Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 5.0e-224 780.8 393 100.0
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 6.4e-155 551.2 379 73.1
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 3.2e-154 548.9 379 72.6
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 2.7e-153 545.8 379 73.6
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 4.6e-153 545.0 388 70.6
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 7.8e-153 544.3 379 72.0
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 1.7e-152 543.1 396 70.5
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 2.4e-149 532.7 387 69.0
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 3.1e-149 532.3 387 68.5
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 1.5e-148 530.0 387 68.7
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 5.8e-148 528.1 387 68.2
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 2.9e-147 525.8 387 68.5
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 1.9e-146 523.1 387 68.0
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 1.6e-145 520.0 378 71.4
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 4.6e-137 491.9 409 63.1
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 3.4e-124 449.1 325 69.8
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 7.6e-116 421.4 350 64.9
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 1.0e-115 421.0 395 55.9
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 2.9e-115 419.5 386 56.7
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 3.8e-115 419.1 391 56.5
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 1.4e-114 417.2 387 58.1
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 2.5e-114 416.4 396 55.6
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 2.5e-114 416.4 398 56.5
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 9.3e-114 414.5 384 55.5
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 1.2e-113 414.1 396 55.3
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 2.7e-113 412.9 384 55.2
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 7.9e-113 411.4 387 56.1
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 1.0e-112 411.0 380 57.6
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 1.0e-112 411.0 426 52.8
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 1.8e-112 410.2 391 55.0
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 6.7e-112 408.3 385 56.4
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 1.5e-111 407.1 372 57.0
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 1.9e-111 406.8 393 54.2
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 1.9e-111 406.8 394 54.3
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 1.9e-111 406.8 393 55.7
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 4.3e-111 405.6 386 56.0
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 5.7e-111 405.2 392 54.1
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 5.7e-111 405.2 392 54.3
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 3.7e-110 402.5 385 55.3
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 4.8e-110 402.1 386 54.1
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 1.8e-109 400.2 387 54.0
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 1.8e-109 400.2 384 54.9
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 1.8e-109 400.2 401 51.4
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 4.1e-109 399.1 386 53.6
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 6.9e-109 398.3 384 54.7
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 1.5e-108 397.1 390 55.1
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 1.5e-108 397.1 386 52.8
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 2.6e-108 396.4 391 54.2
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 4.5e-108 395.6 387 53.5
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 4.5e-108 395.6 398 55.0
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 7.7e-108 394.8 391 52.9
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 7.7e-108 394.8 387 54.8
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 1.0e-107 394.4 377 54.4
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 1.3e-107 394.0 379 52.2
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 1.7e-107 393.7 387 54.5
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 2.9e-107 392.9 387 54.5
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 3.8e-107 392.5 387 54.8
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 6.5e-107 391.7 385 51.7
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 3.2e-106 389.4 374 52.7
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 6.1e-105 385.2 381 53.0
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 6.1e-105 385.2 386 52.8
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 2.3e-104 383.3 387 53.2
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 1.5e-103 380.6 396 53.0
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 1.5e-103 380.6 382 53.9
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 3.3e-103 379.4 358 56.1
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 4.4e-103 379.0 379 53.0
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 6.3e-102 375.2 389 51.2
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 8.2e-102 374.8 375 53.6
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 3.1e-101 372.9 408 50.2
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 4.1e-101 372.5 384 51.8
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 5.3e-101 372.1 380 53.7
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 2.6e-100 369.8 381 51.7
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 3.4e-100 369.4 391 50.4
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 7.7e-100 368.2 391 49.6
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 2.2e-99 366.7 366 52.7
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 2.9e-99 366.3 383 50.4
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 6.5e-99 365.2 430 48.8
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.9e-98 363.6 387 52.5
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 4.2e-98 362.5 374 52.4
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 5.5e-98 362.1 385 49.6
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 1.0e-96 357.8 389 48.8
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 3.0e-96 356.3 386 49.5
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 5.7e-95 352.1 396 48.7
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 9.7e-95 351.3 410 47.6
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 4.8e-94 349.0 400 49.0
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 3.1e-93 346.3 368 50.0
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 5.9e-92 342.0 387 50.6
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 5.0e-91 339.0 321 54.5
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 1.9e-90 337.0 384 50.5
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 4.2e-90 335.9 376 49.5
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.0e-88 331.3 322 54.3
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 2.0e-84 317.0 258 65.9
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 3.5e-84 316.2 390 46.9
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.3e-83 314.3 335 51.9
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 2.2e-83 313.5 333 51.4
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 1.1e-82 311.2 373 44.5
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 1.9e-82 310.5 288 56.2
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 9.1e-77 291.6 361 44.6
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 2.0e-76 290.4 287 52.6
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 8.8e-72 275.0 362 42.8
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 2.2e-70 270.4 350 44.9
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 1.3e-67 261.2 369 41.7
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 3.3e-66 256.5 396 40.4
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 7.3e-66 255.4 381 41.2
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 8.9e-64 248.4 312 44.6
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 2.7e-60 236.9 302 43.4
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 3.5e-60 236.5 191 66.0
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 7.3e-58 228.8 181 64.1
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 7.3e-58 228.8 181 64.1
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 1.2e-57 228.0 414 36.5
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 1.7e-51 207.6 339 37.8
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 2.4e-45 187.2 355 36.3
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.1e-37 161.8 149 55.0
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 9.2e-37 158.7 188 47.3
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.2e-36 158.3 184 51.1
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 3.9e-35 153.3 370 34.1
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 9.6e-34 148.7 126 61.1
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 5.8e-31 139.4 197 43.7
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 1.7e-30 137.9 347 32.0
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 9.6e-26 122.1 165 41.8
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.4e-21 108.2 111 48.6
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 5.4e-21 106.3 109 48.6
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 3.5e-20 103.6 358 25.1
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 7.4e-18 95.9 159 39.6
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 3.7e-17 93.6 81 56.8
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 2.2e-14 84.3 70 58.6
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 2.9e-14 84.0 64 60.9
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 3.8e-14 83.6 70 57.1
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 3.5e-12 77.0 133 38.3
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 1.1e-10 72.0 59 61.0
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 3.3e-10 70.5 66 56.1
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 3.3e-10 70.5 66 56.1


User provided reference genes

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