Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 1.2e-261 906.0 455 100.0
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 7.8e-213 743.8 457 82.5
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 3.1e-209 731.9 437 84.9
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 6.4e-207 724.2 457 79.9
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 3.2e-206 721.8 459 81.3
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.2e-205 719.9 459 79.5
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 2.7e-205 718.8 457 79.6
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 8.6e-204 713.8 458 79.9
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 1.5e-203 713.0 458 79.9
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 2.5e-203 712.2 458 78.4
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 8.1e-202 707.2 459 79.7
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 4.0e-201 704.9 458 79.0
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 2.6e-200 702.2 454 79.5
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 8.4e-199 697.2 451 78.9
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 7.1e-198 694.1 458 76.6
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 7.1e-198 694.1 457 76.4
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 1.6e-197 693.0 455 78.5
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 1.6e-197 693.0 455 78.5
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 2.1e-197 692.6 457 77.0
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 3.5e-197 691.8 457 76.8
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 3.5e-197 691.8 462 74.9
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 4.6e-197 691.4 459 75.8
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.0e-196 690.3 457 76.6
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 1.3e-196 689.9 455 78.0
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 6.6e-196 687.6 457 78.3
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 5.6e-195 684.5 448 79.2
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 5.6e-195 684.5 449 79.1
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 9.6e-195 683.7 466 75.3
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 4.0e-193 678.3 454 78.6
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 1.2e-192 676.8 457 75.5
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 2.9e-191 672.2 455 77.8
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 2.9e-191 672.2 458 74.0
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 3.8e-191 671.8 453 77.3
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 8.4e-191 670.6 455 77.6
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 1.4e-190 669.8 457 74.0
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 4.2e-190 668.3 450 74.7
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 9.3e-190 667.2 457 74.0
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 3.5e-189 665.2 452 77.0
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 1.7e-188 662.9 471 72.2
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 1.7e-188 662.9 455 74.5
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 3.9e-188 661.8 458 74.5
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 5.1e-188 661.4 451 76.9
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 1.5e-187 659.8 456 73.0
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 4.3e-187 658.3 449 76.4
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 1.6e-186 656.4 455 73.6
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 3.6e-186 655.2 456 71.9
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 8.1e-186 654.1 455 72.1
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.1e-185 653.7 458 73.1
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 1.8e-185 652.9 455 73.6
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 3.1e-185 652.1 437 76.4
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 3.4e-184 648.7 459 71.5
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 5.8e-184 647.9 477 71.9
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 5.8e-184 647.9 458 73.1
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 3.8e-183 645.2 459 71.2
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 4.9e-183 644.8 465 70.5
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 4.9e-183 644.8 459 71.2
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 1.1e-182 643.7 459 71.5
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 1.1e-182 643.7 457 72.6
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 1.9e-182 642.9 457 73.7
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 1.9e-182 642.9 455 72.1
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 5.4e-182 641.3 451 74.5
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 7.1e-182 641.0 459 71.2
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 2.1e-181 639.4 480 70.6
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 2.7e-181 639.0 458 71.8
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 7.9e-181 637.5 454 73.1
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 1.0e-180 637.1 461 70.1
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.8e-180 636.3 449 73.1
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 3.9e-180 635.2 471 70.5
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 5.1e-180 634.8 449 73.3
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 6.7e-180 634.4 458 71.0
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 2.5e-179 632.5 458 71.0
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 3.3e-179 632.1 449 72.8
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 4.3e-179 631.7 458 70.1
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 7.4e-179 630.9 450 74.7
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 3.7e-178 628.6 490 67.3
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 8.1e-178 627.5 449 72.6
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 2.6e-176 622.5 455 71.0
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 7.6e-176 620.9 454 69.6
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 9.9e-176 620.5 455 70.8
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 2.2e-175 619.4 457 70.0
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 6.4e-175 617.8 441 71.4
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 1.9e-174 616.3 535 61.7
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 4.2e-174 615.1 453 69.8
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 2.1e-173 612.8 435 72.9
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 4.6e-173 611.7 427 73.3
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 4.6e-173 611.7 449 70.4
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 6.0e-173 611.3 476 68.1
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 2.3e-172 609.4 455 70.1
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 3.9e-172 608.6 452 68.8
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 5.1e-172 608.2 452 69.9
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 5.1e-172 608.2 452 68.6
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 6.7e-172 607.8 487 66.5
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 6.7e-172 607.8 457 68.9
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 3.3e-171 605.5 452 69.0
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 4.3e-171 605.1 451 70.3
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 9.6e-171 604.0 448 69.6
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 3.7e-170 602.1 454 69.4
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 4.8e-170 601.7 448 70.8
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 6.2e-170 601.3 452 69.0
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 8.2e-170 600.9 447 69.6
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 1.4e-169 600.1 447 69.6
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 2.4e-169 599.4 449 69.7
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 4.0e-169 598.6 428 71.0
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 2.0e-168 596.3 450 68.4
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.7e-167 593.2 451 68.1
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 3.8e-167 592.0 452 68.1
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 5.5e-166 588.2 451 66.7
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 2.1e-165 586.3 451 66.7
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 3.9e-164 582.0 446 67.7
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 1.1e-161 573.9 413 70.2
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 1.8e-161 573.2 459 67.1
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 6.9e-161 571.2 421 71.3
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 1.1e-158 563.9 438 66.0
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 6.1e-157 558.1 439 68.3
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 7.9e-157 557.8 439 68.3
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 3.3e-155 552.4 443 66.4
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 2.4e-153 546.2 465 63.2
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 2.6e-152 542.7 514 57.6
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 9.4e-150 534.3 417 67.4
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 6.1e-149 531.6 421 66.7
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 6.7e-148 528.1 448 63.8
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 1.8e-145 520.0 445 61.6
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 7.7e-144 514.6 431 65.4
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 4.7e-141 505.4 343 76.4
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 4.7e-141 505.4 427 61.4
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 6.1e-141 505.0 453 60.3
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.1e-134 484.2 406 64.3
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 2.5e-134 483.0 458 58.7
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 7.0e-129 464.9 518 54.1
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 7.2e-126 454.9 289 79.2
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.1e-125 453.4 378 64.0
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 6.8e-124 448.4 430 55.1
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.8e-116 423.7 324 68.2
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 5.2e-116 422.2 463 53.1
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 2.3e-111 406.8 462 50.6
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 5.0e-111 405.6 455 50.8
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.8e-109 399.8 250 80.0
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 2.2e-106 390.2 457 48.8
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.4e-97 360.1 319 61.8
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.3e-95 354.4 307 63.8
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 4.9e-90 335.9 193 83.4
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 3.0e-87 326.6 459 44.7
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 2.8e-85 320.1 193 83.9
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 2.8e-77 293.5 216 69.0
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.1e-76 291.6 289 57.1
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 3.4e-75 286.6 526 39.2
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 9.9e-75 285.0 193 73.1
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 1.7e-74 284.3 307 51.1
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.5e-70 271.2 203 69.0
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 6.4e-66 255.8 158 81.0
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 1.2e-64 251.5 185 70.3
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 2.3e-63 247.3 263 54.0
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 6.7e-63 245.7 236 58.9
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 9.3e-57 225.3 120 92.5
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 4.8e-53 213.0 281 47.7
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 9.0e-52 208.8 220 52.3
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 6.5e-50 202.6 171 59.1
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 5.5e-49 199.5 130 77.7
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 9.7e-46 188.7 136 68.4
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 1.7e-42 177.9 477 31.9
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 2.2e-42 177.6 516 29.7
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 8.2e-37 159.1 293 35.2
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 8.5e-34 149.1 167 46.7
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 6.7e-31 139.4 156 49.4
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 8.2e-29 132.5 79 78.5
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 5.3e-28 129.8 87 67.8
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.2e-27 128.6 79 86.1
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 1.4e-25 121.7 112 63.4
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 8.0e-24 115.9 154 49.4
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 1.5e-22 111.7 74 78.4
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 5.7e-22 109.8 122 56.6
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 2.6e-19 100.9 125 50.4
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 8.8e-15 85.9 52 78.8
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 7.0e-12 76.3 107 47.7
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 3.5e-11 73.9 48 79.2
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 5.9e-11 73.2 53 71.7
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 5.9e-11 73.2 51 70.6
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 1.1e-09 68.9 76 53.9
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.9e-09 68.2 63 54.0
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 1.5e-06 58.5 36 69.4
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 2.0e-06 58.2 58 50.0
arahy.Tifrunner.gnm1.ann1.EDPG13 Arachis hypogaea HOM05D003961 ORTHO05D038865 7.5e-06 56.2 111 39.6
Lsat_1_v5_gn_6_25880 Lactuca sativa HOM05D000267 ORTHO05D029881 7.5e-06 56.2 35 74.3
Glyma.02G160100 Glycine max HOM05D002054 ORTHO05D005362 9.8e-06 55.8 150 29.3


User provided reference genes

Program Settings