05D006540 3.6e-50 202.2 135 71.1
MD13G1230900 Malus domestica HOM05D005047 ORTHO05D006540 2.3e-49 199.5 108 82.4
arahy.Tifrunner.gnm1.ann1.BK86JE Arachis hypogaea HOM05D005047 ORTHO05D006540 5.1e-49 198.4 173 63.6
Cfa024488 Carpinus fangiana HOM05D005047 ORTHO05D006540 1.3e-44 183.7 163 55.2
Sed0007961 Sechium edule HOM05D005047 ORTHO05D006540 8.5e-44 181.0 172 58.7
Cre13.g568950 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 1.1e-43 180.6 163 52.8
Carub.0007s2873 Capsella rubella HOM05D005047 ORTHO05D006540 1.3e-39 167.2 92 82.6
Zm00001eb177140 Zea mays HOM05D005047 ORTHO05D006540 1.1e-35 154.1 97 71.1
TWI09G0343 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 2.1e-34 149.8 97 73.2
Zm00001eb180620 Zea mays HOM05D005047 ORTHO05D006540 1.6e-29 133.7 82 72.0
Zm00001eb425490 Zea mays HOM05D005047 ORTHO05D006540 1.6e-29 133.7 74 74.3
QL06p023220 Quercus lobata HOM05D005047 ORTHO05D006540 3.2e-27 125.9 64 93.8
DCAR_002273 Daucus carota HOM05D005047 ORTHO05D006540 1.6e-26 123.6 64 92.2
FAN17G1156 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.7e-26 122.9 66 83.3
MSTRG.21943 Avicennia marina HOM05D005047 ORTHO05D006540 5.2e-25 118.6 64 87.5
MELO3C031602.2 Cucumis melo HOM05D005047 ORTHO05D006540 5.2e-25 118.6 61 93.4
TAR636G1612 Trochodendron aralioides HOM05D005047 ORTHO05D006540 1.5e-24 117.1 64 89.1
FvH4_4g05750 Fragaria vesca HOM05D005047 ORTHO05D006540 5.7e-24 115.2 60 93.3
SEGI_09208 Sequoiadendron giganteum HOM05D005047 ORTHO05D006540 1.1e-19 100.9 64 73.4
Medtr1g047400 Medicago truncatula HOM05D005047 ORTHO05D006540 6.1e-18 95.1 62 80.6
Sabra01G0036900 Salix brachista HOM05D005047 ORTHO05D006540 4.4e-16 89.0 48 81.2
CBR_g49288 Chara braunii HOM05D005047 ORTHO05D006540 7.0e-14 81.6 54 66.7
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 3.8e-12 75.9 43 86.0
arahy.Tifrunner.gnm1.ann1.FRRS2Q Arachis hypogaea HOM05D005047 ORTHO05D084578 1.1e-11 74.3 68 55.9
PRCOL_00003939 Prasinoderma coloniale HOM05D005047 ORTHO05D049269 1.9e-11 73.6 195 30.3
FvH4_6g44040 Fragaria vesca HOM05D005047 ORTHO05D006540 5.6e-11 72.0 39 82.1
EL10Ac7g17560 Beta vulgaris HOM05D005047 ORTHO05D006373 2.1e-10 70.1 38 78.9
Glyma.12G173400 Glycine max HOM05D005047 ORTHO05D006540 2.8e-10 69.7 61 63.9
EL10Ac6g14438 Beta vulgaris HOM05D005047 ORTHO05D006540 1.0e-09 67.8 38 76.3
FvH4_5g32911 Fragaria vesca HOM05D005047 ORTHO05D006540 1.4e-09 67.4 33 90.9
FAN01G1709 Fragaria x ananassa HOM05D005047 ORTHO05D006540 1.8e-09 67.0 39 76.9
Ca_28777_v3 Cicer arietinum L. HOM05D005047 ORTHO05D147776 1.2e-08 64.3 138 33.3
FAN26G2286 Fragaria x ananassa HOM05D005047 ORTHO05D006540 1.3e-07 60.8 34 82.4
FAN27G1012 Fragaria x ananassa HOM05D029863 ORTHO05D006540 4.9e-07 58.9 30 86.7
CsaV3_6G019130 Cucumis sativus L. HOM05D005047 ORTHO05D006540 1.4e-06 57.4 31 80.6


User provided reference genes

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