Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 1.3e-88 329.7 169 100.0
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 3.0e-69 265.4 169 79.3
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 3.0e-69 265.4 169 78.7
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 3.0e-69 265.4 169 78.7
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 8.8e-69 263.8 158 81.6
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 7.4e-68 260.8 169 76.9
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 7.4e-68 260.8 169 76.9
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 9.7e-68 260.4 160 80.6
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 1.3e-67 260.0 169 77.5
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 1.7e-67 259.6 169 76.3
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 1.7e-67 259.6 169 76.9
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 1.7e-67 259.6 159 78.0
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 2.2e-67 259.2 169 76.9
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 2.2e-67 259.2 169 76.9
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 2.2e-67 259.2 169 76.9
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 1.1e-66 256.9 159 78.6
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 1.4e-66 256.5 158 79.7
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 3.1e-66 255.4 163 77.3
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 3.1e-66 255.4 163 77.3
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 7.0e-66 254.2 160 79.4
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 7.0e-66 254.2 160 79.4
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 9.1e-66 253.8 163 77.3
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 9.1e-66 253.8 162 77.2
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 1.2e-65 253.4 162 77.8
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 2.0e-65 252.7 166 76.5
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 2.6e-65 252.3 158 79.1
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 4.5e-65 251.5 159 78.0
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 7.7e-65 250.8 169 74.6
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 1.0e-64 250.4 159 78.0
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 1.3e-64 250.0 155 78.7
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 1.3e-64 250.0 160 76.2
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 1.3e-64 250.0 160 77.5
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 2.9e-64 248.8 156 76.9
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 5.0e-64 248.1 154 77.3
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 6.5e-64 247.7 155 79.4
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 8.5e-64 247.3 160 76.9
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 8.5e-64 247.3 163 74.2
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 1.1e-63 246.9 157 79.6
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 1.1e-63 246.9 163 74.8
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.9e-63 246.1 160 76.2
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 2.5e-63 245.7 160 75.6
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 2.5e-63 245.7 154 79.2
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 3.2e-63 245.4 155 78.7
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 4.2e-63 245.0 158 77.2
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 5.5e-63 244.6 160 75.6
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 7.2e-63 244.2 157 75.8
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 9.4e-63 243.8 155 78.1
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 9.4e-63 243.8 155 78.1
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 1.2e-62 243.4 155 77.4
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 1.6e-62 243.0 160 74.4
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 1.6e-62 243.0 153 79.1
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 2.7e-62 242.3 157 75.2
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 3.6e-62 241.9 154 74.7
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 3.6e-62 241.9 154 77.9
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 4.7e-62 241.5 151 80.1
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 4.7e-62 241.5 157 74.5
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 4.7e-62 241.5 157 76.4
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 4.7e-62 241.5 155 77.4
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 4.7e-62 241.5 157 75.8
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 6.1e-62 241.1 162 72.8
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 8.0e-62 240.7 161 73.9
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 1.0e-61 240.4 164 74.4
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 1.0e-61 240.4 154 77.3
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 1.4e-61 240.0 159 74.8
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 1.4e-61 240.0 160 76.9
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 1.8e-61 239.6 154 74.0
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 1.8e-61 239.6 146 80.1
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 1.8e-61 239.6 159 73.6
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 3.0e-61 238.8 159 73.6
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 3.0e-61 238.8 158 74.7
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 3.0e-61 238.8 154 75.3
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 5.2e-61 238.0 154 77.3
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 5.2e-61 238.0 150 78.0
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 1.1e-60 236.9 159 74.2
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 1.5e-60 236.5 161 75.2
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 1.5e-60 236.5 160 73.1
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 1.5e-60 236.5 143 80.4
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 2.0e-60 236.1 159 73.0
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 3.3e-60 235.3 152 73.7
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 7.4e-60 234.2 158 72.2
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 1.7e-59 233.0 151 74.2
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 2.8e-59 232.3 159 71.7
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 8.2e-59 230.7 146 78.8
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 2.4e-58 229.2 160 72.5
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 7.0e-58 227.6 157 72.6
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 9.1e-58 227.3 152 73.0
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 1.6e-57 226.5 195 63.6
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 2.0e-57 226.1 146 74.7
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 7.7e-57 224.2 152 71.7
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 1.3e-56 223.4 144 76.4
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 3.8e-56 221.9 157 68.2
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 1.1e-55 220.3 178 64.6
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 9.4e-55 217.2 156 66.7
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 8.0e-54 214.2 177 63.8
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 4.4e-52 208.4 160 67.5
vmacro15466 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 5.3e-50 201.4 164 67.1
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 2.7e-49 199.1 162 59.3
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 2.7e-46 189.1 151 60.9
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 1.5e-44 183.3 161 56.5
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 6.3e-43 177.9 94 89.4
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 5.9e-41 171.4 115 73.9
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 5.9e-41 171.4 95 85.3
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 1.3e-40 170.2 106 80.2
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 1.7e-40 169.9 120 70.8
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 6.6e-40 167.9 164 54.9
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 6.8e-37 157.9 158 51.3
Haze_11433 Corylus avellana HOM05D006656 ORTHO05D008208 1.2e-36 157.1 257 41.2
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 2.0e-36 156.4 158 57.6
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 4.9e-35 151.8 154 51.9
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 3.5e-33 145.6 151 48.3
SMO271G0046 Selaginella moellendorffii HOM05D006656 ORTHO05D008208 9.8e-28 127.5 140 45.7
arahy.Tifrunner.gnm1.ann1.USJ12Z Arachis hypogaea HOM05D006656 ORTHO05D008208 7.0e-26 121.3 88 67.0
Nitab4.5_0000014g0170 Nicotiana tabacum HOM05D006656 ORTHO05D008208 6.4e-19 98.2 77 66.2
Gohir.A02G041301 Gossypium hirsutum HOM05D006656 ORTHO05D008208 4.6e-17 92.0 63 68.3
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 1.2e-14 84.0 64 65.6
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 6.2e-14 81.6 91 47.3
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 2.3e-13 79.7 62 62.9
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 8.9e-13 77.8 55 70.9
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 2.0e-12 76.6 45 80.0
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 4.1e-10 68.9 37 89.2
MCO04G243 Micromonas commoda HOM05D006656 ORTHO05D008208 4.1e-10 68.9 137 33.6
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 2.7e-09 66.2 37 83.8
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.2e-06 57.4 52 59.6


User provided reference genes

Program Settings