Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 8.3e-200 700.3 383 100.0
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 1.3e-157 560.1 428 70.3
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 1.1e-154 550.4 417 69.5
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 1.1e-151 540.4 395 72.7
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 4.4e-124 448.7 421 59.6
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 8.8e-117 424.5 421 57.7
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 7.7e-113 411.4 415 57.1
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 1.8e-109 400.2 473 51.8
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 2.8e-107 392.9 422 54.3
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 2.3e-96 356.7 354 57.9
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 1.1e-95 354.4 413 52.5
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 3.3e-95 352.8 428 53.7
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 4.3e-95 352.4 411 54.5
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 2.1e-94 350.1 410 54.6
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 1.0e-93 347.8 351 56.4
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 1.4e-93 347.4 427 51.1
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 2.3e-93 346.7 419 50.4
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 3.0e-93 346.3 463 48.2
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 8.3e-91 338.2 427 52.5
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 4.1e-90 335.9 411 50.6
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 1.2e-89 334.3 428 50.0
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 3.5e-89 332.8 407 52.8
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 3.5e-89 332.8 424 49.5
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 7.8e-89 331.6 419 52.0
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 1.3e-88 330.9 419 50.8
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 1.9e-87 327.0 408 51.5
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 1.8e-85 320.5 346 54.3
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 5.2e-85 318.9 429 50.3
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 3.4e-84 316.2 428 48.1
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 9.8e-84 314.7 401 51.1
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 2.9e-83 313.2 430 48.6
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 1.7e-80 303.9 413 55.0
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 1.2e-78 297.7 398 47.7
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 3.6e-78 296.2 399 50.6
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 3.6e-78 296.2 399 50.6
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 1.1e-77 294.7 401 48.4
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 2.3e-77 293.5 411 47.7
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 3.1e-77 293.1 433 47.1
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 4.0e-77 292.7 433 47.1
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 1.3e-75 287.7 399 48.1
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 2.9e-75 286.6 409 54.0
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 2.9e-75 286.6 441 45.1
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 2.9e-75 286.6 450 44.7
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 1.1e-74 284.6 420 49.3
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 1.4e-74 284.3 381 48.8
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 1.4e-74 284.3 421 52.7
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 4.1e-74 282.7 420 47.4
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 2.1e-73 280.4 361 49.3
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 2.1e-73 280.4 462 42.9
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 1.0e-72 278.1 383 46.5
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 6.6e-72 275.4 430 44.7
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 3.3e-71 273.1 383 48.6
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 7.3e-71 271.9 358 48.3
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 1.8e-69 267.3 412 44.4
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 1.8e-69 267.3 358 50.3
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 2.3e-69 266.9 352 50.6
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 3.1e-69 266.5 393 47.3
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 6.8e-69 265.4 493 40.4
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 1.5e-68 264.2 337 51.3
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 2.0e-68 263.8 359 50.7
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.7e-67 260.8 407 45.9
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 8.4e-67 258.5 558 37.3
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 1.9e-66 257.3 353 48.2
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 3.5e-65 253.1 400 46.2
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 4.6e-65 252.7 407 45.5
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 3.9e-64 249.6 569 36.0
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 1.1e-63 248.1 405 49.9
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 1.9e-63 247.3 335 49.6
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 3.3e-63 246.5 422 43.4
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 3.6e-62 243.0 398 45.0
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 4.7e-62 242.7 366 47.8
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 8.1e-62 241.9 359 44.8
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 3.4e-60 236.5 405 44.2
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 3.4e-60 236.5 405 42.2
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 2.2e-59 233.8 420 43.6
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 3.2e-58 229.9 440 39.8
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 4.2e-58 229.6 411 44.0
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 2.3e-56 223.8 491 37.9
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 1.9e-55 220.7 399 43.6
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 1.1e-53 214.9 323 45.8
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 2.4e-53 213.8 401 40.9
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 5.8e-52 209.1 246 52.4
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 1.1e-50 204.9 365 41.4
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 4.2e-50 203.0 382 44.5
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 1.3e-46 191.4 427 39.3
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 2.1e-46 190.7 324 42.3
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 1.2e-44 184.9 429 38.9
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 2.6e-44 183.7 412 38.6
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 5.8e-44 182.6 408 39.5
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 9.9e-44 181.8 344 40.1
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 7.1e-42 175.6 485 34.8
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 1.2e-41 174.9 421 39.0
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 1.8e-40 171.0 376 36.7
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 6.7e-40 169.1 416 37.5
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 3.3e-39 166.8 362 39.8
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 7.4e-39 165.6 409 39.1
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 9.6e-39 165.2 245 48.2
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 9.6e-39 165.2 227 52.0
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 2.1e-38 164.1 396 38.1
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 6.2e-38 162.5 338 37.9
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 1.4e-37 161.4 239 46.4
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 4.0e-37 159.8 225 48.0
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 1.3e-35 154.8 399 37.8
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 3.8e-35 153.3 346 38.2
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 1.4e-34 151.4 388 38.1
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 1.9e-34 151.0 488 32.2
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 7.1e-34 149.1 407 39.1
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 9.3e-34 148.7 198 44.9
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 1.3e-32 144.8 391 37.1
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 8.2e-30 135.6 321 36.4
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 1.3e-27 128.3 404 33.9
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 1.3e-27 128.3 404 33.9
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 2.2e-27 127.5 406 36.0
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 1.1e-23 115.2 383 32.1
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 2.2e-22 110.9 403 31.5
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 2.2e-22 110.9 328 34.1
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 2.2e-19 100.9 422 30.6
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 2.5e-18 97.4 416 31.0
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 1.6e-17 94.7 386 32.1
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 2.7e-17 94.0 362 32.9
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 3.9e-16 90.1 214 36.0
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 5.1e-16 89.7 338 30.5
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 8.8e-16 89.0 309 30.1
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 2.8e-14 84.0 321 31.2
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 6.9e-13 79.3 71 60.6
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 1.7e-11 74.7 71 59.2
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 2.9e-11 73.9 383 29.8
Lalb_Chr14g0371631 Lupinus albus HOM05D005514 ORTHO05D006563 3.8e-11 73.6 66 63.6
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 1.4e-10 71.6 228 32.9
unitig_0.g2554 Utricularia gibba HOM05D005514 ORTHO05D006563 1.4e-10 71.6 330 29.7
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 2.5e-10 70.9 37 75.7
MD15G1181500 Malus domestica HOM05D005514 ORTHO05D006563 5.5e-10 69.7 63 61.9
Lalb_Chr24g0397411 Lupinus albus HOM05D005514 ORTHO05D006563 3.0e-08 63.9 71 52.1
Lsat_1_v5_gn_5_102961 Lactuca sativa HOM05D005514 ORTHO05D006563 5.2e-08 63.2 63 61.9
Oeu064594.1 Olea europaea HOM05D005514 ORTHO05D006563 5.2e-08 63.2 72 58.3
Cc06_g09940 Coffea canephora HOM05D005514 ORTHO05D006563 1.5e-07 61.6 74 54.1
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 3.3e-07 60.5 41 61.0
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 4.4e-07 60.1 35 68.6
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 7.4e-07 59.3 36 66.7
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 2.2e-06 57.8 35 62.9
AL1G57940 Arabidopsis lyrata HOM05D005264 ORTHO05D005428 2.8e-06 57.4 61 44.3
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.8e-06 57.4 35 65.7
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.8e-06 57.4 35 65.7
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.8e-06 57.4 35 65.7
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 2.8e-06 57.4 35 65.7
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 2.8e-06 57.4 35 65.7
COL.COLO4_34822 Corchorus olitorius HOM05D005514 ORTHO05D006563 3.7e-06 57.0 74 48.6
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 3.7e-06 57.0 35 65.7
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 3.7e-06 57.0 35 65.7
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 4.8e-06 56.6 38 63.2
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 4.8e-06 56.6 56 48.2
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 6.3e-06 56.2 35 65.7
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 6.3e-06 56.2 32 68.8
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 8.2e-06 55.8 54 50.0
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 8.2e-06 55.8 34 64.7
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 8.2e-06 55.8 35 62.9
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 8.2e-06 55.8 34 67.6
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 8.2e-06 55.8 41 61.0
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 8.2e-06 55.8 36 61.1
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 8.2e-06 55.8 41 58.5
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 8.2e-06 55.8 35 65.7
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 8.2e-06 55.8 35 60.0


User provided reference genes

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