Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 3.5e-62 241.9 165 100.0
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.3e-29 133.7 128 63.3
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 1.2e-25 120.6 134 60.4
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 1.2e-25 120.6 134 60.4
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 1.2e-25 120.6 134 60.4
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 2.6e-25 119.4 133 57.9
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 9.9e-25 117.5 131 58.8
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 3.8e-24 115.5 134 58.2
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 4.2e-23 112.1 64 82.8
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 4.2e-23 112.1 64 82.8
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 4.2e-23 112.1 64 82.8
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 5.4e-23 111.7 133 57.1
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 9.3e-23 110.9 99 62.6
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 1.6e-22 110.2 131 58.8
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 1.6e-22 110.2 131 58.8
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 6.0e-22 108.2 121 56.2
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 2.3e-21 106.3 131 52.7
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 2.3e-21 106.3 81 63.0
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 3.9e-21 105.5 61 82.0
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 8.7e-21 104.4 114 56.1
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 1.9e-20 103.2 85 62.4
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 5.6e-20 101.7 126 49.2
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.4e-20 101.3 109 55.0
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 1.6e-19 100.1 124 52.4
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 2.1e-19 99.8 116 56.0
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.8e-19 99.4 58 82.8
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 3.6e-19 99.0 56 83.9
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 4.8e-19 98.6 125 50.4
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 8.1e-19 97.8 124 50.0
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.1e-18 97.4 58 81.0
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.1e-18 97.4 58 81.0
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 1.4e-18 97.1 112 50.9
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 1.8e-18 96.7 61 77.0
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 1.8e-18 96.7 61 77.0
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.4e-18 96.3 58 79.3
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 2.4e-18 96.3 117 51.3
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 2.4e-18 96.3 120 52.5
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 2.4e-18 96.3 51 88.2
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.1e-18 95.9 118 51.7
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 4.0e-18 95.5 130 53.8
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 6.9e-18 94.7 118 55.9
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 1.2e-17 94.0 113 50.4
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 1.2e-17 94.0 76 64.5
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.6e-17 92.8 114 55.3
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 2.6e-17 92.8 47 91.5
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 3.4e-17 92.4 132 47.0
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 5.8e-17 91.7 67 65.7
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 9.9e-17 90.9 57 77.2
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 1.3e-16 90.5 52 80.8
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 2.2e-16 89.7 58 72.4
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 2.9e-16 89.4 57 73.7
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 3.8e-16 89.0 125 44.8
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 4.9e-16 88.6 127 46.5
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 6.4e-16 88.2 56 75.0
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 6.4e-16 88.2 139 48.2
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 8.4e-16 87.8 110 51.8
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 8.4e-16 87.8 109 52.3
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 8.4e-16 87.8 46 89.1
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.4e-15 87.0 107 52.3
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.4e-15 87.0 104 51.0
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 2.4e-15 86.3 48 85.4
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 2.4e-15 86.3 115 50.4
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 2.4e-15 86.3 68 67.6
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 3.2e-15 85.9 102 51.0
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 3.2e-15 85.9 112 50.9
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 4.2e-15 85.5 118 49.2
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 4.2e-15 85.5 128 46.1
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 4.2e-15 85.5 51 78.4
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 5.5e-15 85.1 109 54.1
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 5.5e-15 85.1 61 67.2
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 7.1e-15 84.7 115 52.2
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.1e-15 84.7 50 80.0
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.1e-15 84.7 49 81.6
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 7.1e-15 84.7 49 81.6
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 4.6e-14 82.0 51 76.5
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 4.6e-14 82.0 113 50.4
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 7.9e-14 81.3 115 50.4
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 7.9e-14 81.3 44 86.4
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 7.9e-14 81.3 50 78.0
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 1.0e-13 80.9 58 69.0
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 1.3e-13 80.5 58 69.0
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 1.3e-13 80.5 58 69.0
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 1.3e-13 80.5 95 51.6
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 1.8e-13 80.1 109 49.5
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 1.8e-13 80.1 53 73.6
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 2.3e-13 79.7 119 47.9
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 2.3e-13 79.7 45 80.0
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 3.0e-13 79.3 43 81.4
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 3.0e-13 79.3 43 83.7
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 3.9e-13 79.0 98 52.0
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 5.1e-13 78.6 103 53.4
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 5.1e-13 78.6 109 47.7
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 5.1e-13 78.6 121 45.5
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 5.1e-13 78.6 98 50.0
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 8.7e-13 77.8 39 87.2
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 1.5e-12 77.0 101 48.5
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.5e-12 77.0 53 67.9
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 1.9e-12 76.6 38 89.5
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 1.9e-12 76.6 49 75.5
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 3.3e-12 75.9 44 77.3
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 4.3e-12 75.5 39 84.6
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 7.4e-12 74.7 44 77.3
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 9.6e-12 74.3 96 51.0
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.3e-11 73.9 106 49.1
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 1.3e-11 73.9 39 79.5
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 1.3e-11 73.9 38 84.2
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 1.3e-11 73.9 40 85.0
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 1.3e-11 73.9 46 73.9
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 1.6e-11 73.6 36 91.7
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 1.6e-11 73.6 40 87.5
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 1.6e-11 73.6 37 86.5
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 1.6e-11 73.6 40 87.5
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 2.1e-11 73.2 35 94.3
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 2.1e-11 73.2 35 94.3
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 2.1e-11 73.2 96 50.0
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 2.8e-11 72.8 114 45.6
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 6.2e-11 71.6 107 45.8
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 1.1e-10 70.9 51 62.7
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 1.1e-10 70.9 115 47.0
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 1.8e-10 70.1 184 32.6
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 1.8e-10 70.1 51 66.7
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 3.1e-10 69.3 109 46.8
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 4.0e-10 68.9 35 82.9
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 1.2e-09 67.4 131 42.7
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 1.5e-09 67.0 93 46.2
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 2.6e-09 66.2 100 49.0
Sabra18G0067400 Salix brachista HOM05D005853 ORTHO05D007308 7.6e-09 64.7 36 75.0
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 4.9e-08 62.0 91 41.8
HPP92_004788 Vanilla planifolia HOM05D005853 ORTHO05D007308 1.1e-07 60.8 45 64.4


User provided reference genes

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