Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104804518 Tarenaya hassleriana HOM05D008625 ORTHO05D010623 7.9e-64 246.9 120 100.0
THA.LOC104803750 Tarenaya hassleriana HOM05D008625 ORTHO05D010623 4.3e-46 188.0 121 82.6
C03p86970 Brassica napus HOM05D008625 ORTHO05D010623 3.7e-29 131.7 129 62.0
C03p86990 Brassica napus HOM05D008625 ORTHO05D010623 3.7e-29 131.7 129 62.0
BolC3t20994H Brassica oleracea HOM05D008625 ORTHO05D010623 3.7e-29 131.7 129 62.0
Sp7g30630 Schrenkiella parvula HOM05D008625 ORTHO05D010623 6.3e-29 131.0 136 61.0
AT4G32860 Arabidopsis thaliana HOM05D008625 ORTHO05D010623 1.1e-28 130.2 132 60.6
Aa31sc706G10 Aethionema arabicum HOM05D008625 ORTHO05D010623 1.4e-28 129.8 134 60.4
Thhalv10026293m.g Eutrema salsugineum HOM05D008625 ORTHO05D010623 1.8e-28 129.4 136 57.4
AL7G18860 Arabidopsis lyrata HOM05D008625 ORTHO05D010623 3.1e-28 128.6 132 59.8
CARHR240860 Cardamine hirsuta HOM05D008625 ORTHO05D010623 4.1e-28 128.3 128 59.4
A08p17870 Brassica napus HOM05D008625 ORTHO05D010623 7.0e-28 127.5 129 61.2
BraA08t33739Z Brassica rapa HOM05D008625 ORTHO05D010623 7.0e-28 127.5 129 61.2
Carub.0007s0763 Capsella rubella HOM05D008625 ORTHO05D010623 9.1e-28 127.1 132 58.3
BcaC09g52083 Brassica carinata HOM05D008625 ORTHO05D010623 5.9e-27 124.4 128 56.2
C01p06020 Brassica napus HOM05D008625 ORTHO05D010623 5.9e-27 124.4 128 56.2
BcaNung06387 Brassica carinata HOM05D008625 ORTHO05D010623 1.0e-26 123.6 129 55.8
A03p61610 Brassica napus HOM05D008625 ORTHO05D010623 1.7e-26 122.9 129 56.6
BolC1t00594H Brassica oleracea HOM05D008625 ORTHO05D010623 1.7e-26 122.9 129 58.1
C07p59370 Brassica napus HOM05D008625 ORTHO05D010623 5.0e-26 121.3 129 55.8
BolC7t46381H Brassica oleracea HOM05D008625 ORTHO05D010623 5.0e-26 121.3 129 55.8
A01p05420 Brassica napus HOM05D008625 ORTHO05D010623 8.5e-26 120.6 129 56.6
BraA01t00516Z Brassica rapa HOM05D008625 ORTHO05D010623 8.5e-26 120.6 129 56.6
BraA03t15203Z Brassica rapa HOM05D008625 ORTHO05D010623 8.5e-26 120.6 129 55.8
BcaC09g52084 Brassica carinata HOM05D008625 ORTHO05D010623 5.5e-25 117.9 128 57.0
BcaB03g12766 Brassica carinata HOM05D008625 ORTHO05D010623 2.7e-19 99.0 123 52.0
Cpa.g.sc7.202 Carica papaya HOM05D008625 ORTHO05D010623 8.8e-15 84.0 112 48.2
Thecc.09G047000 Theobroma cacao HOM05D001131 ORTHO05D010623 9.1e-12 73.9 137 40.1
Psat5g020400 Pisum sativum HOM05D008625 ORTHO05D010623 2.0e-11 72.8 115 43.5
Psat5g020440 Pisum sativum HOM05D008625 ORTHO05D010623 4.5e-11 71.6 110 40.9
VMungo1309G2682 Vigna mungo HOM05D008625 ORTHO05D010623 4.5e-11 71.6 115 41.7
Glyma.04G085800 Glycine max HOM05D008625 ORTHO05D010623 7.7e-11 70.9 123 39.8
Phvul.009G111200 Phaseolus vulgaris HOM05D008625 ORTHO05D010623 1.0e-10 70.5 119 42.0
Medtr3g109920 Medicago truncatula HOM05D008625 ORTHO05D010623 2.3e-10 69.3 116 41.4
TPR.G15108 Trifolium pratense HOM05D008625 ORTHO05D010623 3.8e-10 68.6 110 41.8
Medtr3g109900 Medicago truncatula HOM05D008625 ORTHO05D010623 5.0e-10 68.2 116 39.7
Lalb_Chr08g0242961 Lupinus albus HOM05D008625 ORTHO05D010623 2.5e-09 65.9 135 37.0
Glyma.06G087400 Glycine max HOM05D008625 ORTHO05D010623 5.5e-09 64.7 131 38.9
Prupe.1G446200 Prunus persica HOM05D001131 ORTHO05D010623 5.5e-09 64.7 150 37.3
MD15G1091300 Malus domestica HOM05D001131 ORTHO05D010623 9.5e-09 63.9 142 38.0
FAN20G1640 Fragaria x ananassa HOM05D008625 ORTHO05D010623 1.2e-08 63.5 142 36.6
TAR624G0151 Trochodendron aralioides HOM05D001131 ORTHO05D000972 1.2e-08 63.5 143 35.7
FAN15G2009 Fragaria x ananassa HOM05D008625 ORTHO05D010623 2.8e-08 62.4 142 35.9
Ca_15580_v3 Cicer arietinum L. HOM05D008625 ORTHO05D010623 4.7e-08 61.6 111 37.8
Gohir.D06G091500 Gossypium hirsutum HOM05D001131 ORTHO05D010623 4.7e-08 61.6 137 34.3
Gohir.A06G092000 Gossypium hirsutum HOM05D001131 ORTHO05D010623 6.1e-08 61.2 137 34.3
Gorai.010G105500 Gossypium raimondii HOM05D001131 ORTHO05D010623 8.0e-08 60.8 137 34.3
Atru.chr7.2063 Acer truncatum HOM05D001131 ORTHO05D000972 1.0e-07 60.5 133 36.8
MD08G1111800 Malus domestica HOM05D008625 ORTHO05D010623 1.0e-07 60.5 144 37.5
Sabra18G0045000 Salix brachista HOM05D001131 ORTHO05D000972 1.0e-07 60.5 146 32.9
Ciclev10009617m.g Citrus clementina HOM05D001131 ORTHO05D000972 2.3e-07 59.3 143 35.7
COL.COLO4_20990 Corchorus olitorius HOM05D001131 ORTHO05D010623 2.3e-07 59.3 133 36.8
RcHm_v2.0_Chr6g0306461 Rosa chinensis HOM05D008625 ORTHO05D010623 2.3e-07 59.3 145 34.5
FAN27G2073 Fragaria x ananassa HOM05D008625 ORTHO05D010623 3.0e-07 58.9 146 34.9
Lj1g0026047 Lotus japonicus HOM05D008625 ORTHO05D010623 4.0e-07 58.5 120 39.2
FvH4_2g35430 Fragaria vesca HOM05D008625 ORTHO05D010623 5.2e-07 58.2 146 34.9
GSVIVG01035287001 Vitis vinifera HOM05D001131 ORTHO05D000972 5.2e-07 58.2 149 35.6
CSS0013249 Camellia sinensis var. sinensis HOM05D001131 ORTHO05D000972 8.9e-07 57.4 131 38.9
arahy.Tifrunner.gnm1.ann1.66V3J9 Arachis hypogaea HOM05D008625 ORTHO05D010623 1.2e-06 57.0 139 33.8
TWI63G1453 Tripterygium wilfordii HOM05D001131 ORTHO05D000972 1.5e-06 56.6 138 34.8
Nn8g39098 Nelumbo nucifera HOM05D001131 ORTHO05D000972 2.6e-06 55.8 144 31.2


User provided reference genes

Program Settings