Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104805110 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 1.4e-50 202.6 101 100.0
THA.LOC104824108 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 4.0e-45 184.5 101 92.1
BcaC06g34084 Brassica carinata HOM05D005547 ORTHO05D006887 7.1e-42 173.7 103 86.4
C07p32870 Brassica napus HOM05D005547 ORTHO05D006887 7.1e-42 173.7 103 86.4
BolC7t43802H Brassica oleracea HOM05D005547 ORTHO05D006887 7.1e-42 173.7 103 86.4
BcaC04g21537 Brassica carinata HOM05D005547 ORTHO05D006887 9.3e-42 173.3 103 86.4
A09p23740 Brassica napus HOM05D005547 ORTHO05D006887 9.3e-42 173.3 103 86.4
C09p30580 Brassica napus HOM05D005547 ORTHO05D006887 9.3e-42 173.3 103 86.4
BolC9t55922H Brassica oleracea HOM05D005547 ORTHO05D006887 9.3e-42 173.3 103 86.4
BraA09t37975Z Brassica rapa HOM05D005547 ORTHO05D006887 9.3e-42 173.3 103 86.4
Thhalv10005178m.g Eutrema salsugineum HOM05D005547 ORTHO05D006887 9.3e-42 173.3 103 86.4
Sp2g13460 Schrenkiella parvula HOM05D005547 ORTHO05D006887 9.3e-42 173.3 103 86.4
BcaC06g31254 Brassica carinata HOM05D005547 ORTHO05D006887 1.2e-41 172.9 103 86.4
BcaC06g31255 Brassica carinata HOM05D005547 ORTHO05D006887 1.2e-41 172.9 103 86.4
A06p43870 Brassica napus HOM05D005547 ORTHO05D006887 2.1e-41 172.2 103 85.4
BraA06t27263Z Brassica rapa HOM05D005547 ORTHO05D006887 2.1e-41 172.2 103 85.4
BcaB07g30360 Brassica carinata HOM05D005547 ORTHO05D006887 7.9e-41 170.2 104 83.7
Cpa.g.sc2.79 Carica papaya HOM05D005547 ORTHO05D006887 3.0e-40 168.3 102 84.3
A02p32590 Brassica napus HOM05D005547 ORTHO05D006887 5.1e-40 167.5 103 83.5
CAN.G458.10 Capsicum annuum HOM05D005547 ORTHO05D006887 6.7e-40 167.2 101 80.2
Manes.17G091700 Manihot esculenta HOM05D005547 ORTHO05D006887 8.7e-40 166.8 103 82.5
CANSAT78G0133 Cannabis sativa HOM05D005547 ORTHO05D006887 1.1e-39 166.4 101 81.2
Manes.15G140700 Manihot esculenta HOM05D005547 ORTHO05D006887 1.5e-39 166.0 103 81.6
Aa31LG2G7900 Aethionema arabicum HOM05D000012 ORTHO05D000567 1.9e-39 165.6 92 90.2
Carub.0005s0107 Capsella rubella HOM05D005547 ORTHO05D006887 1.9e-39 165.6 103 82.5
PSO063G0668 Papaver somniferum HOM05D005547 ORTHO05D006887 2.5e-39 165.2 101 80.2
CARHR144680 Cardamine hirsuta HOM05D005547 ORTHO05D006887 3.3e-39 164.9 103 82.5
Solyc04g008490.2 Solanum lycopersicum HOM05D005547 ORTHO05D006887 3.3e-39 164.9 101 80.2
Sopen04g003640 Solanum pennellii HOM05D005547 ORTHO05D006887 3.3e-39 164.9 101 80.2
ClCG11G000640 Citrullus lanatus HOM05D005547 ORTHO05D006887 5.7e-39 164.1 101 82.2
PGR142G0372 Punica granatum HOM05D005547 ORTHO05D006887 5.7e-39 164.1 101 82.2
Rhsim09G0081900 Rhododendron simsii HOM05D005547 ORTHO05D006887 5.7e-39 164.1 105 81.0
Nitab4.5_0003889g0030 Nicotiana tabacum HOM05D005547 ORTHO05D006887 7.4e-39 163.7 101 82.2
unitig_699.g19647 Utricularia gibba HOM05D005547 ORTHO05D006887 7.4e-39 163.7 101 79.2
Ciclev10017277m.g Citrus clementina HOM05D005547 ORTHO05D006887 9.6e-39 163.3 104 79.8
Nn8g41124 Nelumbo nucifera HOM05D005547 ORTHO05D006887 9.6e-39 163.3 101 80.2
TWI53G0286 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 9.6e-39 163.3 104 78.8
PSO782G2712 Papaver somniferum HOM05D005547 ORTHO05D006887 1.3e-38 162.9 101 78.2
MSTRG.13653 Avicennia marina HOM05D005547 ORTHO05D006887 2.1e-38 162.2 101 80.2
SGA_v2.0_scaffold65G22157 Striga asiatica HOM05D005547 ORTHO05D006887 2.1e-38 162.2 101 79.2
Atru.chr11.1034 Acer truncatum HOM05D005547 ORTHO05D006887 2.8e-38 161.8 102 80.4
BcaB07g30717 Brassica carinata HOM05D005547 ORTHO05D006887 2.8e-38 161.8 93 84.9
BcaB07g30718 Brassica carinata HOM05D005547 ORTHO05D006887 2.8e-38 161.8 93 84.9
Gohir.A03G114100 Gossypium hirsutum HOM05D005547 ORTHO05D006887 4.8e-38 161.0 103 81.6
Oeu024849.1 Olea europaea HOM05D005547 ORTHO05D006887 4.8e-38 161.0 103 79.6
Ah.03g147190 Amaranthus hybridus HOM05D005547 ORTHO05D006887 6.3e-38 160.6 101 79.2
AL5G11260 Arabidopsis lyrata HOM05D005547 ORTHO05D006887 1.1e-37 159.8 104 78.8
Duzib268G1003 Durio zibethinus HOM05D005547 ORTHO05D006887 1.1e-37 159.8 103 79.6
Gorai.005G154900 Gossypium raimondii HOM05D005547 ORTHO05D006887 1.1e-37 159.8 103 81.6
Gorai.005G155000 Gossypium raimondii HOM05D005547 ORTHO05D006887 1.1e-37 159.8 103 81.6
Nitab4.5_0000129g0490 Nicotiana tabacum HOM05D005547 ORTHO05D006887 1.1e-37 159.8 105 77.1
Nitab4.5_0001091g0130 Nicotiana tabacum HOM05D005547 ORTHO05D006887 1.4e-37 159.5 105 77.1
Duzib248G0639 Durio zibethinus HOM05D005547 ORTHO05D006887 1.8e-37 159.1 103 79.6
Gohir.D02G138400 Gossypium hirsutum HOM05D005547 ORTHO05D006887 1.8e-37 159.1 103 81.6
Potri.010G099900 Populus trichocarpa HOM05D005547 ORTHO05D006887 1.8e-37 159.1 102 77.5
ATR0807G170 Amborella trichopoda HOM05D005547 ORTHO05D006887 2.4e-37 158.7 101 78.2
Gohir.D02G138500 Gossypium hirsutum HOM05D005547 ORTHO05D006887 2.4e-37 158.7 103 80.6
MBI06_g29243_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 2.4e-37 158.7 101 79.2
Potri.008G141900 Populus trichocarpa HOM05D005547 ORTHO05D006887 2.4e-37 158.7 102 77.5
Sabra08G0107500 Salix brachista HOM05D005547 ORTHO05D006887 2.4e-37 158.7 101 76.2
TAR295G0002 Trochodendron aralioides HOM05D005547 ORTHO05D006887 2.4e-37 158.7 103 78.6
TAR622G1295 Trochodendron aralioides HOM05D005547 ORTHO05D006887 2.4e-37 158.7 103 78.6
Duzib251G0939 Durio zibethinus HOM05D005547 ORTHO05D006887 3.1e-37 158.3 103 79.6
Thecc.02G300400 Theobroma cacao HOM05D005547 ORTHO05D006887 3.1e-37 158.3 103 79.6
Sc03g0005980 Simmondsia chinensis HOM05D005547 ORTHO05D006887 4.1e-37 157.9 101 81.2
COL.COLO4_27546 Corchorus olitorius HOM05D005547 ORTHO05D006887 5.3e-37 157.5 101 80.2
QL03p040577 Quercus lobata HOM05D005547 ORTHO05D006887 6.9e-37 157.1 101 78.2
QL03p040948 Quercus lobata HOM05D005547 ORTHO05D006887 6.9e-37 157.1 101 78.2
TWI77G0905 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 6.9e-37 157.1 104 76.0
Haze_11478 Corylus avellana HOM05D005547 ORTHO05D006887 9.0e-37 156.8 101 80.2
MD13G1013300 Malus domestica HOM05D005547 ORTHO05D006887 9.0e-37 156.8 103 77.7
Prupe.1G340400 Prunus persica HOM05D005547 ORTHO05D006887 9.0e-37 156.8 103 77.7
AT2G02050 Arabidopsis thaliana HOM05D005547 ORTHO05D006887 1.2e-36 156.4 104 77.9
MSTRG.2096 Avicennia marina HOM05D005547 ORTHO05D006887 1.2e-36 156.4 101 76.2
CSS0022085 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 1.2e-36 156.4 101 78.2
CSS0041328 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 1.2e-36 156.4 101 78.2
MELO3C022540.2 Cucumis melo HOM05D005547 ORTHO05D006887 1.5e-36 156.0 101 79.2
MD16G1010200 Malus domestica HOM05D005547 ORTHO05D006887 1.5e-36 156.0 103 76.7
TWI77G0558 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 1.5e-36 156.0 104 75.0
Lalb_Chr02g0143381 Lupinus albus HOM05D005547 ORTHO05D006887 2.0e-36 155.6 103 77.7
Sabra10G0072400 Salix brachista HOM05D005547 ORTHO05D006887 2.0e-36 155.6 102 77.5
Cfa015074 Carpinus fangiana HOM05D005547 ORTHO05D006887 2.6e-36 155.2 103 80.6
CiPaw.06G057000 Carya illinoinensis HOM05D005547 ORTHO05D006887 3.4e-36 154.8 102 78.4
HanXRQChr12g0365891 Helianthus annuus HOM05D005547 ORTHO05D006887 3.4e-36 154.8 101 76.2
MBI06_g19635_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 4.5e-36 154.5 97 79.4
Eucgr.B02628 Eucalyptus grandis HOM05D005547 ORTHO05D006887 5.9e-36 154.1 107 75.7
Lalb_Chr21g0306901 Lupinus albus HOM05D005547 ORTHO05D006887 5.9e-36 154.1 103 75.7
Ca_11205_v3 Cicer arietinum L. HOM05D005547 ORTHO05D006887 7.6e-36 153.7 103 78.6
Medtr1g112480 Medicago truncatula HOM05D005547 ORTHO05D006887 1.3e-35 152.9 106 74.5
Lsat_1_v5_gn_5_36641 Lactuca sativa HOM05D005547 ORTHO05D006887 1.7e-35 152.5 101 74.3
Migut.D01210 Erythranthe guttata HOM05D005547 ORTHO05D006887 3.8e-35 151.4 105 73.3
SHI04242 Sapria himalayana HOM05D005547 ORTHO05D006887 3.8e-35 151.4 100 75.0
Sed0015045 Sechium edule HOM05D005547 ORTHO05D006887 3.8e-35 151.4 101 76.2
Psat6g231800 Pisum sativum HOM05D005547 ORTHO05D006887 5.0e-35 151.0 104 76.0
Sed0021722 Sechium edule HOM05D005547 ORTHO05D006887 5.0e-35 151.0 101 75.2
Gohir.A03G114000 Gossypium hirsutum HOM05D005547 ORTHO05D006887 6.5e-35 150.6 103 77.7
Phvul.007G019800 Phaseolus vulgaris HOM05D005547 ORTHO05D006887 8.4e-35 150.2 101 77.2
TPR.G2488 Trifolium pratense HOM05D005547 ORTHO05D006887 1.1e-34 149.8 107 74.8
Peaxi162Scf00025g00059 Petunia axillaris HOM05D005547 ORTHO05D006887 2.5e-34 148.7 82 86.6
Nitab4.5_0000944g0080 Nicotiana tabacum HOM05D005547 ORTHO05D006887 4.2e-34 147.9 73 95.9
Glyma.20G108500 Glycine max HOM05D005547 ORTHO05D006887 7.2e-34 147.1 87 81.6
DCAR_002637 Daucus carota HOM05D005547 ORTHO05D006887 1.2e-33 146.4 100 75.0
FAN07G0567 Fragaria x ananassa HOM05D005547 ORTHO05D006887 3.5e-33 144.8 106 69.8
FAN17G0411 Fragaria x ananassa HOM05D005547 ORTHO05D006887 3.5e-33 144.8 106 69.8
Lj5g0000051 Lotus japonicus HOM05D005547 ORTHO05D006887 3.5e-33 144.8 101 76.2
RcHm_v2.0_Chr4g0445601 Rosa chinensis HOM05D005547 ORTHO05D006887 3.5e-33 144.8 103 70.9
FvH4_4g35970 Fragaria vesca HOM05D005547 ORTHO05D006887 4.6e-33 144.4 106 69.8
FAN12G1717 Fragaria x ananassa HOM05D005547 ORTHO05D006887 4.6e-33 144.4 106 69.8
FAN22G0273 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.0e-32 143.3 106 68.9
Hma1.2p1_0068F.1_g037220 Hydrangea macrophylla HOM05D005547 ORTHO05D006887 1.0e-32 143.3 101 73.3
SalBow2G0745 Salvia bowleyana HOM05D005547 ORTHO05D006887 1.8e-32 142.5 92 77.2
AUR62003480 Chenopodium quinoa HOM05D005547 ORTHO05D006887 2.3e-32 142.1 92 77.2
HPP92_022540 Vanilla planifolia HOM05D005547 ORTHO05D006887 3.9e-32 141.4 91 78.0
Ah.02g120230 Amaranthus hybridus HOM05D005547 ORTHO05D006887 8.7e-32 140.2 101 71.3
AUR62017789 Chenopodium quinoa HOM05D005547 ORTHO05D006887 1.1e-31 139.8 92 76.1
Zm00001eb002320 Zea mays HOM05D005547 ORTHO05D006887 4.3e-31 137.9 85 80.0
Os03g0129900 Oryza sativa ssp. japonica HOM05D005547 ORTHO05D006887 5.7e-31 137.5 95 72.6
Cc11_g05010 Coffea canephora HOM05D005547 ORTHO05D006887 1.8e-29 132.5 69 88.4
ECA233G2357 Erigeron canadensis HOM05D005547 ORTHO05D006887 9.0e-29 130.2 74 79.7
MD17G1273300 Malus domestica HOM05D005547 ORTHO05D006887 2.0e-28 129.0 73 82.2
arahy.Tifrunner.gnm1.ann1.VES97W Arachis hypogaea HOM05D005547 ORTHO05D006887 1.3e-27 126.3 87 72.4
Haze_10731 Corylus avellana HOM05D005547 ORTHO05D006887 5.7e-23 110.9 71 74.6
Mapoly0058s0109 Marchantia polymorpha HOM05D005547 ORTHO05D006887 1.7e-22 109.4 70 70.0
Pp3c14_25130 Physcomitrium patens HOM05D005547 ORTHO05D006887 4.8e-22 107.8 73 67.1
Pp3c10_11190 Physcomitrium patens HOM05D005547 ORTHO05D006887 8.2e-22 107.1 74 66.2
C02p50170 Brassica napus HOM05D005547 ORTHO05D006887 1.2e-20 103.2 68 76.5
BolC2t11096H Brassica oleracea HOM05D005547 ORTHO05D006887 1.2e-20 103.2 68 76.5
BcaC03g17109 Brassica carinata HOM05D005547 ORTHO05D006887 6.5e-19 97.4 89 61.8
GSVIVG01000609001 Vitis vinifera HOM05D005547 ORTHO05D006887 8.5e-19 97.1 56 82.1
arahy.Tifrunner.gnm1.ann1.FEK9G3 Arachis hypogaea HOM05D005547 ORTHO05D006887 1.1e-18 96.7 64 65.6
CBR_g4786 Chara braunii HOM05D005547 ORTHO05D006887 4.7e-17 91.3 70 57.1
MCO06G054 Micromonas commoda HOM05D005547 ORTHO05D006887 2.3e-16 89.0 55 67.3
SMO356G0087 Selaginella moellendorffii HOM05D005547 ORTHO05D006887 1.1e-15 86.7 65 56.9
Gorai.002G169600 Gossypium raimondii HOM05D005547 ORTHO05D006887 4.4e-15 84.7 103 52.4
Glyma.14G132200 Glycine max HOM05D005547 ORTHO05D006887 9.1e-13 77.0 102 51.0
PRCOL_00006370 Prasinoderma coloniale HOM05D005547 ORTHO05D006887 1.1e-07 60.1 67 46.3


User provided reference genes

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