Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 2.7e-61 238.4 115 100.0
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 6.8e-57 223.8 116 94.0
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 6.4e-55 217.2 115 88.7
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 4.2e-54 214.5 115 87.8
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 5.4e-54 214.2 115 87.8
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 9.3e-54 213.4 115 87.8
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 2.1e-53 212.2 113 88.5
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 2.7e-53 211.8 115 87.8
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 2.7e-53 211.8 115 87.8
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 4.6e-53 211.1 115 87.0
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 4.6e-53 211.1 115 87.0
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 4.6e-53 211.1 115 86.1
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 3.3e-51 204.9 115 86.1
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 7.3e-51 203.8 110 89.1
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 9.6e-51 203.4 118 83.1
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 1.6e-50 202.6 110 88.2
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 2.1e-50 202.2 115 83.5
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 4.8e-50 201.1 115 84.3
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 1.1e-49 199.9 115 82.6
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 1.1e-49 199.9 115 82.6
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 1.1e-49 199.9 115 82.6
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 2.4e-49 198.7 117 81.2
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 2.4e-49 198.7 117 81.2
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 2.4e-49 198.7 115 81.7
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 9.0e-49 196.8 114 85.1
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 9.0e-49 196.8 114 85.1
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 1.5e-48 196.1 115 80.9
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 2.0e-48 195.7 115 80.9
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 4.4e-48 194.5 114 84.2
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 7.6e-48 193.7 107 86.0
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 7.6e-48 193.7 107 86.0
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 4.9e-47 191.0 106 83.0
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 7.1e-46 187.2 103 84.5
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 6.0e-45 184.1 113 77.9
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 6.0e-45 184.1 114 78.1
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 3.9e-44 181.4 116 75.0
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 2.5e-43 178.7 116 73.3
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 2.5e-43 178.7 92 87.0
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 1.3e-42 176.4 118 72.0
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 1.3e-42 176.4 115 73.9
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 1.3e-42 176.4 118 71.2
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 4.8e-42 174.5 117 70.1
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 4.8e-42 174.5 98 79.6
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 6.2e-42 174.1 114 71.1
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 1.1e-41 173.3 119 69.7
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 1.4e-41 172.9 99 80.8
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 1.4e-41 172.9 112 72.3
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 1.8e-41 172.6 95 81.1
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 1.8e-41 172.6 118 72.0
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 1.8e-41 172.6 118 72.0
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 1.8e-41 172.6 111 73.0
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 2.4e-41 172.2 118 70.3
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 3.1e-41 171.8 108 76.9
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 4.0e-41 171.4 98 78.6
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 6.9e-41 170.6 112 71.4
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 6.9e-41 170.6 113 72.6
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 6.9e-41 170.6 115 71.3
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 6.9e-41 170.6 116 68.1
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 9.0e-41 170.2 117 70.1
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 9.0e-41 170.2 96 81.2
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.2e-40 169.9 98 77.6
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.5e-40 169.5 98 77.6
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 1.5e-40 169.5 98 77.6
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 1.5e-40 169.5 110 72.7
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 2.0e-40 169.1 119 69.7
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 2.0e-40 169.1 110 70.9
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 2.6e-40 168.7 112 72.3
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 4.5e-40 167.9 91 82.4
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 5.8e-40 167.5 95 82.1
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 7.6e-40 167.2 105 75.2
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 7.6e-40 167.2 105 75.2
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 9.9e-40 166.8 116 69.8
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 9.9e-40 166.8 119 68.9
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 9.9e-40 166.8 115 72.2
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 1.3e-39 166.4 117 69.2
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 1.7e-39 166.0 91 82.4
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.7e-39 166.0 102 77.5
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.7e-39 166.0 111 70.3
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.2e-39 165.6 103 78.6
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 2.9e-39 165.2 106 76.4
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 2.9e-39 165.2 93 77.4
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 3.8e-39 164.9 110 70.0
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 3.8e-39 164.9 96 80.2
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 3.8e-39 164.9 98 75.5
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 4.9e-39 164.5 102 79.4
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 6.4e-39 164.1 110 71.8
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 6.4e-39 164.1 110 71.8
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 8.4e-39 163.7 104 76.0
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 8.4e-39 163.7 102 75.5
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.1e-38 163.3 115 68.7
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.1e-38 163.3 117 66.7
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.4e-38 162.9 109 70.6
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 1.4e-38 162.9 119 67.2
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 1.4e-38 162.9 111 70.3
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 2.4e-38 162.2 118 68.6
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 4.2e-38 161.4 117 69.2
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 5.5e-38 161.0 118 66.1
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 1.2e-37 159.8 112 70.5
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 1.6e-37 159.5 114 67.5
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 1.6e-37 159.5 114 67.5
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.6e-37 159.5 110 71.8
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 2.1e-37 159.1 106 69.8
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 2.1e-37 159.1 104 74.0
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 2.7e-37 158.7 110 70.9
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 3.5e-37 158.3 105 72.4
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 3.5e-37 158.3 108 72.2
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 4.6e-37 157.9 113 65.5
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 4.6e-37 157.9 111 66.7
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 6.0e-37 157.5 112 65.2
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 6.0e-37 157.5 112 65.2
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 6.0e-37 157.5 103 73.8
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 6.0e-37 157.5 86 80.2
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 7.9e-37 157.1 118 65.3
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 1.0e-36 156.8 108 71.3
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 1.0e-36 156.8 108 71.3
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 1.3e-36 156.4 109 68.8
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 1.3e-36 156.4 111 65.8
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.3e-36 155.6 115 65.2
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 3.0e-36 155.2 111 65.8
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 3.9e-36 154.8 112 67.0
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 5.1e-36 154.5 107 66.4
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 5.1e-36 154.5 86 76.7
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 5.1e-36 154.5 117 66.7
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 6.7e-36 154.1 118 62.7
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 6.7e-36 154.1 102 71.6
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 6.7e-36 154.1 104 69.2
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 6.7e-36 154.1 110 70.0
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 6.7e-36 154.1 106 69.8
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 8.7e-36 153.7 115 65.2
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 1.1e-35 153.3 90 74.4
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 1.9e-35 152.5 117 63.2
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 5.6e-35 151.0 83 81.9
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 4.8e-34 147.9 77 83.1
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 6.2e-34 147.5 98 69.4
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 2.0e-32 142.5 117 59.0
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 3.4e-32 141.7 84 72.6
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 4.5e-32 141.4 117 58.1
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 7.9e-29 130.6 82 76.8
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.8e-28 129.4 78 69.2
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.9e-27 125.9 78 67.9
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 3.3e-27 125.2 120 54.2
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 5.7e-27 124.4 65 92.3
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 2.6e-24 115.5 78 67.9
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 1.1e-22 110.2 103 57.3
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 1.0e-20 103.6 69 68.1
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 8.7e-20 100.5 106 47.2
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.3e-18 96.7 113 54.0
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 1.3e-18 96.7 70 71.4
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 1.3e-18 96.7 82 54.9
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 3.7e-18 95.1 77 63.6
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 1.8e-17 92.8 109 47.7
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 2.4e-17 92.4 53 77.4
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 2.5e-14 82.4 73 50.7
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 8.8e-12 73.9 71 47.9
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 2.5e-11 72.4 64 53.1
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 7.7e-08 60.8 47 63.8
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 8.5e-07 57.4 56 48.2


User provided reference genes

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