Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 0.0e+00 1421.4 806 100.0
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 0.0e+00 1129.0 837 74.9
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 0.0e+00 1127.5 837 75.0
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 6.1e-269 931.0 846 66.7
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 3.1e-228 795.8 869 58.0
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 1.7e-223 780.0 876 56.7
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 1.1e-222 777.3 875 56.5
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 2.8e-213 746.1 873 54.8
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 5.8e-211 738.4 873 54.6
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 4.2e-201 705.7 864 54.1
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 1.2e-200 704.1 862 53.1
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 2.4e-188 663.3 855 52.6
Phvul.002G312500 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 5.7e-126 456.1 868 41.4
Glyma.08G037800 Glycine max HOM05D005593 ORTHO05D006515 2.5e-121 440.7 842 42.0
VMungo0251G1265 Vigna mungo HOM05D005593 ORTHO05D006515 1.2e-120 438.3 868 41.1
Glyma.05G230300 Glycine max HOM05D005593 ORTHO05D006515 3.5e-115 420.2 860 40.2
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 8.9e-103 379.0 877 36.9
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 1.4e-100 371.7 872 37.0
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 4.3e-97 360.1 888 35.4
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 7.3e-97 359.4 872 35.7
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 1.4e-95 355.1 864 35.8
arahy.Tifrunner.gnm1.ann1.31F9U3 Arachis hypogaea HOM05D005593 ORTHO05D006515 3.1e-95 354.0 501 47.5
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 3.4e-94 350.5 905 33.3
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 1.3e-93 348.6 920 34.2
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 2.7e-91 340.9 897 35.0
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 3.3e-89 334.0 894 33.1
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 1.8e-87 328.2 872 33.6
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 2.4e-87 327.8 892 33.2
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 2.0e-86 324.7 854 35.8
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 7.6e-86 322.8 877 34.2
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.4e-84 317.8 909 33.3
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 3.5e-83 313.9 894 35.0
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 4.6e-83 313.5 895 33.9
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 3.9e-82 310.5 903 33.6
QL02p044157 Quercus lobata HOM05D005593 ORTHO05D006515 3.9e-82 310.5 871 33.5
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 5.1e-82 310.1 917 33.0
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 3.6e-80 303.9 898 32.2
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 6.2e-80 303.1 879 33.4
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.1e-79 302.4 876 33.2
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 9.0e-79 299.3 854 33.5
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 7.6e-78 296.2 888 33.0
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.6e-75 288.5 876 32.5
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 2.1e-75 288.1 989 29.5
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 6.0e-75 286.6 811 33.5
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 6.7e-74 283.1 812 33.6
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 4.8e-72 276.9 842 32.7
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 1.1e-71 275.8 906 31.6
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 1.1e-71 275.8 894 30.9
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 1.8e-71 275.0 903 31.1
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 5.3e-71 273.5 938 31.6
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 3.4e-70 270.8 915 31.4
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 3.5e-67 260.8 911 30.0
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 8.7e-66 256.1 947 28.6
Sc08g0007580 Simmondsia chinensis HOM05D005593 ORTHO05D006515 1.9e-65 255.0 866 30.8
GSVIVG01015371001 Vitis vinifera HOM05D005593 ORTHO05D006515 1.3e-64 252.3 729 33.7
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 1.1e-63 249.2 881 30.3
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 1.1e-63 249.2 846 30.3
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 3.1e-63 247.7 918 29.8
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 9.0e-63 246.1 600 35.2
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 2.2e-61 241.5 1036 27.4
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 1.1e-60 239.2 870 27.1
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 2.7e-59 234.6 904 29.3
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 3.6e-59 234.2 838 28.4
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 6.1e-59 233.4 877 29.5
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 3.9e-58 230.7 1028 27.6
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 3.7e-56 224.2 954 28.7
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 3.8e-53 214.2 957 28.0
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 5.0e-53 213.8 851 29.5
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 1.1e-52 212.6 830 28.6
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.1e-52 212.6 966 26.1
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 2.5e-52 211.5 813 27.9
Nitab4.5_0009314g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 9.4e-52 209.5 861 27.9
Peaxi162Scf01363g00023 Petunia axillaris HOM05D005593 ORTHO05D006515 2.7e-51 208.0 888 27.3
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 6.1e-51 206.8 971 24.9
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 1.0e-50 206.1 904 29.5
EL10Ac8g18455 Beta vulgaris HOM05D005593 ORTHO05D006515 1.4e-50 205.7 879 28.4
CsaV3_1G024390 Cucumis sativus L. HOM05D005593 ORTHO05D006515 5.1e-50 203.8 812 28.1
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 3.3e-49 201.1 302 47.4
Ah.14g082180 Amaranthus hybridus HOM05D005593 ORTHO05D006515 1.7e-48 198.7 874 28.3
Nitab4.5_0002904g0040 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.4e-47 195.7 844 27.4
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 3.4e-46 191.0 877 27.4
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 1.7e-45 188.7 633 29.7
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 5.0e-45 187.2 834 28.4
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 5.0e-45 187.2 917 25.7
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 6.5e-45 186.8 919 25.9
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 6.1e-43 180.3 942 26.9
PGSC0003DMG400000308 Solanum tuberosum HOM05D005593 ORTHO05D006515 7.9e-43 179.9 862 27.6
HanXRQChr12g0355541 Helianthus annuus HOM05D000246 ORTHO05D008363 3.9e-42 177.6 820 27.0
Sopen12g003130 Solanum pennellii HOM05D005593 ORTHO05D006515 6.7e-42 176.8 854 26.6
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 1.1e-41 176.0 875 25.9
Actinidia20382 Actinidia chinensis HOM05D005593 ORTHO05D006515 3.3e-41 174.5 711 28.4
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 5.7e-41 173.7 827 26.8
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.6e-38 164.9 575 29.0
Ah.09g231030 Amaranthus hybridus HOM05D005593 ORTHO05D006515 1.0e-37 162.9 858 25.4
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 2.2e-37 161.8 896 27.0
ClCG11G002410 Citrullus lanatus HOM05D005593 ORTHO05D006515 4.2e-36 157.5 450 34.0
SalBow6G5362 Salvia bowleyana HOM05D005593 ORTHO05D006515 5.5e-36 157.1 838 25.5
Solyc12g007140.3 Solanum lycopersicum HOM05D005593 ORTHO05D006515 2.1e-35 155.2 745 26.4
THA.LOC104804597 Tarenaya hassleriana HOM05D005593 ORTHO05D006515 1.4e-34 152.5 832 27.5
DCAR_028703 Daucus carota HOM05D005593 ORTHO05D006515 1.3e-32 146.0 743 26.1
CsaV3_2G002210 Cucumis sativus L. HOM05D005593 ORTHO05D006515 2.2e-32 145.2 611 29.8
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 5.3e-31 140.6 817 25.5
Carub.0003s2504 Capsella rubella HOM05D005593 ORTHO05D006515 5.3e-31 140.6 838 25.9
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 1.2e-30 139.4 145 54.5
MELO3C004562.2 Cucumis melo HOM05D005593 ORTHO05D006515 1.6e-30 139.0 566 29.9
Sed0018005 Sechium edule HOM05D005593 ORTHO05D006515 2.7e-30 138.3 418 32.3
Lalb_Chr16g0388151 Lupinus albus HOM05D005593 ORTHO05D006515 5.9e-30 137.1 167 50.3
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 7.7e-30 136.7 994 23.9
Hund09124 Selenicereus undatus HOM05D005593 ORTHO05D006515 1.7e-29 135.6 907 24.5
AL3G40252 Arabidopsis lyrata HOM05D005593 ORTHO05D006515 3.6e-27 127.9 837 25.2
A07p07590 Brassica napus HOM05D005593 ORTHO05D006515 2.3e-26 125.2 819 25.4
BraA07t28551Z Brassica rapa HOM05D005593 ORTHO05D006515 2.3e-26 125.2 819 25.4
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 3.0e-26 124.8 148 46.6
AT3G24630 Arabidopsis thaliana HOM05D005593 ORTHO05D006515 1.7e-24 119.0 830 24.7
Sp3g22410 Schrenkiella parvula HOM05D005593 ORTHO05D006515 1.7e-24 119.0 831 24.2
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.7e-24 119.0 165 40.6
Thhalv10002425m.g Eutrema salsugineum HOM05D005593 ORTHO05D006515 3.7e-24 117.9 818 25.4
C07p11350 Brassica napus HOM05D005593 ORTHO05D006515 2.4e-23 115.2 836 24.2
BolC7t41613H Brassica oleracea HOM05D005593 ORTHO05D006515 2.7e-22 111.7 828 25.8
BcaB06g26676 Brassica carinata HOM05D005593 ORTHO05D006515 5.9e-22 110.5 827 25.0
BolC7t41614H Brassica oleracea HOM05D005593 ORTHO05D006515 7.7e-22 110.2 319 34.8
BcaC06g35744 Brassica carinata HOM05D005593 ORTHO05D006515 1.0e-21 109.8 825 25.7
Rhsim01G0099500 Rhododendron simsii HOM05D005593 ORTHO05D006515 2.2e-21 108.6 162 40.1
CARHR100960 Cardamine hirsuta HOM05D005593 ORTHO05D006515 7.2e-20 103.6 824 24.6
Eucgr.C01030 Eucalyptus grandis HOM05D005593 ORTHO05D006515 6.1e-19 100.5 166 38.0
Sed0026051 Sechium edule HOM05D005593 ORTHO05D006515 3.4e-17 94.7 590 25.9
HPP92_023948 Vanilla planifolia HOM05D005593 ORTHO05D006515 3.4e-17 94.7 774 24.5
Rhsim01G0099800 Rhododendron simsii HOM05D005593 ORTHO05D006515 3.7e-16 91.3 391 28.6
CSS0008305 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 1.6e-14 85.9 164 34.1
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 4.5e-14 84.3 980 21.7
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 6.6e-13 80.5 169 34.3
Os01g0228800 Oryza sativa ssp. japonica HOM05D042755 ORTHO05D006515 1.1e-12 79.7 725 23.7
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 2.8e-11 75.1 758 22.7
CDE02G1606 Ceratophyllum demersum HOM05D005593 ORTHO05D006515 4.7e-11 74.3 165 31.5
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 1.8e-10 72.4 205 35.6
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 6.8e-10 70.5 169 31.4
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 8.9e-10 70.1 171 30.4
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 8.9e-10 70.1 171 30.4
HPP92_023915 Vanilla planifolia HOM05D005593 ORTHO05D006515 1.2e-09 69.7 405 27.9
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 2.0e-09 68.9 171 29.8
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 2.6e-09 68.6 169 29.0
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 2.6e-09 68.6 169 29.0
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 1.3e-08 66.2 239 28.9
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 2.2e-08 65.5 127 33.9
Zm00001eb339200 Zea mays HOM05D042755 ORTHO05D006515 2.2e-08 65.5 733 22.5
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 2.9e-08 65.1 166 30.1
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 2.9e-08 65.1 236 30.1
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 6.4e-08 63.9 171 28.7
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 6.4e-08 63.9 173 29.5
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 1.4e-07 62.8 251 25.1
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 1.4e-07 62.8 842 21.0
Cfa005599 Carpinus fangiana HOM05D005593 ORTHO05D006515 1.8e-07 62.4 55 56.4
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 3.2e-07 61.6 171 28.7
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 3.2e-07 61.6 260 26.5
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 5.4e-07 60.8 885 21.0
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 7.0e-07 60.5 274 24.8
HPP92_023926 Vanilla planifolia HOM05D005593 ORTHO05D006515 7.0e-07 60.5 125 33.6
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 9.2e-07 60.1 270 25.9
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 1.2e-06 59.7 307 25.7
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 1.2e-06 59.7 834 21.3
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 2.0e-06 58.9 235 28.9
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 2.0e-06 58.9 827 22.4
RcHm_v2.0_Chr6g0300941 Rosa chinensis HOM05D006788 ORTHO05D008265 2.0e-06 58.9 175 28.0
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 2.7e-06 58.5 247 25.5
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 3.5e-06 58.2 781 22.5
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 3.5e-06 58.2 219 27.9
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 4.6e-06 57.8 840 22.0
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 5.9e-06 57.4 757 20.7
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 7.8e-06 57.0 252 26.6
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 7.8e-06 57.0 274 26.3


User provided reference genes

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