Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 2.9e-105 385.2 189 100.0
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 1.9e-96 355.9 185 91.4
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 2.5e-96 355.5 183 92.3
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 3.2e-96 355.1 183 91.8
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 5.5e-96 354.4 183 91.8
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 5.5e-96 354.4 183 91.8
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 5.5e-96 354.4 183 91.8
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 7.2e-96 354.0 183 91.8
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 6.1e-95 350.9 183 90.7
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 8.0e-95 350.5 183 90.7
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 1.0e-94 350.1 185 87.6
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 1.4e-94 349.7 185 88.1
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 2.3e-94 349.0 183 89.1
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 2.3e-94 349.0 183 89.1
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 2.3e-94 349.0 183 89.1
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 4.0e-94 348.2 183 89.6
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 5.2e-94 347.8 183 88.5
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 6.7e-94 347.4 183 88.5
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 2.6e-93 345.5 185 85.9
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 3.3e-93 345.1 185 85.9
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 3.3e-93 345.1 183 88.0
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 3.3e-93 345.1 183 89.1
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 3.3e-93 345.1 183 89.1
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 1.3e-92 343.2 185 85.4
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.7e-92 342.8 185 85.9
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 1.7e-92 342.8 185 86.5
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 2.2e-92 342.4 185 85.4
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 2.2e-92 342.4 185 86.5
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 8.2e-92 340.5 185 85.4
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 1.8e-91 339.3 185 85.4
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.8e-91 339.3 185 85.4
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 2.4e-91 339.0 185 83.2
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 2.4e-91 339.0 185 83.2
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 3.1e-91 338.6 185 84.3
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 3.1e-91 338.6 185 83.8
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 4.1e-91 338.2 186 82.8
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 4.1e-91 338.2 185 84.3
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 5.3e-91 337.8 185 84.3
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 5.3e-91 337.8 185 83.8
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 9.1e-91 337.0 185 84.3
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 9.1e-91 337.0 187 84.5
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 9.1e-91 337.0 184 84.8
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 9.1e-91 337.0 185 83.8
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 1.2e-90 336.7 185 84.3
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 1.2e-90 336.7 184 84.8
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 1.2e-90 336.7 187 85.0
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 1.2e-90 336.7 185 83.8
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 1.6e-90 336.3 185 83.8
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 1.6e-90 336.3 185 84.9
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 2.7e-90 335.5 185 84.9
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 3.5e-90 335.1 185 83.8
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 3.5e-90 335.1 185 84.9
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 3.5e-90 335.1 185 84.9
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 5.9e-90 334.3 187 83.4
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 7.7e-90 334.0 185 83.2
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 1.0e-89 333.6 184 83.2
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 1.3e-89 333.2 185 81.6
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 2.2e-89 332.4 185 83.8
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 2.9e-89 332.0 184 83.7
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 3.8e-89 331.6 185 83.8
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 3.8e-89 331.6 185 82.2
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 5.0e-89 331.3 185 82.7
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 6.5e-89 330.9 184 83.7
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 1.1e-88 330.1 187 83.4
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 1.1e-88 330.1 184 82.1
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 1.5e-88 329.7 182 83.0
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 1.5e-88 329.7 185 83.2
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 1.5e-88 329.7 185 83.8
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.5e-88 329.7 184 83.2
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.5e-88 328.9 185 80.5
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 2.5e-88 328.9 185 81.6
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 4.2e-88 328.2 184 82.1
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 4.2e-88 328.2 184 82.1
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 5.5e-88 327.8 184 82.1
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.1e-87 325.9 185 80.5
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 2.1e-87 325.9 185 82.7
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 2.7e-87 325.5 185 80.5
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 2.7e-87 325.5 183 84.2
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 2.7e-87 325.5 184 82.1
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 3.6e-87 325.1 186 80.1
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 3.6e-87 325.1 184 79.9
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 6.1e-87 324.3 185 80.5
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 6.1e-87 324.3 184 82.6
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 8.0e-87 323.9 178 83.7
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 8.0e-87 323.9 181 81.2
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 1.0e-86 323.6 184 82.1
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.0e-86 323.6 184 82.1
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.8e-86 322.8 181 81.2
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.8e-86 322.8 182 79.7
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 1.8e-86 322.8 182 79.7
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 3.0e-86 322.0 184 79.9
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 8.8e-86 320.5 184 79.3
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 8.8e-86 320.5 185 78.9
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 2.0e-85 319.3 184 81.0
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 2.6e-85 318.9 182 80.2
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 4.4e-85 318.2 185 78.9
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 5.7e-85 317.8 184 81.5
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 9.8e-85 317.0 184 77.7
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 1.7e-84 316.2 185 80.0
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 4.8e-84 314.7 172 86.0
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 1.4e-83 313.2 186 77.4
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 3.1e-83 312.0 185 78.4
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 7.0e-83 310.8 185 77.8
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 3.5e-82 308.5 186 77.4
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 5.9e-82 307.8 185 73.0
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 6.6e-81 304.3 186 76.3
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 5.5e-80 301.2 183 79.8
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 8.0e-79 297.4 185 74.1
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 2.3e-78 295.8 186 72.6
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 4.0e-78 295.0 185 72.4
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 3.4e-77 292.0 185 72.4
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 4.4e-77 291.6 185 71.9
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 2.8e-76 288.9 173 76.3
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 2.8e-76 288.9 185 70.8
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 8.3e-76 287.3 185 69.7
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 1.4e-75 286.6 186 70.4
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 1.8e-75 286.2 185 69.7
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 3.1e-75 285.4 185 69.7
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 4.5e-74 281.6 185 69.7
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 3.6e-71 271.9 185 67.0
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 7.3e-64 247.7 183 55.7
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 7.8e-58 227.6 181 55.2
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 4.3e-56 221.9 187 54.5
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 9.5e-56 220.7 177 52.5
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 4.7e-55 218.4 183 51.9
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 6.2e-55 218.0 172 62.8
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 5.8e-53 211.5 183 51.4
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 1.8e-46 189.9 151 57.0
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 4.2e-43 178.7 180 50.6
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 5.3e-38 161.8 89 86.5
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 1.1e-32 144.1 194 41.2
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 4.6e-26 122.1 88 64.8
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 5.6e-24 115.2 157 35.0
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 3.2e-19 99.4 54 81.5
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 3.3e-08 62.8 88 37.5


User provided reference genes

Program Settings