Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.8e-124 448.7 243 100.0
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 9.2e-112 407.1 243 89.7
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.1e-111 406.0 243 90.9
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 1.6e-100 369.8 243 82.3
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 1.6e-100 369.8 243 82.3
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 2.8e-100 369.0 243 82.7
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 6.2e-100 367.9 243 81.5
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 6.2e-100 367.9 243 81.9
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 2.4e-99 365.9 243 81.5
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 3.1e-99 365.5 243 81.1
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 4.0e-99 365.2 243 81.9
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 6.9e-99 364.4 243 81.1
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 1.5e-98 363.2 243 81.1
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 4.4e-98 361.7 243 81.1
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 4.4e-98 361.7 243 80.7
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 3.8e-97 358.6 244 80.7
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 8.4e-97 357.5 243 80.2
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 8.4e-97 357.5 243 80.2
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 1.4e-96 356.7 246 80.9
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 3.2e-96 355.5 248 79.0
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 7.1e-96 354.4 246 80.5
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 1.3e-92 343.6 243 75.7
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 5.8e-90 334.7 243 72.8
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 6.4e-89 331.3 243 74.1
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 6.4e-89 331.3 242 73.1
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 8.4e-89 330.9 243 73.7
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.4e-88 330.1 243 74.9
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 2.4e-88 329.3 245 73.9
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 3.2e-88 328.9 243 73.3
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 7.1e-88 327.8 243 73.3
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 9.3e-88 327.4 243 73.7
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 9.3e-88 327.4 243 74.5
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 9.3e-88 327.4 243 72.4
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 1.2e-87 327.0 243 72.4
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.6e-87 326.6 243 72.8
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 2.1e-87 326.2 243 73.3
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 2.7e-87 325.9 243 73.7
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 1.0e-86 323.9 243 72.4
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.8e-86 323.2 243 72.0
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 2.3e-86 322.8 244 72.1
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 2.3e-86 322.8 244 73.0
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 6.7e-86 321.2 243 72.0
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 8.7e-86 320.9 243 71.6
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 8.7e-86 320.9 243 71.2
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 1.1e-85 320.5 243 72.8
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 1.5e-85 320.1 243 71.2
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 1.5e-85 320.1 244 69.3
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 1.9e-85 319.7 243 71.2
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 4.3e-85 318.5 243 70.8
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 4.3e-85 318.5 243 71.2
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 5.6e-85 318.2 243 70.8
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 7.4e-85 317.8 244 69.3
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 7.4e-85 317.8 243 70.4
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 1.3e-84 317.0 244 70.9
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 2.1e-84 316.2 243 71.2
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 2.8e-84 315.8 243 69.1
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 3.7e-84 315.5 243 70.0
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 3.7e-84 315.5 243 70.8
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 4.8e-84 315.1 243 70.0
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 4.8e-84 315.1 243 69.5
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 6.2e-84 314.7 244 71.3
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 6.2e-84 314.7 243 69.5
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.1e-83 313.9 244 71.3
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 1.4e-83 313.5 243 68.7
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 4.0e-83 312.0 244 69.3
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 5.3e-83 311.6 244 68.9
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 6.9e-83 311.2 244 68.0
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 2.0e-82 309.7 243 70.0
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 2.0e-82 309.7 243 67.5
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 2.6e-82 309.3 237 69.2
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 2.6e-82 309.3 245 67.3
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 4.5e-82 308.5 240 70.8
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 5.8e-82 308.1 244 67.2
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 7.6e-82 307.8 284 63.4
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 1.7e-81 306.6 243 68.7
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 2.2e-81 306.2 244 68.9
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 6.4e-81 304.7 245 66.1
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 8.4e-81 304.3 244 68.4
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 1.9e-80 303.1 243 68.7
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 5.5e-80 301.6 272 63.2
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 5.5e-80 301.6 243 67.5
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 7.1e-80 301.2 244 67.2
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 9.3e-80 300.8 243 68.3
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 9.3e-80 300.8 222 73.0
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 1.2e-79 300.4 244 67.2
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 1.6e-79 300.1 243 67.5
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 1.6e-79 300.1 241 70.5
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 2.1e-79 299.7 196 80.6
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 2.7e-79 299.3 241 69.7
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 4.6e-79 298.5 239 69.0
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 6.0e-79 298.1 243 69.1
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 1.8e-78 296.6 244 66.0
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 2.3e-78 296.2 244 65.6
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 5.1e-78 295.0 243 65.0
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 5.1e-78 295.0 260 65.4
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 6.7e-78 294.7 244 65.6
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 1.1e-77 293.9 244 63.1
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 1.9e-77 293.1 243 65.4
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 1.9e-77 293.1 244 63.9
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 2.5e-77 292.7 260 65.0
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 3.3e-77 292.4 280 61.1
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 4.3e-77 292.0 243 65.0
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 9.6e-77 290.8 233 68.2
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 2.1e-76 289.7 222 69.8
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 2.8e-76 289.3 233 67.0
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.4e-75 287.0 196 78.1
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 2.4e-75 286.2 246 64.2
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 4.0e-75 285.4 197 76.6
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 6.9e-75 284.6 244 63.5
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 2.0e-74 283.1 283 60.8
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 2.6e-74 282.7 222 68.9
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 2.6e-74 282.7 196 75.5
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 2.6e-74 282.7 292 57.5
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 5.8e-74 281.6 244 63.1
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 7.6e-74 281.2 225 68.9
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 1.0e-73 280.8 230 65.7
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 3.8e-73 278.9 196 74.0
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 6.5e-73 278.1 230 65.7
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 8.4e-73 277.7 202 69.8
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 1.1e-72 277.3 275 57.8
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 2.5e-72 276.2 196 75.5
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 2.5e-72 276.2 196 74.5
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 7.1e-72 274.6 196 71.4
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 9.3e-72 274.2 199 73.4
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.2e-71 273.9 204 71.6
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.2e-71 273.9 199 72.9
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.1e-71 273.1 199 72.4
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 3.0e-62 242.7 244 56.6
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 5.1e-62 241.9 188 69.7
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 8.8e-62 241.1 181 70.2
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 4.3e-61 238.8 175 70.9
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 1.7e-60 236.9 222 61.3
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 3.9e-54 215.7 155 73.5
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 8.8e-54 214.5 196 62.8
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 7.2e-48 194.9 212 54.2
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 1.1e-45 187.6 135 69.6
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 1.1e-45 187.6 155 64.5
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 2.6e-37 159.8 112 74.1
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 7.7e-34 148.3 149 57.0
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 7.7e-34 148.3 173 52.6
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 1.5e-32 144.1 130 58.5
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 4.2e-32 142.5 198 42.4
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 1.4e-30 137.5 223 44.8
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 5.4e-27 125.6 234 41.5
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 9.1e-27 124.8 235 34.5
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 2.7e-26 123.2 219 37.0
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.8e-22 110.5 238 37.0
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 1.2e-21 107.8 178 36.5
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 1.5e-21 107.5 192 34.9
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 2.0e-21 107.1 101 59.4
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 9.5e-16 88.2 63 73.0
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 2.8e-15 86.7 96 51.0
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 6.8e-14 82.0 180 38.9
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 2.4e-11 73.6 77 53.2
MCO03G035 Micromonas commoda HOM05D002293 ORTHO05D005475 5.4e-11 72.4 178 32.0
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 6.6e-09 65.5 64 59.4
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 1.6e-07 60.8 50 70.0
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 6.2e-07 58.9 40 82.5
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 3.1e-06 56.6 99 43.4


User provided reference genes

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