Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104804920 Tarenaya hassleriana HOM05D006980 ORTHO05D008704 3.1e-130 469.5 228 100.0
AL4G32340 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 1.2e-94 351.3 226 78.8
CARHR130480 Cardamine hirsuta HOM05D006980 ORTHO05D008704 5.2e-93 345.9 228 76.3
Aa31LG5G21360 Aethionema arabicum HOM05D006980 ORTHO05D008704 2.0e-92 344.0 226 77.4
AT2G36240 Arabidopsis thaliana HOM05D006980 ORTHO05D008704 2.6e-92 343.6 226 77.9
Sp4g18460 Schrenkiella parvula HOM05D006980 ORTHO05D008704 7.5e-92 342.0 226 78.8
BcaB02g09370 Brassica carinata HOM05D006980 ORTHO05D008704 1.0e-88 331.6 229 74.2
BcaC02g11732 Brassica carinata HOM05D006980 ORTHO05D008704 2.0e-84 317.4 232 70.7
BolC4t22838H Brassica oleracea HOM05D006980 ORTHO05D008704 2.0e-84 317.4 232 70.7
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 1.2e-81 308.1 226 70.8
C04p11900 Brassica napus HOM05D006980 ORTHO05D008704 5.1e-80 302.8 230 69.6
A05p09600 Brassica napus HOM05D006980 ORTHO05D008704 4.3e-79 299.7 228 68.9
BcaC02g11726 Brassica carinata HOM05D006980 ORTHO05D008704 4.5e-68 263.1 211 66.4
BcaC02g11728 Brassica carinata HOM05D006980 ORTHO05D008704 4.5e-68 263.1 211 66.4
Thhalv10016603m.g Eutrema salsugineum HOM05D006980 ORTHO05D008704 4.3e-63 246.5 186 67.7
FAN05G0999 Fragaria x ananassa HOM05D006980 ORTHO05D008704 8.1e-62 242.3 227 53.7
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 1.1e-61 241.9 214 64.0
BcaC02g11731 Brassica carinata HOM05D006980 ORTHO05D008704 1.4e-61 241.5 211 61.1
COL.COLO4_29731 Corchorus olitorius HOM05D006980 ORTHO05D008704 5.3e-61 239.6 214 56.5
Thecc.05G089500 Theobroma cacao HOM05D006980 ORTHO05D008704 2.6e-60 237.3 228 54.4
Cpa.g.sc166.4 Carica papaya HOM05D006980 ORTHO05D008704 3.4e-60 236.9 227 55.1
Prupe.7G109800 Prunus persica HOM05D006980 ORTHO05D008704 5.8e-60 236.1 204 56.9
RcHm_v2.0_Chr3g0473791 Rosa chinensis HOM05D006980 ORTHO05D008704 9.9e-60 235.3 227 51.5
Manes.09G055100 Manihot esculenta HOM05D006980 ORTHO05D008704 1.1e-58 231.9 179 58.7
TWI77G0642 Tripterygium wilfordii HOM05D006980 ORTHO05D008704 1.1e-58 231.9 209 56.0
Potri.006G068700 Populus trichocarpa HOM05D006980 ORTHO05D008704 5.5e-58 229.6 184 56.5
Duzib106G0372 Durio zibethinus HOM05D006980 ORTHO05D008704 3.9e-56 223.4 228 52.6
CANSAT64G1568 Cannabis sativa HOM05D006980 ORTHO05D008704 1.5e-55 221.5 210 54.8
Sed0006527 Sechium edule HOM05D006980 ORTHO05D008704 1.9e-55 221.1 213 53.1
Ciclev10011570m.g Citrus clementina HOM05D006980 ORTHO05D008704 4.3e-55 219.9 198 52.5
Atru.chr8.1533 Acer truncatum HOM05D006980 ORTHO05D008704 7.4e-55 219.2 212 51.9
QL07p038724 Quercus lobata HOM05D006980 ORTHO05D008704 2.8e-54 217.2 155 61.9
Cfa016610 Carpinus fangiana HOM05D006980 ORTHO05D008704 4.0e-53 213.4 216 50.9
CiPaw.09G014400 Carya illinoinensis HOM05D006980 ORTHO05D008704 4.0e-53 213.4 228 49.1
Dinv21206 Davidia involucrata HOM05D006980 ORTHO05D008704 7.6e-52 209.1 205 54.1
Gorai.009G402600 Gossypium raimondii HOM05D006980 ORTHO05D008704 7.6e-52 209.1 229 48.5
Lj1g0023344 Lotus japonicus HOM05D006980 ORTHO05D008704 2.9e-51 207.2 196 55.1
QL07p038975 Quercus lobata HOM05D006980 ORTHO05D008704 4.9e-51 206.5 155 58.7
CsaV3_6G007180 Cucumis sativus L. HOM05D006980 ORTHO05D008704 6.5e-51 206.1 213 50.2
SHI12421 Sapria himalayana HOM05D006980 ORTHO05D008704 6.5e-51 206.1 215 50.2
CSS0041599 Camellia sinensis var. sinensis HOM05D006980 ORTHO05D008704 8.4e-51 205.7 206 51.9
Cc02_g28460 Coffea canephora HOM05D006980 ORTHO05D008704 8.4e-51 205.7 201 53.7
Sc02g0000270 Simmondsia chinensis HOM05D006980 ORTHO05D008704 1.1e-50 205.3 191 52.4
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 7.1e-50 202.6 210 51.9
ClCG06G001250 Citrullus lanatus HOM05D006980 ORTHO05D008704 9.3e-50 202.2 213 47.4
MELO3C022409.2 Cucumis melo HOM05D006980 ORTHO05D008704 1.2e-49 201.8 215 49.3
Oeu056884.1 Olea europaea HOM05D006980 ORTHO05D008704 1.2e-49 201.8 181 55.2
arahy.Tifrunner.gnm1.ann1.IK7M5W Arachis hypogaea HOM05D006980 ORTHO05D008704 2.1e-49 201.1 174 54.0
PGR142G3286 Punica granatum HOM05D006980 ORTHO05D008704 2.1e-49 201.1 206 51.0
arahy.Tifrunner.gnm1.ann1.3P0NFT Arachis hypogaea HOM05D006980 ORTHO05D008704 3.5e-49 200.3 174 54.0
HanXRQChr02g0032651 Helianthus annuus HOM05D006980 ORTHO05D008704 6.0e-49 199.5 182 53.8
Peaxi162Scf00045g00156 Petunia axillaris HOM05D006980 ORTHO05D008704 1.3e-48 198.4 179 54.7
Rhsim03G0075000 Rhododendron simsii HOM05D006980 ORTHO05D008704 1.3e-48 198.4 224 49.6
Ah.02g130100 Amaranthus hybridus HOM05D006980 ORTHO05D008704 1.8e-48 198.0 224 46.4
Nitab4.5_0000025g0100 Nicotiana tabacum HOM05D006980 ORTHO05D008704 1.8e-48 198.0 179 54.2
Medtr7g104640 Medicago truncatula HOM05D006980 ORTHO05D008704 2.3e-48 197.6 181 53.6
SalBow3G1904 Salvia bowleyana HOM05D006980 ORTHO05D008704 2.3e-48 197.6 198 51.5
MSTRG.19261 Avicennia marina HOM05D006980 ORTHO05D008704 3.0e-48 197.2 211 50.7
Nitab4.5_0003259g0020 Nicotiana tabacum HOM05D006980 ORTHO05D008704 3.9e-48 196.8 179 53.6
SGA_v2.0_scaffold13G06715 Striga asiatica HOM05D006980 ORTHO05D008704 5.1e-48 196.4 153 58.2
Eucgr.G00971 Eucalyptus grandis HOM05D006980 ORTHO05D008704 8.7e-48 195.7 218 47.7
TPR.G19555 Trifolium pratense HOM05D006980 ORTHO05D008704 1.9e-47 194.5 207 48.8
CAN.G137.42 Capsicum annuum HOM05D006980 ORTHO05D008704 3.3e-47 193.7 163 57.1
ECA248G2176 Erigeron canadensis HOM05D006980 ORTHO05D008704 7.4e-47 192.6 206 49.5
PGSC0003DMG401009543 Solanum tuberosum HOM05D006980 ORTHO05D008704 9.7e-47 192.2 179 52.5
Solyc08g006170.1 Solanum lycopersicum HOM05D006980 ORTHO05D008704 1.6e-46 191.4 179 52.5
EL10Ac6g13708 Beta vulgaris HOM05D006980 ORTHO05D008704 2.2e-46 191.0 218 47.7
Migut.J01034 Erythranthe guttata HOM05D006980 ORTHO05D008704 2.2e-46 191.0 199 50.8
Lsat_1_v5_gn_5_164841 Lactuca sativa HOM05D006980 ORTHO05D008704 2.2e-46 191.0 181 51.9
Sopen08g002140 Solanum pennellii HOM05D006980 ORTHO05D008704 4.8e-46 189.9 179 52.0
CAN.G2030.1 Capsicum annuum HOM05D006980 ORTHO05D008704 1.8e-45 188.0 204 50.0
PSO541G2622 Papaver somniferum HOM05D006980 ORTHO05D008704 3.1e-45 187.2 223 45.3
Lj2P137T25 Lonicera japonica HOM05D006980 ORTHO05D008704 4.1e-45 186.8 148 58.1
PSO675G7214 Papaver somniferum HOM05D006980 ORTHO05D008704 2.6e-44 184.1 213 46.5
Aqoxy2G01180 Aquilegia oxysepala HOM05D006980 ORTHO05D008704 1.0e-43 182.2 223 44.4
TAR633G1277 Trochodendron aralioides HOM05D006980 ORTHO05D008704 1.1e-42 178.7 215 44.7
AUR62014076 Chenopodium quinoa HOM05D006980 ORTHO05D008704 2.5e-42 177.6 220 44.5
AUR62005415 Chenopodium quinoa HOM05D006980 ORTHO05D008704 9.4e-42 175.6 220 44.5
ATR0051G062 Amborella trichopoda HOM05D006980 ORTHO05D008704 2.0e-39 167.9 184 46.2
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.5e-39 167.5 228 41.7
Lalb_Chr20g0111701 Lupinus albus HOM05D006980 ORTHO05D008704 3.3e-39 167.2 179 49.7
Cc00_g27900 Coffea canephora HOM05D006980 ORTHO05D008704 4.3e-39 166.8 195 47.7
Nn6g34894 Nelumbo nucifera HOM05D006980 ORTHO05D008704 8.2e-38 162.5 149 51.7
GSVIVG01029738001 Vitis vinifera HOM05D006980 ORTHO05D008704 8.2e-38 162.5 206 45.1
Phvul.001G190300 Phaseolus vulgaris HOM05D006980 ORTHO05D008704 1.3e-35 155.2 185 44.9
VMungo1383G3509 Vigna mungo HOM05D006980 ORTHO05D008704 2.9e-35 154.1 157 48.4
Glyma.03G196000 Glycine max HOM05D006980 ORTHO05D008704 4.2e-34 150.2 161 49.7
Eucgr.G00972 Eucalyptus grandis HOM05D006980 ORTHO05D008704 1.6e-33 148.3 202 44.6
GSVIVG01015930001 Vitis vinifera HOM05D006980 ORTHO05D008704 2.7e-33 147.5 200 42.5
FAN02G3599 Fragaria x ananassa HOM05D006980 ORTHO05D008704 4.7e-33 146.7 107 63.6
HPP92_011900 Vanilla planifolia HOM05D006980 ORTHO05D008704 1.0e-32 145.6 181 43.1
SEGI_13947 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 1.4e-32 145.2 151 45.0
SEGI_40503 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 1.4e-32 145.2 151 45.0
Haze_19614 Corylus avellana HOM05D006980 ORTHO05D008704 2.0e-31 141.4 107 57.9
Sabra06G0051200 Salix brachista HOM05D006980 ORTHO05D008704 2.0e-31 141.4 107 58.9
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.4e-29 135.2 211 40.8
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 2.9e-27 127.5 107 57.0
arahy.Tifrunner.gnm1.ann1.FQN2WV Arachis hypogaea HOM05D006980 ORTHO05D008704 1.6e-25 121.7 112 52.7
DCAR_013476 Daucus carota HOM05D006980 ORTHO05D008704 4.4e-23 113.6 87 57.5
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 1.1e-21 109.0 107 50.5
AL53U10010 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 4.2e-18 97.1 179 38.5
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 2.1e-17 94.7 198 36.4
Carub.0004s1800 Capsella rubella HOM05D006980 ORTHO05D008704 4.7e-17 93.6 53 81.1
CARHR182760 Cardamine hirsuta HOM05D006980 ORTHO05D008704 4.1e-13 80.5 80 58.8
Zm00001eb365120 Zea mays HOM05D006980 ORTHO05D008704 1.2e-12 79.0 209 32.5
Os01g0908800 Oryza sativa ssp. japonica HOM05D006980 ORTHO05D008704 6.5e-11 73.2 187 32.1
FvH4_6g18780 Fragaria vesca HOM05D006980 ORTHO05D008704 1.9e-10 71.6 43 69.8
FAN14G4048 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.9e-10 71.6 43 69.8
FAN05G0477 Fragaria x ananassa HOM05D006980 ORTHO05D008704 2.7e-09 67.8 43 65.1
Zm00001eb434610 Zea mays HOM05D006980 ORTHO05D008704 2.3e-08 64.7 102 34.3


User provided reference genes

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