Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 1.4e-243 845.9 434 100.0
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 3.6e-199 698.4 441 84.1
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 3.1e-187 658.7 441 79.4
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 1.6e-183 646.4 440 78.4
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 2.1e-183 646.0 438 79.0
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 1.0e-182 643.7 438 78.1
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 8.9e-182 640.6 438 78.1
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 1.3e-180 636.7 437 77.8
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 4.7e-175 618.2 435 75.6
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 7.5e-173 610.9 438 74.7
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 1.7e-172 609.8 433 75.5
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 6.4e-172 607.8 433 75.1
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 9.5e-160 567.4 437 70.9
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 7.3e-152 541.2 446 65.2
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 9.5e-152 540.8 446 65.0
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 1.6e-151 540.0 446 65.5
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 1.6e-151 540.0 440 65.2
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 3.6e-151 538.9 454 63.0
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 3.6e-151 538.9 441 66.2
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 1.1e-150 537.3 454 64.1
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 2.4e-150 536.2 406 69.2
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 5.2e-150 535.0 440 65.5
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 1.5e-149 533.5 428 64.7
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 2.0e-149 533.1 455 64.6
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 2.0e-149 533.1 457 63.0
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 2.0e-149 533.1 457 62.8
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 4.4e-149 531.9 404 67.8
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 2.9e-148 529.3 393 70.5
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 3.8e-148 528.9 442 66.1
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 8.4e-148 527.7 456 64.3
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 1.9e-147 526.6 436 64.7
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 3.2e-147 525.8 372 72.8
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 3.2e-147 525.8 450 62.9
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 5.4e-147 525.0 453 64.7
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 7.1e-147 524.6 462 61.9
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 1.2e-146 523.9 468 62.6
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 1.6e-146 523.5 357 73.7
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 2.1e-146 523.1 430 64.7
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 2.7e-146 522.7 444 65.3
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 2.7e-146 522.7 464 62.1
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 3.5e-146 522.3 454 64.1
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 6.0e-146 521.5 455 62.9
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 6.0e-146 521.5 450 62.4
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 1.0e-145 520.8 349 76.8
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 1.0e-145 520.8 349 76.8
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 1.0e-145 520.8 419 65.9
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 2.3e-145 519.6 454 63.4
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 3.9e-145 518.8 397 67.8
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 5.1e-145 518.5 378 71.4
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 8.7e-145 517.7 460 62.4
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 1.6e-143 513.5 438 63.9
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 1.6e-143 513.5 441 63.0
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 2.1e-143 513.1 438 63.9
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 2.1e-143 513.1 461 61.8
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 6.2e-143 511.5 368 70.9
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 8.1e-143 511.1 445 62.2
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 8.1e-143 511.1 460 61.3
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 1.4e-142 510.4 480 61.5
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 6.9e-142 508.1 458 62.4
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 6.9e-142 508.1 443 62.1
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 9.0e-142 507.7 336 78.0
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 9.0e-142 507.7 446 62.3
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 9.0e-142 507.7 442 61.8
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 2.0e-141 506.5 358 72.3
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 3.4e-141 505.8 450 62.0
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 4.4e-141 505.4 372 69.6
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 4.4e-141 505.4 441 63.0
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 9.9e-141 504.2 378 69.8
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 9.9e-141 504.2 437 63.4
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.7e-140 503.4 333 77.8
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 2.2e-140 503.1 355 71.5
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 2.2e-140 503.1 442 61.1
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 2.2e-140 503.1 355 71.3
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 4.9e-140 501.9 445 61.8
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 2.4e-139 499.6 381 67.7
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 2.4e-139 499.6 434 62.4
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 9.3e-139 497.7 409 64.3
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 1.6e-138 496.9 469 58.8
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 2.1e-138 496.5 466 60.1
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 4.6e-138 495.4 375 69.3
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 7.8e-138 494.6 394 65.7
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 1.0e-137 494.2 341 74.8
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 3.0e-137 492.7 438 61.6
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 1.1e-136 490.7 412 63.3
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 5.6e-136 488.4 442 62.0
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 5.6e-136 488.4 405 63.0
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 7.3e-136 488.0 411 62.5
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 2.8e-135 486.1 524 54.0
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 2.4e-134 483.0 453 59.6
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 5.3e-134 481.9 343 71.7
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 2.0e-133 479.9 391 63.9
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 2.2e-132 476.5 410 62.7
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 6.4e-132 474.9 439 59.5
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 4.2e-131 472.2 439 59.9
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 5.4e-131 471.9 409 61.1
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 1.2e-130 470.7 466 56.9
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 2.5e-128 463.0 472 55.9
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 1.4e-126 457.2 351 66.4
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 9.0e-126 454.5 351 67.0
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 4.6e-122 442.2 451 56.5
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 1.5e-120 437.2 439 57.4
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 4.8e-119 432.2 302 72.5
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 1.5e-117 427.2 447 55.5
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 1.0e-116 424.5 336 65.2
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 3.1e-110 402.9 343 63.8
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 3.8e-108 396.0 268 70.5
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 1.9e-107 393.7 280 72.5
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 5.1e-105 385.6 350 55.7
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 5.9e-101 372.1 243 78.6
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 7.7e-101 371.7 345 55.1
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 3.2e-99 366.3 321 62.3
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 6.1e-98 362.1 349 55.0
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 3.5e-93 346.3 247 69.2
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 2.2e-92 343.6 300 62.3
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 2.2e-87 327.0 334 52.1
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 5.0e-84 315.8 202 76.7
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 6.5e-84 315.5 288 57.3
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 1.9e-83 313.9 285 58.6
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 2.2e-76 290.4 293 57.7
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 8.0e-74 282.0 277 60.3
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 2.8e-71 273.5 320 51.9
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 5.4e-70 269.2 288 49.0
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 5.5e-67 259.2 283 50.5
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 1.6e-66 257.7 186 69.4
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 5.2e-65 252.7 239 62.8
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 4.4e-64 249.6 351 40.2
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 9.2e-62 241.9 171 71.3
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 2.5e-51 207.2 197 55.3
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 1.4e-41 174.9 196 56.1
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 3.2e-38 163.7 391 33.0
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 8.4e-31 139.0 121 62.8
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 5.4e-30 136.3 83 72.3
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 2.1e-26 124.4 76 75.0
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 1.4e-25 121.7 85 72.9
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 1.4e-22 111.7 74 74.3
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 2.3e-20 104.4 74 70.3
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 6.6e-20 102.8 60 81.7
BraA03t12871Z Brassica rapa HOM05D000087 ORTHO05D014109 1.4e-14 85.1 104 51.9
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 1.4e-14 85.1 99 47.5
C09p73300 Brassica napus HOM05D005239 ORTHO05D014109 1.9e-14 84.7 85 58.8
BolC7t43881H Brassica oleracea HOM05D000087 ORTHO05D014109 3.2e-14 84.0 92 54.3
BcaC06g34014 Brassica carinata HOM05D000087 ORTHO05D014109 4.2e-14 83.6 85 57.6
C03p18880 Brassica napus HOM05D000087 ORTHO05D014109 1.2e-13 82.0 85 57.6
SEGI_27712 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 3.3e-11 73.9 58 65.5
SHI13676 Sapria himalayana HOM05D005239 ORTHO05D006698 1.6e-10 71.6 76 53.9


User provided reference genes

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