Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 6.4e-310 1066.6 557 100.0
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 2.2e-270 935.3 558 86.7
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 9.8e-250 866.7 552 81.3
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 1.2e-247 859.8 551 80.6
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 5.9e-247 857.4 548 81.0
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 2.9e-246 855.1 550 80.0
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 2.7e-244 848.6 550 79.8
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 3.4e-242 841.6 551 78.9
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 1.3e-241 839.7 551 78.8
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 5.5e-237 824.3 551 77.3
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 7.2e-237 823.9 551 78.2
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 7.2e-237 823.9 551 77.5
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 8.0e-236 820.5 551 77.1
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 1.4e-235 819.7 552 77.0
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 1.4e-216 756.5 545 71.9
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 3.0e-214 748.8 537 71.3
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 1.1e-213 746.9 554 70.6
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 3.3e-213 745.3 537 71.1
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 3.3e-213 745.3 549 71.0
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 1.2e-212 743.4 551 70.8
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 4.7e-212 741.5 544 71.9
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 7.6e-210 734.2 560 69.6
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 3.9e-206 721.8 553 68.0
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 1.5e-205 719.9 560 67.5
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 2.5e-205 719.2 541 70.4
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 3.3e-205 718.8 560 67.7
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 7.3e-205 717.6 564 68.4
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 1.2e-204 716.8 546 70.0
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 2.1e-204 716.1 538 69.5
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 8.1e-204 714.1 553 68.2
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 1.4e-203 713.4 528 70.5
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 8.9e-203 710.7 560 67.7
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 2.9e-201 705.7 522 70.7
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 2.4e-200 702.6 565 65.8
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 3.2e-200 702.2 543 68.7
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 1.6e-199 699.9 521 68.7
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 3.5e-199 698.7 554 65.7
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 3.5e-199 698.7 550 66.7
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 1.3e-198 696.8 566 66.1
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 1.7e-198 696.4 547 66.5
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 3.0e-198 695.7 521 68.3
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 3.0e-198 695.7 542 68.3
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 3.9e-198 695.3 565 64.8
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 8.7e-198 694.1 547 66.9
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 1.1e-197 693.7 511 68.7
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 3.3e-197 692.2 556 66.7
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 4.3e-197 691.8 525 69.5
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 5.6e-197 691.4 544 66.5
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 7.3e-197 691.0 553 66.0
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 2.1e-196 689.5 543 67.4
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.1e-196 689.5 543 67.4
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 8.1e-196 687.6 549 65.0
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 1.8e-195 686.4 547 67.1
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 4.0e-195 685.3 558 65.9
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 5.3e-195 684.9 547 66.5
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 6.9e-195 684.5 558 65.4
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 1.5e-194 683.3 543 64.8
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 3.4e-194 682.2 566 64.0
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 5.8e-194 681.4 566 63.8
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.3e-193 680.2 543 67.4
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 1.3e-193 680.2 586 62.8
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 4.9e-193 678.3 547 65.4
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 6.4e-193 677.9 543 67.2
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 2.4e-192 676.0 556 64.7
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 7.1e-192 674.5 543 66.9
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 9.3e-192 674.1 566 63.6
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 2.7e-191 672.5 533 64.4
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 1.3e-190 670.2 531 65.7
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 1.7e-190 669.8 549 65.4
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 2.3e-190 669.5 541 64.3
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 3.0e-190 669.1 559 64.0
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 1.1e-189 667.2 560 64.6
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 3.6e-188 662.1 541 65.1
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 1.1e-187 660.6 586 61.8
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 1.8e-187 659.8 547 65.1
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 9.0e-187 657.5 540 63.0
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 1.2e-186 657.1 547 64.7
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 1.5e-186 656.8 619 59.5
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 3.4e-186 655.6 574 61.5
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 9.9e-186 654.1 526 64.3
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 2.9e-185 652.5 554 63.9
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 1.2e-183 647.1 560 61.2
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 3.3e-181 639.0 468 69.0
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 5.6e-181 638.3 547 62.9
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 7.4e-181 637.9 554 62.6
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 1.2e-178 630.6 549 62.1
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 4.5e-178 628.6 555 60.7
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 1.7e-177 626.7 543 62.1
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 3.8e-177 625.5 561 60.1
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 3.8e-177 625.5 569 61.2
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 2.4e-171 606.3 529 60.1
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 2.2e-169 599.7 516 60.7
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 1.6e-164 583.6 499 59.7
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 3.8e-161 572.4 453 65.1
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 5.5e-160 568.5 579 55.1
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 3.9e-150 535.8 513 57.5
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 2.2e-148 530.0 598 50.2
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 2.2e-140 503.4 503 56.5
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 1.6e-138 497.3 338 76.6
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 7.7e-138 495.0 537 53.1
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 1.0e-137 494.6 389 67.9
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 1.0e-129 468.0 357 70.0
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 7.2e-128 461.8 466 51.7
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 6.1e-127 458.8 462 55.8
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 6.6e-121 438.7 359 65.5
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 8.6e-121 438.3 395 62.3
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 2.7e-114 416.8 305 70.8
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 3.3e-112 409.8 305 69.8
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 3.6e-111 406.4 514 44.0
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.4e-107 394.4 295 68.8
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 2.4e-107 393.7 295 66.8
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 1.7e-105 387.5 393 53.4
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 9.8e-101 371.7 341 59.8
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 1.3e-100 371.3 341 59.5
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 1.3e-100 371.3 274 68.6
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 7.6e-93 345.5 564 39.4
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 4.9e-92 342.8 552 38.0
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 8.9e-86 322.0 512 37.9
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 1.1e-80 305.1 256 62.9
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 4.8e-79 299.7 271 60.1
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 4.0e-62 243.4 164 72.6
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 2.3e-57 227.6 546 32.2
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 1.3e-49 201.8 189 52.4
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 1.6e-47 194.9 260 47.7
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 6.9e-46 189.5 179 57.0
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 3.8e-36 157.1 115 69.6
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 8.5e-36 156.0 363 27.0
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 7.2e-35 152.9 428 26.4
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 9.1e-30 136.0 613 27.1
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 1.3e-28 132.1 378 27.5
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 1.6e-26 125.2 107 63.6
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 5.7e-24 116.7 71 76.1
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 9.7e-24 115.9 86 67.4
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 2.2e-23 114.8 543 24.5
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 4.8e-23 113.6 162 43.2
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 5.3e-22 110.2 452 25.0
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 1.7e-20 105.1 136 44.1
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 5.0e-20 103.6 153 41.8
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 3.2e-19 100.9 562 23.7
Cre06.g278550 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.2e-10 72.4 406 21.9
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 1.5e-08 65.5 225 27.1
RcHm_v2.0_Chr7g0187121 Rosa chinensis HOM05D005160 ORTHO05D006127 1.5e-08 65.5 44 70.5
MD08G1139200 Malus domestica HOM05D005160 ORTHO05D006127 4.4e-08 63.9 94 48.9
Glyma.08G315000 Glycine max HOM05D005160 ORTHO05D006127 2.2e-07 61.6 50 60.0
AagrBONN_evm.TU.Sc2ySwM_362.248 Anthoceros agrestis HOM05D003356 ORTHO05D004362 5.4e-06 57.0 325 24.6


User provided reference genes

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