Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 3.8e-227 791.2 403 100.0
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 9.5e-154 547.4 401 69.8
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 1.0e-131 474.2 409 59.4
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 3.3e-130 469.2 401 60.6
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 1.2e-129 467.2 402 60.9
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 4.9e-126 455.3 400 58.2
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 2.4e-125 453.0 237 98.7
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 6.6e-123 444.9 406 56.4
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 8.9e-120 434.5 407 55.0
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 2.9e-118 429.5 398 55.3
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 1.1e-117 427.6 398 55.5
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 1.4e-117 427.2 402 54.7
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 2.1e-116 423.3 402 56.2
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 2.1e-116 423.3 402 56.2
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 2.1e-116 423.3 402 56.2
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 9.6e-114 414.5 402 55.7
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 1.3e-113 414.1 402 55.7
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 2.1e-113 413.3 404 54.7
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 4.8e-113 412.1 401 52.6
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 1.9e-109 400.2 403 51.1
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 7.1e-109 398.3 403 50.6
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 4.6e-108 395.6 400 51.5
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 4.6e-108 395.6 408 52.2
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 6.7e-107 391.7 413 50.8
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 2.5e-106 389.8 398 54.3
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 9.6e-106 387.9 404 51.0
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 1.1e-104 384.4 404 50.0
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 1.4e-104 384.0 410 52.0
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 3.1e-104 382.9 410 52.4
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 2.0e-103 380.2 403 50.4
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 5.8e-103 378.6 402 50.0
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 7.6e-103 378.3 401 50.6
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 9.9e-103 377.9 410 51.5
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 9.9e-103 377.9 400 50.8
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 1.7e-102 377.1 396 50.3
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 2.2e-102 376.7 403 49.1
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 2.9e-102 376.3 418 49.0
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 3.8e-102 375.9 404 49.5
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 4.9e-102 375.6 408 52.0
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 1.1e-101 374.4 403 48.9
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 1.1e-101 374.4 422 48.3
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 3.2e-101 372.9 407 49.6
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 3.2e-101 372.9 405 49.4
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 4.2e-101 372.5 412 48.3
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 1.6e-100 370.5 428 47.0
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 1.6e-100 370.5 402 49.8
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 4.6e-100 369.0 403 50.4
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 6.0e-100 368.6 408 48.3
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 7.9e-100 368.2 437 46.7
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 7.9e-100 368.2 402 50.2
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 7.9e-100 368.2 400 49.0
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 1.0e-99 367.9 404 49.0
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 1.8e-99 367.1 399 50.4
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 2.3e-99 366.7 403 49.9
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 3.0e-99 366.3 402 50.2
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.0e-99 366.3 402 50.2
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.1e-98 364.4 402 49.5
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 1.1e-98 364.4 403 48.6
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 1.5e-98 364.0 403 48.4
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 2.5e-98 363.2 401 50.4
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 3.3e-98 362.8 403 49.4
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 9.6e-98 361.3 399 48.6
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 2.8e-97 359.8 378 51.6
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 2.8e-97 359.8 403 48.6
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 3.7e-97 359.4 400 48.8
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 1.4e-96 357.5 364 52.2
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 1.4e-96 357.5 402 48.3
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 1.8e-96 357.1 407 48.2
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 1.5e-95 354.0 402 47.5
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 2.6e-95 353.2 355 54.6
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 7.6e-95 351.7 402 48.8
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 7.6e-95 351.7 397 48.1
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.7e-94 350.5 438 46.3
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 4.9e-94 349.0 400 49.0
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 6.5e-94 348.6 403 46.2
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 3.2e-93 346.3 433 44.6
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 4.2e-93 345.9 404 44.6
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.6e-92 342.4 400 48.0
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 1.8e-91 340.5 402 47.8
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 3.0e-91 339.7 400 45.8
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 3.9e-91 339.3 403 46.7
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 5.1e-91 339.0 408 47.8
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 6.7e-91 338.6 397 45.6
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.1e-90 337.8 404 48.3
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 2.8e-89 333.2 403 46.7
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 8.2e-89 331.6 404 47.3
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 1.8e-88 330.5 410 45.6
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 9.0e-88 328.2 402 45.3
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 1.2e-87 327.8 402 44.8
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.6e-87 326.6 403 43.4
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 5.9e-87 325.5 400 44.2
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 1.3e-86 324.3 402 46.3
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 2.2e-86 323.6 393 45.8
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 8.5e-86 321.6 412 45.9
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 4.2e-85 319.3 316 53.8
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 7.2e-85 318.5 423 43.5
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 3.0e-83 313.2 399 43.1
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 5.1e-83 312.4 606 33.3
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 2.2e-81 307.0 402 43.3
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 2.2e-81 307.0 401 43.1
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 5.3e-80 302.4 410 41.7
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 6.9e-80 302.0 477 38.8
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 1.2e-79 301.2 410 41.5
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 2.2e-78 297.0 400 40.8
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.0e-75 288.1 399 41.6
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 6.7e-75 285.4 408 40.2
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 5.3e-72 275.8 425 37.4
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 8.5e-70 268.5 322 44.7
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.1e-69 268.1 151 95.4
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.5e-69 266.9 399 41.6
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 3.6e-68 263.1 405 40.5
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 7.4e-66 255.4 301 47.8
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.7e-65 254.2 426 38.7
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 4.8e-65 252.7 403 40.7
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 9.1e-64 248.4 403 38.0
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 2.6e-63 246.9 401 37.9
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 3.5e-63 246.5 362 41.2
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 4.5e-63 246.1 244 51.2
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.4e-59 234.6 262 49.6
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 2.8e-57 226.9 216 51.9
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 1.8e-56 224.2 287 44.6
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 2.5e-53 213.8 400 35.0
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 1.1e-45 188.3 400 35.0
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 2.5e-45 187.2 235 41.3
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 6.1e-44 182.6 445 32.8
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.2e-43 179.5 377 35.5
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 6.8e-43 179.1 311 37.9
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 3.1e-40 170.2 231 42.0
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 1.2e-39 168.3 444 29.3
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.8e-36 157.1 293 34.8
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 5.2e-35 152.9 294 35.0
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.3e-33 148.3 324 34.3
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.8e-32 144.4 248 39.5
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.1e-32 143.3 402 30.1
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.3e-30 137.5 138 48.6
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 4.0e-27 126.7 401 30.7
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 4.0e-27 126.7 400 31.2
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 3.7e-25 120.2 156 43.6
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 4.9e-25 119.8 111 55.0
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 8.3e-25 119.0 186 39.2
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 7.8e-23 112.5 340 27.1
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 2.3e-22 110.9 146 44.5
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 7.3e-21 105.9 457 25.6
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 8.9e-19 99.0 169 39.6
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 9.2e-16 89.0 91 50.5
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.7e-15 87.4 127 38.6
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 3.0e-14 84.0 108 41.7
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 1.1e-13 82.0 157 33.1
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.1e-11 75.5 97 41.2
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 1.5e-10 71.6 95 40.0
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 9.9e-10 68.9 131 35.9
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 4.9e-09 66.6 124 34.7
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 4.9e-09 66.6 124 34.7
Oeu027301.1 Olea europaea HOM05D004436 ORTHO05D005179 4.1e-08 63.5 138 36.2


User provided reference genes

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