Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 1.0e-69 266.5 130 100.0
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 1.8e-45 186.0 131 77.1
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 1.1e-37 160.2 119 73.1
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 1.1e-37 160.2 120 73.3
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 1.1e-34 150.2 130 60.8
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 7.0e-34 147.5 128 61.7
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 4.6e-33 144.8 134 59.7
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 1.0e-32 143.7 126 61.1
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 3.0e-32 142.1 131 58.8
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 3.9e-32 141.7 110 72.7
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 2.6e-28 129.0 127 56.7
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 4.9e-27 124.8 105 63.8
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 8.6e-24 114.0 101 59.4
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 1.9e-23 112.8 116 54.3
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 5.6e-23 111.3 121 56.2
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 5.6e-23 111.3 122 52.5
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 9.5e-23 110.5 117 53.0
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 2.4e-21 105.9 122 50.8
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 3.1e-21 105.5 96 61.5
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 8.9e-21 104.0 93 58.1
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 4.4e-20 101.7 102 53.9
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 1.3e-19 100.1 115 53.0
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 2.9e-19 99.0 119 51.3
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 2.9e-19 99.0 100 56.0
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 4.9e-19 98.2 117 49.6
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 1.4e-18 96.7 120 50.0
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 1.4e-18 96.7 95 56.8
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 1.9e-18 96.3 115 47.8
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 3.2e-18 95.5 118 47.5
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 4.2e-18 95.1 99 55.6
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 9.2e-18 94.0 106 53.8
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 1.2e-17 93.6 119 50.4
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 1.2e-17 93.6 117 47.0
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 2.7e-17 92.4 115 47.0
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.0e-16 90.5 76 59.2
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 1.3e-16 90.1 119 47.9
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.3e-16 90.1 95 51.6
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 1.3e-16 90.1 95 51.6
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 1.7e-16 89.7 116 48.3
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 1.7e-16 89.7 105 51.4
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 3.0e-16 89.0 93 53.8
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 1.5e-15 86.7 93 52.7
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 1.5e-15 86.7 110 49.1
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 1.5e-15 86.7 113 46.0
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 2.5e-15 85.9 93 52.7
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 7.3e-15 84.3 102 49.0
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 9.6e-15 84.0 118 44.9
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 9.6e-15 84.0 85 52.9
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 9.6e-15 84.0 152 38.2
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 9.6e-15 84.0 109 45.0
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.6e-14 83.2 93 50.5
arahy.Tifrunner.gnm1.ann1.K9PA59 Arachis hypogaea HOM05D006882 ORTHO05D008688 2.1e-14 82.8 65 61.5
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 2.8e-14 82.4 123 43.9
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 3.6e-14 82.0 76 57.9
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 4.8e-14 81.6 114 44.7
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 4.8e-14 81.6 112 46.4
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 6.2e-14 81.3 97 50.5
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 8.1e-14 80.9 85 50.6
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 1.4e-13 80.1 110 43.6
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 2.4e-13 79.3 118 40.7
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 3.1e-13 79.0 94 54.3
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 4.0e-13 78.6 78 57.7
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 5.3e-13 78.2 104 44.2
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 6.9e-13 77.8 109 44.0
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 1.2e-12 77.0 72 55.6
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.5e-12 76.6 78 56.4
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 2.0e-12 76.3 54 64.8
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 3.4e-12 75.5 60 58.3
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 3.4e-12 75.5 60 58.3
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 3.4e-12 75.5 60 58.3
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 3.4e-12 75.5 60 56.7
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 4.4e-12 75.1 60 58.3
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 4.4e-12 75.1 93 45.2
Gohir.D09G008650 Gossypium hirsutum HOM05D006882 ORTHO05D008688 4.4e-12 75.1 75 48.0
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 4.4e-12 75.1 113 45.1
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 5.8e-12 74.7 54 64.8
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 5.8e-12 74.7 54 63.0
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 7.6e-12 74.3 98 44.9
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 1.3e-11 73.6 123 43.9
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 1.7e-11 73.2 115 45.2
Gorai.006G010400 Gossypium raimondii HOM05D006882 ORTHO05D008688 2.2e-11 72.8 75 46.7
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 2.2e-11 72.8 63 55.6
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 2.2e-11 72.8 123 41.5
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 2.9e-11 72.4 63 54.0
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 3.8e-11 72.0 126 40.5
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 8.4e-11 70.9 76 50.0
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 1.4e-10 70.1 68 52.9
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 2.4e-10 69.3 45 73.3
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 3.2e-10 68.9 100 45.0
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 3.2e-10 68.9 99 40.4
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 4.2e-10 68.6 73 50.7
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 4.2e-10 68.6 73 50.7
PSO017G6201 Papaver somniferum HOM05D006882 ORTHO05D008688 7.1e-10 67.8 112 43.8
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 2.1e-09 66.2 100 42.0
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 2.1e-09 66.2 93 44.1
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 3.5e-09 65.5 103 42.7
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 3.5e-09 65.5 119 36.1
Gohir.A09G009600 Gossypium hirsutum HOM05D006882 ORTHO05D008688 4.6e-09 65.1 111 40.5
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 4.6e-09 65.1 57 54.4
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 6.0e-09 64.7 46 63.0
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 6.0e-09 64.7 81 46.9
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 3.9e-08 62.0 84 42.9
MBI16_g10826_MAGBIO Magnolia biondii HOM05D006882 ORTHO05D008688 1.9e-07 59.7 61 50.8
Peaxi162Scf00298g00055 Petunia axillaris HOM05D006882 ORTHO05D008688 3.3e-07 58.9 62 48.4
ATR0177G043 Amborella trichopoda HOM05D006882 ORTHO05D008688 7.3e-07 57.8 104 42.3
Mapoly0103s0008 Marchantia polymorpha HOM05D022139 ORTHO05D008688 1.6e-06 56.6 111 36.0
CsaV3_5G014380 Cucumis sativus L. HOM05D006882 ORTHO05D008688 2.1e-06 56.2 48 58.3
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 2.8e-06 55.8 56 51.8


User provided reference genes

Program Settings