Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104805529 Tarenaya hassleriana HOM05D003328 ORTHO05D003722 2.7e-117 426.0 339 100.0
Potri.017G100600 Populus trichocarpa HOM05D003328 ORTHO05D003722 9.5e-22 108.6 200 42.0
Potri.004G114300 Populus trichocarpa HOM05D003328 ORTHO05D003722 2.1e-21 107.5 196 40.8
Sabra17G0086600 Salix brachista HOM05D003328 ORTHO05D003722 4.7e-21 106.3 197 42.6
Manes.02G059700 Manihot esculenta HOM05D003328 ORTHO05D003722 6.1e-21 105.9 190 42.6
Sabra04G0071400 Salix brachista HOM05D003328 ORTHO05D003722 1.2e-19 101.7 191 39.3
Thecc.04G106800 Theobroma cacao HOM05D003328 ORTHO05D003722 2.6e-19 100.5 187 40.6
MSTRG.15433 Avicennia marina HOM05D003328 ORTHO05D003722 4.4e-19 99.8 146 46.6
Cpa.g.sc541.5 Carica papaya HOM05D003328 ORTHO05D003722 1.3e-18 98.2 144 46.5
Atru.chr8.639 Acer truncatum HOM05D003328 ORTHO05D003722 2.8e-18 97.1 149 45.0
Glyma.08G251500 Glycine max HOM05D003328 ORTHO05D003722 2.8e-18 97.1 193 42.0
TWI34G1159 Tripterygium wilfordii HOM05D003328 ORTHO05D003722 2.8e-18 97.1 191 41.9
Dinv34907 Davidia involucrata HOM05D003328 ORTHO05D003722 4.9e-18 96.3 195 40.5
CSS0050346 Camellia sinensis var. sinensis HOM05D003328 ORTHO05D003722 6.3e-18 95.9 191 42.4
Hma1.2p1_1837F.1_g304780 Hydrangea macrophylla HOM05D003328 ORTHO05D003722 8.3e-18 95.5 194 41.2
Duzib211G0567 Durio zibethinus HOM05D003328 ORTHO05D003722 1.1e-17 95.1 189 41.3
Atru.chr8.632 Acer truncatum HOM05D003328 ORTHO05D003722 1.4e-17 94.7 149 45.6
Eucgr.J01410 Eucalyptus grandis HOM05D003328 ORTHO05D003722 1.4e-17 94.7 195 39.0
Ciclev10012100m.g Citrus clementina HOM05D003328 ORTHO05D003722 3.2e-17 93.6 191 38.2
Lj2g0016580 Lotus japonicus HOM05D003328 ORTHO05D003722 3.2e-17 93.6 214 42.5
SalBow1G5190 Salvia bowleyana HOM05D003328 ORTHO05D003722 5.4e-17 92.8 132 47.0
Glyma.18G274200 Glycine max HOM05D003328 ORTHO05D003722 7.0e-17 92.4 193 42.0
Glyma.19G034900 Glycine max HOM05D003328 ORTHO05D003722 9.2e-17 92.0 214 35.0
Atru.chr8.633 Acer truncatum HOM05D003328 ORTHO05D003722 1.2e-16 91.7 149 44.3
Prupe.3G248600 Prunus persica HOM05D003328 ORTHO05D003722 1.2e-16 91.7 192 39.1
COL.COLO4_19736 Corchorus olitorius HOM05D003328 ORTHO05D003722 1.6e-16 91.3 180 40.6
C02p07970 Brassica napus HOM05D003328 ORTHO05D003722 2.0e-16 90.9 166 40.4
BcaC03g18449 Brassica carinata HOM05D003328 ORTHO05D003722 2.7e-16 90.5 166 40.4
BolC2t06720H Brassica oleracea HOM05D003328 ORTHO05D003722 2.7e-16 90.5 166 40.4
QL02p065219 Quercus lobata HOM05D003328 ORTHO05D003722 2.7e-16 90.5 189 39.7
vmacro18125 Vaccinium macrocarpon HOM05D003328 ORTHO05D003722 2.7e-16 90.5 220 34.1
COL.COLO4_19737 Corchorus olitorius HOM05D003328 ORTHO05D003722 3.5e-16 90.1 209 39.7
Lj4A124T57 Lonicera japonica HOM05D003328 ORTHO05D003722 3.5e-16 90.1 188 37.8
Lalb_Chr02g0158801 Lupinus albus HOM05D003328 ORTHO05D003722 3.5e-16 90.1 200 36.0
TWI60G0197 Tripterygium wilfordii HOM05D003328 ORTHO05D003722 3.5e-16 90.1 185 41.6
Glyma.13G051900 Glycine max HOM05D003328 ORTHO05D003722 4.5e-16 89.7 213 35.2
Thecc.04G107000 Theobroma cacao HOM05D003328 ORTHO05D003722 4.5e-16 89.7 209 38.8
TAR629G1921 Trochodendron aralioides HOM05D003328 ORTHO05D003722 4.5e-16 89.7 144 41.7
Dinv33868 Davidia involucrata HOM05D003328 ORTHO05D003722 5.9e-16 89.4 144 43.8
Thhalv10013771m.g Eutrema salsugineum HOM05D003328 ORTHO05D003722 5.9e-16 89.4 190 36.3
TPR.G15938 Trifolium pratense HOM05D003328 ORTHO05D003722 5.9e-16 89.4 202 35.6
A02p03220 Brassica napus HOM05D003328 ORTHO05D003722 7.8e-16 89.0 194 37.1
Carub.0006s1393 Capsella rubella HOM05D003328 ORTHO05D003722 7.8e-16 89.0 190 37.4
CiPaw.03G082700 Carya illinoinensis HOM05D003328 ORTHO05D003722 7.8e-16 89.0 142 43.7
BraA02t05293Z Brassica rapa HOM05D003328 ORTHO05D003722 1.3e-15 88.2 162 39.5
AT5G15780 Arabidopsis thaliana HOM05D003328 ORTHO05D003722 1.7e-15 87.8 192 37.0
MD16G1014300 Malus domestica HOM05D003328 ORTHO05D003722 1.7e-15 87.8 184 38.6
THA.LOC104820977 Tarenaya hassleriana HOM05D003328 ORTHO05D003722 1.7e-15 87.8 121 47.1
arahy.Tifrunner.gnm1.ann1.6PTW1V Arachis hypogaea HOM05D003328 ORTHO05D003722 2.9e-15 87.0 116 49.1
arahy.Tifrunner.gnm1.ann1.SVI1UB Arachis hypogaea HOM05D003328 ORTHO05D003722 2.9e-15 87.0 116 49.1
Rhsim10G0059400 Rhododendron simsii HOM05D003328 ORTHO05D003722 2.9e-15 87.0 138 44.9
CiPaw.04G052000 Carya illinoinensis HOM05D003328 ORTHO05D003722 3.9e-15 86.7 144 44.4
Oeu031836.1 Olea europaea HOM05D003328 ORTHO05D003722 3.9e-15 86.7 188 38.3
Prupe.3G248700 Prunus persica HOM05D003328 ORTHO05D003722 3.9e-15 86.7 141 43.3
AL6G26620 Arabidopsis lyrata HOM05D003328 ORTHO05D003722 5.0e-15 86.3 146 42.5
Phvul.008G026300 Phaseolus vulgaris HOM05D003328 ORTHO05D003722 5.0e-15 86.3 193 39.9
Rhsim08G0077500 Rhododendron simsii HOM05D003328 ORTHO05D003722 5.0e-15 86.3 148 43.9
Rhsim08G0077700 Rhododendron simsii HOM05D003328 ORTHO05D003722 5.0e-15 86.3 148 43.9
CSS0002115 Camellia sinensis var. sinensis HOM05D003328 ORTHO05D003722 6.6e-15 85.9 220 38.2
CSS0026022 Camellia sinensis var. sinensis HOM05D003328 ORTHO05D003722 6.6e-15 85.9 220 38.2
BcaNung02204 Brassica carinata HOM05D003328 ORTHO05D003722 8.6e-15 85.5 166 38.6
BolC9t58973H Brassica oleracea HOM05D003328 ORTHO05D003722 8.6e-15 85.5 166 39.2
A10p23250 Brassica napus HOM05D003328 ORTHO05D003722 1.1e-14 85.1 120 46.7
vmacro05612 Vaccinium macrocarpon HOM05D003328 ORTHO05D003722 1.1e-14 85.1 190 38.9
Cc07_g04510 Coffea canephora HOM05D003328 ORTHO05D003722 1.5e-14 84.7 198 36.9
MBI16_g07038_MAGBIO Magnolia biondii HOM05D003328 ORTHO05D003722 1.5e-14 84.7 142 43.0
Medtr6g015995 Medicago truncatula HOM05D003328 ORTHO05D003722 1.5e-14 84.7 201 35.3
C09p61320 Brassica napus HOM05D003328 ORTHO05D003722 1.9e-14 84.3 194 36.1
FAN09G2798 Fragaria x ananassa HOM05D003328 ORTHO05D003722 1.9e-14 84.3 192 37.5
Hma1.2p1_0448F.1_g154830 Hydrangea macrophylla HOM05D003328 ORTHO05D003722 1.9e-14 84.3 201 36.3
SalBow1G2513 Salvia bowleyana HOM05D003328 ORTHO05D003722 1.9e-14 84.3 175 36.0
SGA_v2.0_scaffold148G36453 Striga asiatica HOM05D003328 ORTHO05D003722 1.9e-14 84.3 136 40.4
CANSAT64G0201 Cannabis sativa HOM05D003328 ORTHO05D003722 2.5e-14 84.0 200 33.5
Oeu062183.1 Olea europaea HOM05D003328 ORTHO05D003722 3.3e-14 83.6 199 36.2
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 3.3e-14 83.6 188 37.8
BraA10t44393Z Brassica rapa HOM05D003328 ORTHO05D003722 4.3e-14 83.2 152 40.1
RcHm_v2.0_Chr2g0164801 Rosa chinensis HOM05D003328 ORTHO05D003722 4.3e-14 83.2 147 40.8
BcaC04g18938 Brassica carinata HOM05D003328 ORTHO05D003722 5.6e-14 82.8 138 42.8
CARHR197550 Cardamine hirsuta HOM05D003328 ORTHO05D003722 7.3e-14 82.4 125 48.0
Gohir.A07G179500 Gossypium hirsutum HOM05D003328 ORTHO05D003722 7.3e-14 82.4 148 43.9
Lj1g0001231 Lotus japonicus HOM05D003328 ORTHO05D003722 7.3e-14 82.4 213 38.0
Sp6g28340 Schrenkiella parvula HOM05D003328 ORTHO05D003722 7.3e-14 82.4 193 36.8
FAN14G2959 Fragaria x ananassa HOM05D003328 ORTHO05D003722 9.5e-14 82.0 147 40.8
MD09G1075500 Malus domestica HOM05D003328 ORTHO05D003722 9.5e-14 82.0 189 39.2
Actinidia18081 Actinidia chinensis HOM05D003328 ORTHO05D003722 1.2e-13 81.6 151 44.4
Gohir.A07G179300 Gossypium hirsutum HOM05D003328 ORTHO05D003722 1.2e-13 81.6 117 47.0
MD09G1074600 Malus domestica HOM05D003328 ORTHO05D003722 1.2e-13 81.6 120 46.7
Hund13673 Selenicereus undatus HOM05D003328 ORTHO05D003722 1.2e-13 81.6 142 41.5
MBI19_g00148_MAGBIO Magnolia biondii HOM05D003328 ORTHO05D003722 1.6e-13 81.3 222 35.1
Sed0005495 Sechium edule HOM05D003328 ORTHO05D003722 1.6e-13 81.3 197 36.5
Sc11g0008840 Simmondsia chinensis HOM05D003328 ORTHO05D003722 1.6e-13 81.3 143 42.0
Phvul.004G042600 Phaseolus vulgaris HOM05D003328 ORTHO05D003722 2.1e-13 80.9 213 31.9
BraA04t16841Z Brassica rapa HOM05D011162 ORTHO05D013177 3.6e-13 80.1 206 38.3
Duzib138G1918 Durio zibethinus HOM05D003328 ORTHO05D003722 4.7e-13 79.7 171 40.4
FvH4_6g46330 Fragaria vesca HOM05D003328 ORTHO05D003722 4.7e-13 79.7 147 40.1
Glyma.19G035600 Glycine max HOM05D003328 ORTHO05D003722 4.7e-13 79.7 198 35.9
Glyma.19G035700 Glycine max HOM05D003328 ORTHO05D003722 4.7e-13 79.7 199 36.2
A04p11730 Brassica napus HOM05D011162 ORTHO05D013177 6.1e-13 79.3 206 38.3
Duzib138G1365 Durio zibethinus HOM05D003328 ORTHO05D003722 6.1e-13 79.3 163 37.4
Gorai.001G206700 Gossypium raimondii HOM05D003328 ORTHO05D003722 6.1e-13 79.3 117 46.2
Aa31LG11G13800 Aethionema arabicum HOM05D003328 ORTHO05D003722 8.0e-13 79.0 142 38.0
Psat3g203200 Pisum sativum HOM05D003328 ORTHO05D003722 1.0e-12 78.6 199 36.2
FAN05G3920 Fragaria x ananassa HOM05D003328 ORTHO05D003722 1.4e-12 78.2 192 35.4
Nn3g17524 Nelumbo nucifera HOM05D003328 ORTHO05D003722 1.4e-12 78.2 128 44.5
TPR.G23379 Trifolium pratense HOM05D003328 ORTHO05D003722 1.4e-12 78.2 198 35.4
MSTRG.2972 Avicennia marina HOM05D003328 ORTHO05D003722 1.8e-12 77.8 183 35.0
Actinidia26271 Actinidia chinensis HOM05D003328 ORTHO05D003722 2.3e-12 77.4 193 33.7
Aqoxy3G03729 Aquilegia oxysepala HOM05D003328 ORTHO05D003722 2.3e-12 77.4 168 39.3
PGR042G0257 Punica granatum HOM05D003328 ORTHO05D003722 2.3e-12 77.4 170 37.6
FAN05G0575 Fragaria x ananassa HOM05D003328 ORTHO05D003722 3.1e-12 77.0 185 36.2
Medtr7g016950 Medicago truncatula HOM05D003328 ORTHO05D003722 3.1e-12 77.0 189 38.1
VMungo0464G0668 Vigna mungo HOM05D003328 ORTHO05D003722 3.1e-12 77.0 213 32.4
AUR62009478 Chenopodium quinoa HOM05D003328 ORTHO05D003722 4.0e-12 76.6 117 41.9
AUR62023157 Chenopodium quinoa HOM05D003328 ORTHO05D003722 4.0e-12 76.6 145 37.9
FAN09G3792 Fragaria x ananassa HOM05D003328 ORTHO05D003722 4.0e-12 76.6 185 34.6
arahy.Tifrunner.gnm1.ann1.WJSS10 Arachis hypogaea HOM05D003328 ORTHO05D003722 6.8e-12 75.9 189 33.9
Gohir.D07G186200 Gossypium hirsutum HOM05D003328 ORTHO05D003722 6.8e-12 75.9 148 41.2
FAN02G1536 Fragaria x ananassa HOM05D003328 ORTHO05D003722 8.9e-12 75.5 185 35.7
Phvul.004G042700 Phaseolus vulgaris HOM05D003328 ORTHO05D003722 8.9e-12 75.5 166 35.5
Migut.K00883 Erythranthe guttata HOM05D003328 ORTHO05D003722 1.2e-11 75.1 135 40.0
Peaxi162Scf00020g02335 Petunia axillaris HOM05D003328 ORTHO05D003722 1.2e-11 75.1 189 36.5
Actinidia17606 Actinidia chinensis HOM05D003328 ORTHO05D003722 2.0e-11 74.3 145 37.2
Aqoxy1G03531 Aquilegia oxysepala HOM05D003328 ORTHO05D003722 2.0e-11 74.3 149 41.6
arahy.Tifrunner.gnm1.ann1.JWHM9L Arachis hypogaea HOM05D003328 ORTHO05D003722 2.0e-11 74.3 198 32.8
BcaB06g27720 Brassica carinata HOM05D011162 ORTHO05D013177 2.0e-11 74.3 185 36.2
Gohir.D07G186300 Gossypium hirsutum HOM05D003328 ORTHO05D003722 2.0e-11 74.3 201 34.8
CsaV3_4G010050 Cucumis sativus L. HOM05D003328 ORTHO05D003722 2.6e-11 73.9 167 34.1
CsaV3_5G038710 Cucumis sativus L. HOM05D003328 ORTHO05D003722 2.6e-11 73.9 189 33.9
Gorai.001G206900 Gossypium raimondii HOM05D003328 ORTHO05D003722 2.6e-11 73.9 198 33.3
RcHm_v2.0_Chr2g0164841 Rosa chinensis HOM05D003328 ORTHO05D003722 2.6e-11 73.9 165 39.4
BcaC02g08871 Brassica carinata HOM05D011162 ORTHO05D013177 3.4e-11 73.6 182 34.6
C04p45460 Brassica napus HOM05D011162 ORTHO05D013177 3.4e-11 73.6 190 33.2
C04p49670 Brassica napus HOM05D011162 ORTHO05D013177 3.4e-11 73.6 182 34.6
BolC4t26127H Brassica oleracea HOM05D011162 ORTHO05D013177 3.4e-11 73.6 190 33.2
FvH4_6g46340 Fragaria vesca HOM05D003328 ORTHO05D003722 3.4e-11 73.6 184 37.5
FAN14G4737 Fragaria x ananassa HOM05D003328 ORTHO05D003722 3.4e-11 73.6 184 37.5
MD09G1075400 Malus domestica HOM05D003328 ORTHO05D003722 3.4e-11 73.6 147 40.8
VMungo0464G1663 Vigna mungo HOM05D003328 ORTHO05D003722 3.4e-11 73.6 150 38.0
GSVIVG01036543001 Vitis vinifera HOM05D003328 ORTHO05D003722 3.4e-11 73.6 197 35.0
Gohir.A11G159900 Gossypium hirsutum HOM05D003328 ORTHO05D003722 4.4e-11 73.2 164 36.6
Aqoxy3G03730 Aquilegia oxysepala HOM05D003328 ORTHO05D003722 5.8e-11 72.8 166 36.1
Glyma.13G051700 Glycine max HOM05D003328 ORTHO05D003722 5.8e-11 72.8 198 35.4
MD09G1075000 Malus domestica HOM05D003328 ORTHO05D003722 5.8e-11 72.8 120 43.3
PGSC0003DMG400001380 Solanum tuberosum HOM05D003328 ORTHO05D003722 5.8e-11 72.8 185 36.8
ClCG07G016060 Citrullus lanatus HOM05D003328 ORTHO05D003722 7.5e-11 72.4 141 36.9
Solyc02g089250.4 Solanum lycopersicum HOM05D003328 ORTHO05D003722 7.5e-11 72.4 187 35.8
MELO3C018892.2 Cucumis melo HOM05D003328 ORTHO05D003722 9.8e-11 72.0 168 35.1
Gohir.D11G166000 Gossypium hirsutum HOM05D003328 ORTHO05D003722 1.3e-10 71.6 195 34.9
Nitab4.5_0000154g0140 Nicotiana tabacum HOM05D003328 ORTHO05D003722 1.7e-10 71.2 133 38.3
Sopen02g034040 Solanum pennellii HOM05D003328 ORTHO05D003722 1.7e-10 71.2 185 35.7
MELO3C022051.2 Cucumis melo HOM05D003328 ORTHO05D003722 2.2e-10 70.9 141 34.8
DCAR_025456 Daucus carota HOM05D003328 ORTHO05D003722 3.7e-10 70.1 139 38.1
Gorai.007G177000 Gossypium raimondii HOM05D003328 ORTHO05D003722 3.7e-10 70.1 196 34.7
A04p15420 Brassica napus HOM05D011162 ORTHO05D013177 6.4e-10 69.3 184 33.7
CAN.G497.56 Capsicum annuum HOM05D003328 ORTHO05D003722 6.4e-10 69.3 196 34.2
PSO063G5324 Papaver somniferum HOM05D003328 ORTHO05D003722 8.3e-10 68.9 168 38.1
BolC4t26552H Brassica oleracea HOM05D011162 ORTHO05D013177 1.1e-09 68.6 182 34.1
HanXRQChr15g0489341 Helianthus annuus HOM05D003328 ORTHO05D003722 1.9e-09 67.8 153 32.0
MD17G1066000 Malus domestica HOM05D003328 ORTHO05D003722 1.9e-09 67.8 139 37.4
Os10g0205700 Oryza sativa ssp. japonica HOM05D003328 ORTHO05D003722 1.9e-09 67.8 163 33.7
Nitab4.5_0001434g0120 Nicotiana tabacum HOM05D003328 ORTHO05D003722 3.2e-09 67.0 130 37.7
Sp7g03040 Schrenkiella parvula HOM05D011162 ORTHO05D013177 3.2e-09 67.0 184 31.0
BraA04t17179Z Brassica rapa HOM05D011162 ORTHO05D013177 4.1e-09 66.6 184 33.7
ECA232G1221 Erigeron canadensis HOM05D003328 ORTHO05D003722 4.1e-09 66.6 143 34.3
DCAR_011012 Daucus carota HOM05D003328 ORTHO05D003722 7.0e-09 65.9 117 41.9
Lsat_1_v5_gn_4_173421 Lactuca sativa HOM05D003328 ORTHO05D003722 1.2e-08 65.1 117 35.9
PSO782G2223 Papaver somniferum HOM05D003328 ORTHO05D003722 1.2e-08 65.1 174 35.6
Nitab4.5_0009899g0010 Nicotiana tabacum HOM05D003328 ORTHO05D003722 2.0e-08 64.3 191 32.5
Sed0000331 Sechium edule HOM05D003328 ORTHO05D003722 4.6e-08 63.2 162 34.0
HanXRQChr14g0452501 Helianthus annuus HOM05D003328 ORTHO05D003722 7.8e-08 62.4 153 35.9
SEGI_16578 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 1.0e-07 62.0 161 32.9
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 1.7e-07 61.2 119 34.5
Phvul.004G042800 Phaseolus vulgaris HOM05D003328 ORTHO05D003722 1.7e-07 61.2 181 32.0
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 1.7e-07 61.2 204 32.4
ECA238G2003 Erigeron canadensis HOM05D003328 ORTHO05D003722 2.3e-07 60.8 123 39.0
CARHR263720 Cardamine hirsuta HOM05D011162 ORTHO05D013177 3.9e-07 60.1 209 31.6
ClCG11G004980 Citrullus lanatus HOM05D003328 ORTHO05D003722 1.5e-06 58.2 189 32.3
SEGI_33280 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 2.5e-06 57.4 168 32.7
Nitab4.5_0001339g0060 Nicotiana tabacum HOM05D003328 ORTHO05D003722 4.3e-06 56.6 150 34.0


User provided reference genes

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