Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 2.2e-33 145.2 81 100.0
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 5.9e-23 110.5 86 73.3
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 4.3e-21 104.4 63 71.4
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 7.3e-21 103.6 87 69.0
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 7.3e-21 103.6 63 71.4
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 9.5e-21 103.2 65 69.2
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 1.6e-20 102.4 87 67.8
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 8.0e-20 100.1 65 67.7
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 8.0e-20 100.1 65 67.7
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 8.0e-20 100.1 65 67.7
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 1.1e-19 99.8 68 67.6
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 5.2e-19 97.4 65 66.2
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 5.2e-19 97.4 65 66.2
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 1.5e-18 95.9 65 64.6
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 1.5e-18 95.9 63 68.3
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 1.5e-18 95.9 61 67.2
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 1.7e-17 92.4 67 62.7
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 3.7e-17 91.3 85 62.4
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 2.4e-16 88.6 72 56.9
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 3.2e-16 88.2 86 62.8
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 1.2e-15 86.3 83 65.1
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 2.7e-15 85.1 65 58.5
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 4.6e-15 84.3 86 61.6
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 6.0e-15 84.0 83 50.6
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 7.8e-15 83.6 66 59.1
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 1.0e-14 83.2 66 59.1
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 1.3e-14 82.8 59 59.3
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 2.3e-14 82.0 87 51.7
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 5.0e-14 80.9 66 56.1
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 6.6e-14 80.5 85 57.6
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 1.1e-13 79.7 66 56.1
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 3.3e-13 78.2 54 63.0
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 4.3e-13 77.8 67 55.2
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 4.3e-13 77.8 57 59.6
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 1.2e-12 76.3 80 47.5
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 2.1e-12 75.5 68 54.4
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 2.8e-12 75.1 61 55.7
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 2.8e-12 75.1 58 55.2
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 3.6e-12 74.7 57 59.6
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 6.2e-12 73.9 88 61.4
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 8.1e-12 73.6 84 52.4
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 1.1e-11 73.2 58 53.4
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 1.1e-11 73.2 58 53.4
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 1.1e-11 73.2 58 53.4
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 1.1e-11 73.2 58 53.4
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 1.4e-11 72.8 64 54.7
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 1.4e-11 72.8 60 56.7
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 2.3e-11 72.0 67 52.2
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 3.1e-11 71.6 87 41.4
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 4.0e-11 71.2 66 53.0
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 8.9e-11 70.1 80 56.2
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 1.5e-10 69.3 59 50.8
Gohir.D01G011700 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.5e-10 69.3 53 58.5
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 1.5e-10 69.3 48 56.2
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 2.0e-10 68.9 71 45.1
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 2.6e-10 68.6 54 53.7
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 3.4e-10 68.2 43 67.4
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 3.4e-10 68.2 43 67.4
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 3.4e-10 68.2 43 67.4
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 4.4e-10 67.8 66 51.5
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 7.5e-10 67.0 68 47.1
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 9.9e-10 66.6 52 53.8
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 1.3e-09 66.2 54 50.0
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 2.2e-09 65.5 52 48.1
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 2.9e-09 65.1 66 47.0
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 2.9e-09 65.1 46 58.7
Psat3g150320 Pisum sativum HOM05D007709 ORTHO05D009577 2.9e-09 65.1 55 56.4
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 3.7e-09 64.7 58 51.7
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 6.4e-09 63.9 65 44.6
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 6.4e-09 63.9 65 44.6
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 6.4e-09 63.9 84 42.9
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 8.3e-09 63.5 75 41.3
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 8.3e-09 63.5 63 49.2
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 1.1e-08 63.2 59 49.2
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 1.9e-08 62.4 64 50.0
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 4.1e-08 61.2 73 52.1
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 4.1e-08 61.2 73 52.1
Potri.009G167700 Populus trichocarpa HOM05D007709 ORTHO05D009577 3.0e-06 55.1 69 46.4


User provided reference genes

Program Settings