Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.7e-247 859.0 466 100.0
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 2.3e-159 566.2 467 69.0
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 2.6e-131 473.0 445 62.7
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 1.6e-128 463.8 448 61.6
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 2.7e-128 463.0 480 57.9
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 1.4e-124 450.7 473 59.0
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 1.4e-124 450.7 478 58.8
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 1.9e-121 440.3 458 58.7
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 8.8e-119 431.4 468 56.4
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 1.1e-110 404.4 454 57.9
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 5.7e-110 402.1 447 52.6
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 8.2e-109 398.3 449 55.9
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 4.1e-108 396.0 472 55.7
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 7.0e-108 395.2 449 58.8
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 4.5e-107 392.5 447 52.8
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.1e-105 387.9 450 53.1
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 8.0e-104 381.7 471 54.6
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 8.8e-103 378.3 451 52.8
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 1.1e-102 377.9 470 52.1
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 1.5e-102 377.5 448 52.9
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 5.7e-102 375.6 453 51.7
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 1.7e-101 374.0 455 53.0
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 2.2e-101 373.6 450 51.3
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 3.1e-100 369.8 451 51.0
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 5.9e-99 365.5 397 57.9
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 2.9e-98 363.2 492 48.2
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 3.8e-98 362.8 446 51.8
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 5.0e-98 362.5 445 51.7
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 1.1e-97 361.3 469 49.7
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 3.2e-97 359.8 409 54.0
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 4.2e-97 359.4 448 50.0
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 2.7e-96 356.7 445 51.2
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 4.7e-96 355.9 387 55.3
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 6.1e-96 355.5 446 49.6
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 1.0e-95 354.8 452 51.1
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 2.3e-95 353.6 473 49.9
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 7.5e-94 348.6 414 53.6
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 3.7e-93 346.3 452 51.1
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 4.1e-92 342.8 440 48.6
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 4.1e-92 342.8 455 50.1
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 2.0e-91 340.5 397 55.7
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 2.7e-91 340.1 448 50.2
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 4.5e-91 339.3 446 48.7
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 5.0e-90 335.9 456 48.2
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 8.5e-90 335.1 414 52.7
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 3.2e-89 333.2 485 47.4
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 4.2e-89 332.8 454 49.3
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 1.6e-88 330.9 452 49.1
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 3.6e-88 329.7 449 47.4
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 2.6e-86 323.6 433 49.7
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 1.7e-85 320.9 413 49.2
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 1.7e-85 320.9 449 46.5
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 2.4e-84 317.0 467 45.2
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 2.4e-84 317.0 455 45.5
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 1.3e-82 311.2 436 47.2
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 2.3e-82 310.5 444 45.9
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 2.3e-82 310.5 451 45.9
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 6.6e-82 308.9 477 48.8
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 6.6e-82 308.9 477 48.8
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 9.5e-81 305.1 308 56.8
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 9.5e-81 305.1 449 46.3
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.1e-80 303.9 420 47.1
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 2.1e-80 303.9 441 45.6
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 2.1e-80 303.9 374 50.0
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 6.1e-80 302.4 419 46.5
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 6.1e-80 302.4 439 47.6
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.0e-79 301.6 419 45.8
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 5.2e-79 299.3 459 45.1
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 8.9e-79 298.5 449 46.8
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 2.0e-78 297.4 384 51.0
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 5.7e-78 295.8 445 45.8
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 7.5e-78 295.4 448 43.3
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 7.5e-78 295.4 477 46.5
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 6.4e-77 292.4 453 45.5
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 1.4e-76 291.2 449 46.3
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 9.2e-76 288.5 447 44.3
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 2.0e-75 287.3 501 42.1
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 1.0e-74 285.0 441 45.1
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 5.0e-74 282.7 463 42.3
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 6.6e-74 282.3 465 43.4
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 8.6e-74 282.0 440 44.8
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 5.6e-73 279.3 450 44.9
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 8.0e-72 275.4 427 45.2
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.0e-71 275.0 454 43.2
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.0e-71 275.0 454 43.2
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 8.9e-71 271.9 444 42.3
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 9.8e-70 268.5 448 44.2
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 8.3e-69 265.4 443 44.2
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 5.4e-68 262.7 455 42.2
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 7.0e-68 262.3 429 43.4
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 9.2e-68 261.9 449 43.0
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.2e-67 261.5 364 45.9
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 1.6e-67 261.2 440 42.7
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 7.8e-67 258.8 435 42.3
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 3.9e-66 256.5 436 42.4
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 9.5e-65 251.9 436 43.6
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 2.1e-64 250.8 438 43.2
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 2.0e-62 244.2 457 39.8
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 1.1e-60 238.4 446 41.3
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 3.2e-60 236.9 407 41.5
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 1.7e-58 231.1 347 46.4
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 6.6e-58 229.2 429 40.1
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 1.1e-57 228.4 432 38.7
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.8e-56 223.8 463 37.1
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 3.6e-56 223.4 273 47.6
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.2e-52 210.3 424 36.3
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 7.1e-52 209.1 350 43.4
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 2.1e-51 207.6 309 44.0
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 7.3e-49 199.1 202 55.0
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 1.2e-48 198.4 436 36.0
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 1.4e-47 194.9 361 41.0
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 8.9e-47 192.2 223 51.1
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 2.6e-46 190.7 255 49.0
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.3e-45 188.3 376 38.8
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 2.7e-43 180.6 290 43.4
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 3.5e-43 180.3 469 37.7
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 6.6e-42 176.0 312 44.2
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 4.2e-36 156.8 170 51.2
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 5.4e-36 156.4 297 40.4
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 7.1e-36 156.0 367 37.9
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 1.6e-35 154.8 296 37.8
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 5.6e-33 146.4 136 58.1
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 2.8e-32 144.1 251 40.6
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 4.8e-32 143.3 466 31.5
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 6.2e-32 142.9 154 50.6
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 8.1e-32 142.5 263 35.7
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 9.3e-28 129.0 222 43.2
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 3.3e-25 120.6 234 39.3
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 3.3e-25 120.6 162 47.5
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 2.7e-19 100.9 165 44.2
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.3e-18 98.6 164 43.9
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.1e-17 95.5 229 35.4
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 6.5e-13 79.7 82 57.3
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 4.6e-11 73.6 92 46.7
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 5.1e-10 70.1 118 36.4
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.5e-09 68.6 92 48.9
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.9e-09 68.2 102 42.2
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 1.3e-08 65.5 103 41.7
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 3.1e-07 60.8 88 45.5
MELO3C032928.2 Cucumis melo HOM05D006039 ORTHO05D006797 4.5e-06 57.0 64 46.9


User provided reference genes

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