Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 0.0e+00 1160.2 562 100.0
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 4.6e-308 1060.4 562 89.9
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 6.1e-308 1060.1 562 89.7
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 6.1e-308 1060.1 562 89.9
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 6.1e-308 1060.1 562 87.9
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 3.0e-307 1057.7 562 89.5
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 3.9e-307 1057.4 562 89.7
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 6.7e-307 1056.6 562 89.3
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 8.8e-307 1056.2 562 89.7
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 2.5e-306 1054.7 562 89.7
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 4.3e-306 1053.9 562 89.5
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 4.3e-306 1053.9 562 89.7
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 5.7e-306 1053.5 562 89.5
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 5.7e-306 1053.5 562 89.5
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 5.7e-306 1053.5 562 89.5
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 7.4e-306 1053.1 562 89.0
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 7.4e-306 1053.1 562 89.3
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 9.7e-306 1052.7 562 89.3
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 9.7e-306 1052.7 562 89.3
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 2.8e-305 1051.2 562 89.0
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 1.2e-303 1045.8 562 88.4
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 4.5e-303 1043.9 562 89.0
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 4.5e-303 1043.9 562 88.3
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 9.4e-301 1036.2 564 89.2
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.6e-300 1035.4 565 87.8
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 2.7e-300 1034.6 565 87.3
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 2.3e-299 1031.6 564 87.6
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 3.9e-299 1030.8 561 88.6
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 5.1e-299 1030.4 564 88.5
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 6.7e-299 1030.0 565 87.4
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 8.8e-299 1029.6 563 87.9
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 1.1e-298 1029.2 565 86.7
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 2.0e-298 1028.5 565 87.8
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 9.7e-298 1026.2 559 87.7
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 1.3e-297 1025.8 564 87.4
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 2.2e-297 1025.0 565 87.4
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 2.2e-297 1025.0 562 88.3
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 6.3e-297 1023.5 565 87.1
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 1.4e-296 1022.3 564 86.9
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 3.1e-296 1021.1 564 87.8
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 4.1e-296 1020.8 564 86.9
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 7.0e-296 1020.0 564 87.6
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 1.2e-295 1019.2 565 86.9
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 2.0e-295 1018.5 562 86.7
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 4.5e-295 1017.3 565 86.7
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 4.5e-295 1017.3 564 87.4
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 7.7e-295 1016.5 565 86.7
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 7.7e-295 1016.5 564 86.3
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 2.2e-294 1015.0 564 86.7
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 3.8e-294 1014.2 564 86.3
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 3.8e-294 1014.2 565 86.9
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 5.0e-294 1013.8 567 87.1
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 8.5e-294 1013.1 564 85.6
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 1.1e-293 1012.7 562 86.3
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 1.1e-293 1012.7 562 86.3
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 1.9e-293 1011.9 564 85.6
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 7.2e-293 1010.0 564 85.1
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 7.2e-293 1010.0 564 85.1
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 7.2e-293 1010.0 562 86.3
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 7.2e-293 1010.0 564 85.5
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 9.4e-293 1009.6 564 86.3
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 1.6e-292 1008.8 564 85.1
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 2.1e-292 1008.4 564 85.5
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.1e-292 1008.4 564 86.0
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 4.7e-292 1007.3 564 86.0
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 6.1e-292 1006.9 564 86.3
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 1.0e-291 1006.1 564 86.0
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 1.4e-291 1005.7 563 85.4
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 1.4e-291 1005.7 564 85.6
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 3.0e-291 1004.6 565 85.1
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 3.9e-291 1004.2 565 85.7
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 3.9e-291 1004.2 565 85.7
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 3.9e-291 1004.2 564 84.9
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 3.9e-291 1004.2 564 85.5
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 2.0e-290 1001.9 564 84.9
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 4.4e-290 1000.7 564 84.8
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 9.7e-290 999.6 564 84.6
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 2.8e-289 998.0 562 85.4
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.8e-288 995.3 563 84.5
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 2.4e-288 995.0 564 84.8
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 5.3e-288 993.8 559 84.1
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 1.6e-287 992.3 562 84.9
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 2.6e-287 991.5 521 90.2
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 4.5e-287 990.7 564 84.0
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 7.7e-287 989.9 562 84.9
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 1.3e-286 989.2 559 84.8
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 2.9e-286 988.0 562 83.5
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 6.5e-286 986.9 556 84.5
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 6.5e-286 986.9 564 84.0
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 6.5e-286 986.9 559 83.5
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 8.5e-286 986.5 551 85.7
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 1.1e-285 986.1 561 84.0
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 1.5e-285 985.7 564 83.7
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 4.2e-285 984.2 562 84.5
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 1.2e-284 982.6 562 83.3
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 6.1e-284 980.3 562 82.6
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 1.4e-283 979.2 563 82.9
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 5.2e-283 977.2 562 81.5
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 5.2e-283 977.2 553 84.1
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 8.8e-283 976.5 551 84.6
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 1.2e-282 976.1 564 83.5
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 2.6e-282 974.9 568 82.9
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 3.4e-282 974.5 553 84.3
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.4e-282 974.2 550 84.4
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.7e-281 972.2 562 81.0
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.7e-281 971.1 550 84.0
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 7.0e-280 966.8 566 83.0
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 7.0e-280 966.8 551 83.5
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 9.1e-280 966.5 562 81.9
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 2.0e-279 965.3 566 82.9
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 4.5e-279 964.1 566 82.7
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.3e-278 962.6 553 83.0
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.7e-278 962.2 563 81.5
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 2.9e-278 961.4 561 82.7
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 3.6e-276 954.5 566 82.0
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 5.7e-274 947.2 534 84.3
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 7.2e-269 930.2 562 77.8
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 9.5e-269 929.9 562 77.9
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.6e-268 927.9 561 79.1
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.6e-268 927.9 553 80.1
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.8e-267 925.6 566 80.9
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 8.9e-267 923.3 562 76.5
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 9.2e-264 913.3 563 77.6
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 2.7e-263 911.8 552 78.4
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 5.9e-263 910.6 554 78.0
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.3e-262 908.7 554 77.4
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 6.8e-259 897.1 562 76.5
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 2.0e-258 895.6 553 77.4
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 7.5e-258 893.6 561 74.9
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 4.9e-257 891.0 568 74.1
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.3e-254 882.9 561 74.7
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 2.5e-253 878.6 561 74.3
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 8.0e-252 873.6 562 74.9
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.4e-248 862.8 562 74.2
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 7.3e-245 850.5 558 77.6
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 1.3e-241 839.7 562 73.0
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 1.9e-240 835.9 565 72.0
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 9.6e-237 823.5 562 71.2
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.5e-229 799.7 466 79.2
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 2.7e-223 778.9 419 91.2
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 7.6e-210 734.2 562 67.1
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 7.9e-207 724.2 425 80.9
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 7.4e-205 717.6 561 65.4
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 9.4e-184 647.5 373 80.7
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 3.2e-176 622.5 541 55.6
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 4.1e-163 578.9 418 71.1
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 2.2e-161 573.2 488 54.7
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 3.8e-161 572.4 330 80.3
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 3.8e-161 572.4 519 51.1
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 1.0e-153 547.7 293 85.0
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 6.2e-143 511.9 418 58.4
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.6e-135 486.1 550 50.7
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.3e-134 483.4 558 50.5
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 1.5e-133 480.7 315 72.7
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 2.8e-127 459.9 466 54.9
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 1.4e-99 367.9 546 42.5
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 2.8e-95 353.6 214 80.8
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 9.7e-80 302.0 489 36.2
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 1.8e-73 281.2 198 70.2
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 1.5e-72 278.1 198 69.7
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 4.1e-70 270.0 166 76.5
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 2.1e-50 204.5 133 77.4
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.0e-49 202.2 117 82.1
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.1e-46 192.2 128 75.8
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 6.5e-44 183.0 166 60.8
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 1.1e-43 182.2 128 64.8
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 2.5e-43 181.0 166 60.8
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 4.2e-43 180.3 166 60.8
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 4.7e-42 176.8 166 60.2
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 5.9e-37 159.8 314 31.5
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 5.2e-33 146.7 492 26.6
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 4.4e-32 143.7 210 43.3
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 3.7e-31 140.6 87 72.4
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.3e-28 132.1 87 73.6
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 5.6e-27 126.7 76 73.7
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 4.7e-26 123.6 85 65.9
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 1.0e-25 122.5 181 44.8
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 3.5e-21 107.5 103 53.4
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 2.3e-20 104.8 166 42.8
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 1.0e-12 79.3 46 73.9
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 3.2e-06 57.8 40 77.5
C03p50690 Brassica napus HOM05D003778 ORTHO05D004418 4.1e-06 57.4 32 84.4
BolC3t17356H Brassica oleracea HOM05D003778 ORTHO05D004418 4.1e-06 57.4 32 84.4


User provided reference genes

Program Settings