Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104826997 Tarenaya hassleriana HOM05D007321 ORTHO05D009244 1.1e-273 946.0 482 100.0
CARHR083990 Cardamine hirsuta HOM05D007321 ORTHO05D009244 7.5e-214 747.3 480 78.3
Sp3g07930 Schrenkiella parvula HOM05D007321 ORTHO05D009244 7.7e-211 737.3 482 78.0
Carub.0003s0867 Capsella rubella HOM05D007321 ORTHO05D009244 5.5e-209 731.1 482 78.6
AT3G09580 Arabidopsis thaliana HOM05D007321 ORTHO05D009244 1.6e-208 729.6 483 76.8
AL3G20750 Arabidopsis lyrata HOM05D007321 ORTHO05D009244 3.0e-207 725.3 470 77.9
BcaC05g29686 Brassica carinata HOM05D007321 ORTHO05D009244 3.4e-206 721.8 481 77.1
A05p39470 Brassica napus HOM05D007321 ORTHO05D009244 5.4e-204 714.5 481 76.9
BraA05t22728Z Brassica rapa HOM05D007321 ORTHO05D009244 7.0e-204 714.1 481 76.3
C05p58490 Brassica napus HOM05D007321 ORTHO05D009244 2.7e-203 712.2 481 76.7
BolC5t34500H Brassica oleracea HOM05D007321 ORTHO05D009244 7.7e-203 710.7 481 76.5
Thhalv10003042m.g Eutrema salsugineum HOM05D007321 ORTHO05D009244 6.3e-197 691.0 484 74.8
Aa31LG3G2030 Aethionema arabicum HOM05D007321 ORTHO05D009244 2.4e-196 689.1 501 72.7
Thecc.02G143600 Theobroma cacao HOM05D007321 ORTHO05D009244 3.4e-182 642.1 488 68.6
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 3.9e-178 628.6 468 68.4
Atru.chr6.902 Acer truncatum HOM05D007321 ORTHO05D009244 8.6e-178 627.5 486 66.9
Duzib052G0820 Durio zibethinus HOM05D007321 ORTHO05D009244 1.6e-176 623.2 429 72.0
Manes.16G135300 Manihot esculenta HOM05D007321 ORTHO05D009244 1.6e-176 623.2 487 65.9
Sabra16G0223900 Salix brachista HOM05D007321 ORTHO05D009244 1.6e-176 623.2 447 70.9
Potri.001G344800 Populus trichocarpa HOM05D007321 ORTHO05D009244 4.7e-176 621.7 447 69.6
CiPaw.05G039000 Carya illinoinensis HOM05D007321 ORTHO05D009244 8.9e-175 617.5 443 69.1
VMungo0251G3312 Vigna mungo HOM05D007321 ORTHO05D009244 9.9e-174 614.0 449 69.3
Gorai.012G140200 Gossypium raimondii HOM05D007321 ORTHO05D009244 1.3e-173 613.6 434 70.5
Cfa005577 Carpinus fangiana HOM05D007321 ORTHO05D009244 1.7e-173 613.2 456 68.4
Gohir.A04G112300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 3.7e-173 612.1 435 70.3
GSVIVG01029706001 Vitis vinifera HOM05D007321 ORTHO05D009244 3.7e-173 612.1 448 68.5
Lj5P243T60 Lonicera japonica HOM05D007321 ORTHO05D009244 8.3e-173 610.9 444 70.0
Gohir.D04G153300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 1.9e-172 609.8 434 70.3
Phvul.002G206500 Phaseolus vulgaris HOM05D007321 ORTHO05D009244 1.9e-172 609.8 447 69.1
TWI59G1034 Tripterygium wilfordii HOM05D007321 ORTHO05D009244 2.1e-171 606.3 486 63.8
Glyma.05G120300 Glycine max HOM05D007321 ORTHO05D009244 2.7e-171 605.9 480 65.6
Eucgr.I02693 Eucalyptus grandis HOM05D007321 ORTHO05D009244 3.5e-171 605.5 480 67.5
Ciclev10004047m.g Citrus clementina HOM05D007321 ORTHO05D009244 6.0e-171 604.7 430 71.2
QL11p019400 Quercus lobata HOM05D007321 ORTHO05D009244 6.0e-171 604.7 433 69.5
Dinv19324 Davidia involucrata HOM05D007321 ORTHO05D009244 1.0e-170 604.0 469 67.2
MD03G1054600 Malus domestica HOM05D007321 ORTHO05D009244 1.3e-170 603.6 463 66.1
Actinidia28071 Actinidia chinensis HOM05D007321 ORTHO05D009244 2.3e-170 602.8 433 70.4
CANSAT80G1420 Cannabis sativa HOM05D007321 ORTHO05D009244 3.9e-170 602.1 439 68.3
Lj4g0025169 Lotus japonicus HOM05D007321 ORTHO05D009244 3.9e-170 602.1 426 70.0
RcHm_v2.0_Chr5g0072531 Rosa chinensis HOM05D007321 ORTHO05D009244 1.5e-169 600.1 477 64.8
Medtr4g094295 Medicago truncatula HOM05D007321 ORTHO05D009244 2.5e-169 599.4 426 68.5
Nn1g05198 Nelumbo nucifera HOM05D007321 ORTHO05D009244 5.6e-169 598.2 438 69.4
FvH4_3g40270 Fragaria vesca HOM05D007321 ORTHO05D009244 9.5e-169 597.4 470 66.0
Psat1g188000 Pisum sativum HOM05D007321 ORTHO05D009244 6.2e-168 594.7 475 64.4
Lsat_1_v5_gn_7_80180 Lactuca sativa HOM05D007321 ORTHO05D009244 1.1e-167 594.0 441 68.7
FAN11G3563 Fragaria x ananassa HOM05D007321 ORTHO05D009244 3.1e-167 592.4 429 69.0
FAN16G2899 Fragaria x ananassa HOM05D007321 ORTHO05D009244 3.1e-167 592.4 429 69.0
FAN25G3421 Fragaria x ananassa HOM05D007321 ORTHO05D009244 3.1e-167 592.4 429 69.2
Rhsim05G0110900 Rhododendron simsii HOM05D007321 ORTHO05D009244 4.0e-167 592.0 437 68.6
FAN21G2259 Fragaria x ananassa HOM05D007321 ORTHO05D009244 5.2e-167 591.7 428 69.2
Migut.B00640 Erythranthe guttata HOM05D007321 ORTHO05D009244 8.9e-167 590.9 487 63.4
Oeu037200.1 Olea europaea HOM05D007321 ORTHO05D009244 8.9e-167 590.9 432 69.9
PGR142G0984 Punica granatum HOM05D007321 ORTHO05D009244 2.6e-166 589.3 444 67.8
Aqoxy6G00494 Aquilegia oxysepala HOM05D007321 ORTHO05D009244 3.4e-166 589.0 445 67.0
ClCG10G015890 Citrullus lanatus HOM05D007321 ORTHO05D009244 2.9e-165 585.9 434 67.3
ECA236G2671 Erigeron canadensis HOM05D007321 ORTHO05D009244 6.4e-165 584.7 444 65.1
Sc14g0002750 Simmondsia chinensis HOM05D007321 ORTHO05D009244 1.1e-164 583.9 476 63.0
Ah.14g085390 Amaranthus hybridus HOM05D007321 ORTHO05D009244 1.9e-164 583.2 486 62.3
HanXRQChr11g0337111 Helianthus annuus HOM05D007321 ORTHO05D009244 1.9e-164 583.2 435 68.0
Prupe.6G043200 Prunus persica HOM05D007321 ORTHO05D009244 1.9e-164 583.2 470 63.4
MELO3C009790.2 Cucumis melo HOM05D007321 ORTHO05D009244 7.1e-164 581.3 474 62.9
Sopen02g028190 Solanum pennellii HOM05D007321 ORTHO05D009244 7.1e-164 581.3 484 62.8
Cc02_g21870 Coffea canephora HOM05D007321 ORTHO05D009244 1.6e-163 580.1 435 67.4
PGSC0003DMG400003660 Solanum tuberosum HOM05D007321 ORTHO05D009244 1.6e-163 580.1 443 66.1
Solyc02g083410.4 Solanum lycopersicum HOM05D007321 ORTHO05D009244 2.7e-163 579.3 481 62.8
EL10Ac8g19338 Beta vulgaris HOM05D007321 ORTHO05D009244 3.5e-163 578.9 430 67.2
DCAR_021840 Daucus carota HOM05D000446 ORTHO05D000321 3.5e-163 578.9 432 68.1
MSTRG.16564 Avicennia marina HOM05D007321 ORTHO05D009244 4.6e-163 578.6 480 63.5
Lalb_Chr07g0189441 Lupinus albus HOM05D007321 ORTHO05D009244 6.0e-163 578.2 487 62.2
Nitab4.5_0007385g0020 Nicotiana tabacum HOM05D007321 ORTHO05D009244 8.7e-162 574.3 433 66.1
SalBow5G3411 Salvia bowleyana HOM05D007321 ORTHO05D009244 1.9e-161 573.2 474 63.9
Nitab4.5_0002105g0030 Nicotiana tabacum HOM05D007321 ORTHO05D009244 2.5e-161 572.8 433 66.3
CsaV3_3G040590 Cucumis sativus L. HOM05D007321 ORTHO05D009244 9.6e-161 570.9 430 65.6
PSO541G5651 Papaver somniferum HOM05D007321 ORTHO05D009244 1.1e-159 567.4 428 65.9
SGA_v2.0_scaffold332G48942 Striga asiatica HOM05D007321 ORTHO05D009244 1.1e-159 567.4 444 64.9
MBI05_g36588_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 4.0e-159 565.5 467 63.2
Sed0000618 Sechium edule HOM05D007321 ORTHO05D009244 7.6e-158 561.2 431 64.7
Peaxi162Scf00328g00127 Petunia axillaris HOM05D007321 ORTHO05D009244 4.9e-157 558.5 483 60.2
AUR62027387 Chenopodium quinoa HOM05D007321 ORTHO05D009244 8.4e-157 557.8 407 67.8
PSO675G7953 Papaver somniferum HOM05D007321 ORTHO05D009244 3.2e-156 555.8 461 61.6
CSS0020188 Camellia sinensis var. sinensis HOM05D007321 ORTHO05D009244 7.3e-153 544.7 482 62.2
SEGI_02418 Sequoiadendron giganteum HOM05D007321 ORTHO05D009244 5.4e-148 528.5 430 61.9
ATR0580G200 Amborella trichopoda HOM05D007321 ORTHO05D009244 4.0e-143 512.3 452 59.3
Pp3c2_19910 Physcomitrium patens HOM05D007321 ORTHO05D009244 1.1e-137 494.2 428 59.1
Mapoly0005s0009 Marchantia polymorpha HOM05D007321 ORTHO05D009244 3.1e-135 486.1 433 58.7
CDE06G0306 Ceratophyllum demersum HOM05D007321 ORTHO05D009244 2.9e-133 479.6 438 57.3
SMO116G0156 Selaginella moellendorffii HOM05D007321 ORTHO05D009244 3.2e-132 476.1 426 57.0
Ca_18334_v3 Cicer arietinum L. HOM05D005078 ORTHO05D007574 4.2e-132 475.7 397 62.7
TPR.G10452 Trifolium pratense HOM05D007321 ORTHO05D009244 6.9e-127 458.4 369 62.1
Zm00001eb328010 Zea mays HOM05D007321 ORTHO05D009244 8.5e-125 451.4 428 55.6
Cre12.g560900 Chlamydomonas reinhardtii HOM05D007321 ORTHO05D009244 1.0e-117 427.9 472 51.9
AagrBONN_evm.TU.Sc2ySwM_344.1849 Anthoceros agrestis HOM05D007321 ORTHO05D009244 1.7e-117 427.2 434 50.9
Os07g0626800 Oryza sativa ssp. japonica HOM05D007321 ORTHO05D009244 1.6e-115 420.6 403 56.1
TAR381G1665 Trochodendron aralioides HOM05D007321 ORTHO05D009244 1.3e-109 401.0 294 70.7
CBR_g49724 Chara braunii HOM05D007321 ORTHO05D009244 7.4e-105 385.2 452 46.2
MCO04G135 Micromonas commoda HOM05D007321 ORTHO05D009244 1.3e-101 374.4 443 46.0
Cpa.g.sc52.12 Carica papaya HOM05D007321 ORTHO05D009244 1.5e-100 370.9 269 67.3
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 4.2e-100 369.4 422 48.3
MBI05_g44827_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 3.3e-84 316.6 291 58.1
CAN.G890.33 Capsicum annuum HOM05D007321 ORTHO05D009244 1.0e-82 311.6 435 42.1
AagrBONN_evm.TU.Sc2ySwM_344.1850 Anthoceros agrestis HOM05D007321 ORTHO05D009244 3.0e-69 266.9 221 57.9
unitig_8.g3471 Utricularia gibba HOM05D007321 ORTHO05D009244 9.8e-65 251.9 231 60.6
AUR62031301 Chenopodium quinoa HOM05D007321 ORTHO05D009244 4.0e-50 203.4 145 66.2
unitig_8.g3470 Utricularia gibba HOM05D007321 ORTHO05D009244 6.4e-48 196.1 148 59.5
MBI05_g44826_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 6.2e-35 152.9 117 62.4
HPP92_016846 Vanilla planifolia HOM05D007321 ORTHO05D009244 1.1e-26 125.6 115 59.1
TAR381G1585 Trochodendron aralioides HOM05D007321 ORTHO05D009244 6.7e-21 106.3 86 65.1
Ah.15g094770 Amaranthus hybridus HOM05D002360 ORTHO05D006971 2.6e-09 67.8 466 22.5
BcaC04g19052 Brassica carinata HOM05D007163 ORTHO05D009213 3.4e-09 67.4 186 30.6
C09p62940 Brassica napus HOM05D007163 ORTHO05D009213 3.4e-09 67.4 186 30.6
Lalb_Chr23g0278241 Lupinus albus HOM05D002360 ORTHO05D006971 7.7e-09 66.2 529 22.7
Psat5g097840 Pisum sativum HOM05D002182 ORTHO05D008382 7.7e-09 66.2 479 22.5
BolC9t59131H Brassica oleracea HOM05D007163 ORTHO05D009213 1.3e-08 65.5 173 31.8
TAR371G0365 Trochodendron aralioides HOM05D002360 ORTHO05D006971 1.3e-08 65.5 476 22.5
Nn3g19797 Nelumbo nucifera HOM05D007321 ORTHO05D009244 2.9e-08 64.3 51 66.7
Ca_08364_v3 Cicer arietinum L. HOM05D007163 ORTHO05D009213 6.5e-08 63.2 187 28.3
BcaB08g36967 Brassica carinata HOM05D007163 ORTHO05D009213 1.4e-07 62.0 177 31.6
AT5G14220 Arabidopsis thaliana HOM05D007163 ORTHO05D009213 1.9e-07 61.6 172 30.8
TPR.G38344 Trifolium pratense HOM05D007163 ORTHO05D009213 1.9e-07 61.6 186 28.0
Glyma.11G253000 Glycine max HOM05D002360 ORTHO05D006971 2.5e-07 61.2 474 21.5
PSO135G0985 Papaver somniferum HOM05D002360 ORTHO05D006971 2.5e-07 61.2 468 22.4
BraA10t44490Z Brassica rapa HOM05D007163 ORTHO05D009213 4.2e-07 60.5 175 28.0
A10p24250 Brassica napus HOM05D007163 ORTHO05D009213 7.2e-07 59.7 173 30.6
FvH4_6g53090 Fragaria vesca HOM05D007163 ORTHO05D009213 7.2e-07 59.7 89 39.3
FAN09G2097 Fragaria x ananassa HOM05D007163 ORTHO05D009213 7.2e-07 59.7 89 39.3
FAN14G4233 Fragaria x ananassa HOM05D007163 ORTHO05D009213 7.2e-07 59.7 89 39.3
PSO063G0972 Papaver somniferum HOM05D007163 ORTHO05D009213 7.2e-07 59.7 259 24.7
Aqoxy7G00909 Aquilegia oxysepala HOM05D002360 ORTHO05D006971 9.4e-07 59.3 475 21.9
AL6G24890 Arabidopsis lyrata HOM05D007163 ORTHO05D009213 9.4e-07 59.3 173 30.6
PSO135G0108 Papaver somniferum HOM05D002360 ORTHO05D006971 9.4e-07 59.3 468 22.0
Pp3c1_4180 Physcomitrium patens HOM05D007163 ORTHO05D009213 9.4e-07 59.3 81 38.3
MBI19_g32880_MAGBIO Magnolia biondii HOM05D002360 ORTHO05D006971 1.2e-06 58.9 469 21.7
QL02p071962 Quercus lobata HOM05D007163 ORTHO05D009213 1.2e-06 58.9 188 27.1
VMungo1383G0373 Vigna mungo HOM05D002182 ORTHO05D008382 2.1e-06 58.2 470 21.7
Sp6g29810 Schrenkiella parvula HOM05D007163 ORTHO05D009213 2.7e-06 57.8 181 28.7
CARHR199120 Cardamine hirsuta HOM05D007163 ORTHO05D009213 3.6e-06 57.4 166 28.3
Aa31LG11G15010 Aethionema arabicum HOM05D007163 ORTHO05D009213 4.6e-06 57.0 190 27.9
arahy.Tifrunner.gnm1.ann1.YX4IN3 Arachis hypogaea HOM05D001254 ORTHO05D001386 4.6e-06 57.0 86 39.5
Ah.11g045340 Amaranthus hybridus HOM05D007163 ORTHO05D009213 6.1e-06 56.6 84 38.1
Medtr7g031310 Medicago truncatula HOM05D007163 ORTHO05D009213 6.1e-06 56.6 185 27.6
Os04g0490000 Oryza sativa ssp. japonica HOM05D007163 ORTHO05D009213 6.1e-06 56.6 91 38.5
EL10Ac2g03213 Beta vulgaris HOM05D007163 ORTHO05D009213 7.9e-06 56.2 77 39.0
Hund03067 Selenicereus undatus HOM05D001254 ORTHO05D001386 7.9e-06 56.2 286 24.8


User provided reference genes

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