Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 1.4e-162 576.2 287 100.0
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 3.7e-144 515.0 287 90.2
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 3.3e-116 422.2 289 74.7
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 2.8e-115 419.1 290 74.5
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 4.7e-115 418.3 290 74.8
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 5.4e-111 404.8 289 73.7
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 9.2e-111 404.1 290 72.8
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 2.7e-110 402.5 290 72.4
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 2.7e-110 402.5 255 76.1
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 3.5e-110 402.1 234 84.6
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 7.8e-110 401.0 291 72.9
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 8.6e-109 397.5 296 72.0
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 2.5e-108 396.0 287 72.1
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 9.5e-108 394.0 255 76.9
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 6.2e-107 391.3 235 77.9
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 2.4e-106 389.4 291 70.8
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 5.2e-106 388.3 231 80.1
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 6.8e-106 387.9 291 67.7
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.2e-104 382.9 291 66.0
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 2.2e-104 382.9 289 67.8
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 2.2e-104 382.9 237 75.5
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 2.2e-104 382.9 268 70.5
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 3.8e-104 382.1 287 68.3
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 4.9e-104 381.7 260 71.9
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 6.4e-104 381.3 260 71.5
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 1.1e-103 380.6 273 71.4
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 1.9e-103 379.8 260 71.2
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 1.9e-103 379.8 260 71.2
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 2.4e-103 379.4 289 66.4
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 3.2e-103 379.0 287 66.6
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 3.2e-103 379.0 287 66.6
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 4.2e-103 378.6 301 64.8
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 5.4e-103 378.3 289 66.8
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 9.2e-103 377.5 294 66.7
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 9.2e-103 377.5 222 79.7
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 2.1e-102 376.3 286 66.4
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 2.7e-102 375.9 231 76.2
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 7.8e-102 374.4 284 67.3
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.0e-101 374.0 291 65.3
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 5.1e-101 371.7 292 64.7
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 6.6e-101 371.3 231 76.6
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 8.7e-101 370.9 291 64.6
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 8.7e-101 370.9 291 64.6
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 1.1e-100 370.5 287 64.8
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 1.1e-100 370.5 222 78.4
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 1.5e-100 370.2 288 64.2
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 4.3e-100 368.6 291 63.9
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 9.6e-100 367.5 270 71.1
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 2.1e-99 366.3 285 67.4
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 2.1e-99 366.3 286 64.7
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 2.8e-99 365.9 222 77.5
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 8.1e-99 364.4 296 64.5
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 1.1e-98 364.0 238 73.1
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 1.8e-98 363.2 251 71.3
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 1.8e-98 363.2 238 72.7
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 2.4e-98 362.8 287 63.8
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 4.0e-98 362.1 288 64.6
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 4.0e-98 362.1 235 74.9
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 1.2e-97 360.5 235 72.3
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 1.2e-97 360.5 283 64.7
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 1.2e-97 360.5 235 72.8
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 1.5e-97 360.1 264 67.4
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 2.0e-97 359.8 234 73.1
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 3.4e-97 359.0 270 70.0
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 5.8e-97 358.2 290 63.8
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 9.9e-97 357.5 285 66.0
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 1.7e-96 356.7 258 67.8
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 2.2e-96 356.3 250 69.2
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 3.8e-96 355.5 234 70.9
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 4.9e-96 355.1 245 70.2
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 3.2e-95 352.4 229 71.2
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 4.2e-95 352.1 222 73.9
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 5.4e-95 351.7 261 67.0
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 5.4e-95 351.7 272 63.6
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 9.3e-95 350.9 244 71.7
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 2.1e-94 349.7 288 62.8
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 4.6e-94 348.6 262 66.0
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 4.6e-94 348.6 260 65.8
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 1.0e-93 347.4 240 67.5
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 2.3e-93 346.3 287 61.0
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 3.0e-93 345.9 276 63.8
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 3.0e-93 345.9 282 64.2
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 6.6e-93 344.7 221 71.5
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 1.5e-92 343.6 260 65.4
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 5.6e-92 341.7 245 67.3
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 9.6e-92 340.9 293 61.1
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 3.1e-90 335.9 287 61.7
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 1.2e-89 334.0 284 60.6
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 2.2e-88 329.7 295 57.3
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 2.7e-86 322.8 202 73.3
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 3.5e-86 322.4 247 66.8
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 3.3e-84 315.8 260 61.9
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 6.2e-83 311.6 253 59.7
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 1.8e-82 310.1 231 64.5
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 2.6e-81 306.2 231 65.4
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 2.6e-81 306.2 180 82.8
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 5.8e-81 305.1 246 62.2
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 9.9e-81 304.3 242 62.0
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 2.2e-80 303.1 230 62.6
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 3.8e-80 302.4 275 57.8
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 6.4e-80 301.6 222 64.9
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 5.5e-79 298.5 184 76.6
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 1.2e-78 297.4 247 61.9
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 1.2e-78 297.4 251 58.2
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 6.7e-77 291.6 222 64.4
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 3.3e-76 289.3 238 60.5
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 3.3e-76 289.3 233 62.2
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 4.3e-76 288.9 229 60.7
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 1.6e-75 287.0 184 74.5
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 3.7e-75 285.8 183 74.3
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 6.2e-75 285.0 176 77.8
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 2.2e-67 260.0 238 60.1
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 4.1e-66 255.8 164 73.8
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 7.9e-62 241.5 193 62.2
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 1.7e-56 223.8 234 50.4
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 1.4e-53 214.2 265 43.4
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 1.2e-49 201.1 310 40.0
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 8.0e-46 188.3 127 73.2
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 2.3e-45 186.8 296 38.9
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 6.7e-45 185.3 128 66.4
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 6.7e-45 185.3 288 43.1
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 1.7e-43 180.6 147 61.2
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 2.0e-41 173.7 113 74.3
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 1.6e-38 164.1 111 70.3
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 1.7e-32 144.1 116 61.2
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 1.4e-29 134.4 171 50.3
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 2.6e-28 130.2 78 80.8
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 4.4e-28 129.4 287 31.4
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 6.3e-27 125.6 79 75.9
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 5.4e-26 122.5 84 70.2
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 1.2e-22 111.3 82 65.9
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 1.4e-18 97.8 56 78.6
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 5.6e-15 85.9 78 53.8
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 1.5e-12 77.8 81 49.4


User provided reference genes

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