Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 0.0e+00 1548.9 814 100.0
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 1.0e-308 1063.1 807 73.7
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 1.3e-255 886.7 821 61.9
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 3.9e-255 885.2 813 62.7
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 2.1e-253 879.4 822 61.6
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 1.6e-237 826.6 797 61.1
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 9.9e-235 817.4 823 59.4
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 1.7e-234 816.6 803 59.9
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 9.9e-227 790.8 831 57.5
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 6.3e-213 745.0 818 56.8
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 1.2e-211 740.7 818 56.6
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 3.4e-211 739.2 800 57.0
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 1.7e-210 736.9 800 56.9
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 2.0e-190 670.2 793 52.7
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 1.9e-185 653.7 806 50.5
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 1.6e-184 650.6 792 51.3
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 9.7e-182 641.3 826 49.2
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 1.1e-180 637.9 800 49.6
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 1.8e-180 637.1 803 50.9
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 2.4e-180 636.7 800 49.6
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 4.1e-180 636.0 799 50.8
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 1.2e-179 634.4 811 49.7
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 2.0e-179 633.6 799 50.7
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 4.5e-179 632.5 817 48.7
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 1.3e-178 630.9 824 48.9
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 4.2e-177 625.9 801 48.8
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 9.4e-177 624.8 812 49.9
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 6.1e-176 622.1 814 48.5
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 1.4e-175 620.9 824 47.8
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 6.8e-175 618.6 884 45.9
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.2e-174 617.8 785 50.4
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 1.2e-174 617.8 803 47.9
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 1.2e-174 617.8 805 48.2
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 1.2e-174 617.8 802 49.3
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 1.5e-174 617.5 800 49.2
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 3.1e-172 609.8 795 47.3
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 5.4e-172 609.0 812 46.9
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 7.0e-172 608.6 802 47.3
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 9.1e-172 608.2 801 47.9
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 9.1e-172 608.2 818 47.8
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 1.2e-171 607.8 789 48.3
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 5.9e-171 605.5 794 47.1
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 1.0e-170 604.7 798 47.7
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 5.0e-170 602.4 801 47.2
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 3.2e-169 599.7 792 49.2
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 5.5e-169 599.0 848 45.9
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.6e-168 597.4 824 47.6
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 1.5e-166 590.9 792 46.7
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 2.6e-166 590.1 815 47.0
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 2.8e-165 586.6 802 46.6
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 2.8e-165 586.6 815 48.1
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 4.9e-165 585.9 810 46.9
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 6.3e-165 585.5 785 47.0
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 3.1e-164 583.2 812 47.5
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 2.7e-163 580.1 803 47.1
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 3.5e-163 579.7 795 46.7
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 3.5e-163 579.7 795 46.3
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 5.9e-163 578.9 794 48.6
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 7.8e-163 578.6 836 45.5
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 6.6e-162 575.5 800 45.5
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 6.6e-162 575.5 785 46.8
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 1.1e-161 574.7 814 47.2
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 1.5e-161 574.3 816 47.1
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 2.5e-161 573.5 791 47.4
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 3.3e-161 573.2 826 45.9
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 4.3e-161 572.8 798 47.4
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 7.3e-161 572.0 788 46.7
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 1.0e-159 568.2 821 45.3
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 1.2e-158 564.7 782 45.7
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 1.2e-158 564.7 783 46.2
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 2.0e-158 563.9 853 44.4
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 5.7e-158 562.4 792 46.1
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 3.7e-157 559.7 807 45.5
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 3.2e-156 556.6 786 47.3
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 3.2e-156 556.6 795 45.7
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 9.2e-156 555.1 793 46.8
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 1.6e-155 554.3 797 45.5
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.0e-154 551.6 793 46.7
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 1.7e-154 550.8 763 47.4
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 3.0e-154 550.1 809 46.1
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 1.2e-150 538.1 790 44.7
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 2.6e-150 537.0 823 45.6
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 3.7e-149 533.1 812 44.3
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 1.4e-148 531.2 768 45.2
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 3.2e-148 530.0 813 43.7
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 3.2e-148 530.0 799 44.8
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 1.6e-147 527.7 801 43.9
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 1.9e-145 520.8 819 43.6
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 2.1e-144 517.3 801 43.1
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 4.7e-144 516.2 685 49.1
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 4.1e-140 503.1 797 44.8
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 2.7e-139 500.4 687 46.0
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 1.9e-137 494.2 793 43.1
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 4.3e-137 493.0 796 44.2
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 4.0e-135 486.5 785 44.2
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.0e-130 471.9 672 46.6
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.1e-127 461.8 784 41.3
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 7.3e-121 439.1 846 38.2
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 4.8e-120 436.4 519 51.3
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 2.4e-119 434.1 798 40.6
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 2.0e-118 431.0 746 41.6
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 7.6e-118 429.1 863 38.4
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 2.4e-116 424.1 877 37.2
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 9.9e-110 402.1 788 38.8
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 2.0e-102 377.9 474 47.5
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 2.0e-102 377.9 771 37.5
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 7.6e-102 375.9 877 34.5
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 9.1e-87 325.9 814 33.2
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 1.3e-85 322.0 861 34.7
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 1.5e-81 308.5 579 37.7
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 3.7e-80 303.9 578 39.6
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 1.2e-62 245.7 504 36.3
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 1.2e-59 235.7 503 36.4
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 1.0e-58 232.6 496 35.5
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 7.0e-55 219.9 226 54.0
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 5.9e-46 190.3 188 55.3
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 6.8e-42 176.8 789 27.0
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 4.4e-41 174.1 471 32.5
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 1.1e-39 169.5 198 51.0
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 2.0e-38 165.2 807 26.4
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 3.3e-36 157.9 661 29.8
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 4.7e-35 154.1 373 34.0
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 2.0e-33 148.7 112 67.0
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 5.4e-31 140.6 248 37.9
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 3.1e-26 124.8 203 43.3
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 3.4e-25 121.3 144 48.6
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 1.9e-23 115.5 150 44.0
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 4.9e-16 90.9 110 45.5
Lj9A5T14 Lonicera japonica HOM05D016202 ORTHO05D006406 6.2e-11 73.9 153 37.9
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 2.4e-10 72.0 100 47.0
Lju1034A2T22 Lonicera japonica HOM05D016202 ORTHO05D006406 4.4e-09 67.8 74 47.3
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 5.8e-09 67.4 79 48.1
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 7.6e-09 67.0 47 70.2
Lju1609C0G6 Lonicera japonica HOM05D016202 ORTHO05D006406 1.1e-07 63.2 69 46.4
Lju1609C0T10 Lonicera japonica HOM05D005855 ORTHO05D006406 1.1e-07 63.2 66 50.0
Cre12.g550152 Chlamydomonas reinhardtii HOM05D005855 ORTHO05D006406 4.6e-06 57.8 164 31.1


User provided reference genes

Program Settings