Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 1.3e-117 426.4 223 100.0
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 9.7e-108 393.7 226 90.7
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 1.7e-107 392.9 228 92.1
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 8.2e-107 390.6 226 90.3
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 8.2e-107 390.6 226 90.3
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 1.1e-106 390.2 226 89.8
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 1.8e-106 389.4 227 89.9
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 4.1e-106 388.3 227 89.9
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 6.9e-106 387.5 226 89.4
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 1.2e-105 386.7 227 89.0
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 1.2e-105 386.7 226 89.4
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 1.2e-105 386.7 226 89.4
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 1.2e-105 386.7 227 89.4
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 1.2e-105 386.7 226 89.4
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 1.2e-105 386.7 227 89.0
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 1.5e-105 386.3 226 88.9
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 3.4e-105 385.2 226 88.9
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 3.4e-105 385.2 226 88.9
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 4.5e-105 384.8 226 88.5
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 1.0e-104 383.6 227 88.5
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 2.2e-104 382.5 227 88.1
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 2.9e-104 382.1 225 88.9
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 5.0e-104 381.3 227 88.1
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 8.5e-104 380.6 227 87.7
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 8.5e-104 380.6 227 87.7
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 8.5e-104 380.6 232 87.1
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 1.9e-103 379.4 229 88.2
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 2.5e-103 379.0 227 87.2
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 2.5e-103 379.0 235 85.5
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 3.2e-103 378.6 224 88.8
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 3.2e-103 378.6 231 86.6
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 4.2e-103 378.3 226 86.7
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 5.5e-103 377.9 230 86.1
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 5.5e-103 377.9 229 86.0
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.7e-102 375.6 229 86.0
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 4.7e-102 374.8 231 84.8
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 4.7e-102 374.8 227 86.8
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 4.7e-102 374.8 229 85.6
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 4.7e-102 374.8 226 88.1
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 4.7e-102 374.8 229 84.3
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 6.1e-102 374.4 228 84.6
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 6.1e-102 374.4 231 84.8
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 7.9e-102 374.0 226 86.3
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 7.9e-102 374.0 224 87.1
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.8e-101 372.9 227 85.9
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 2.3e-101 372.5 227 85.5
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 3.0e-101 372.1 227 85.5
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 3.0e-101 372.1 225 85.8
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 3.0e-101 372.1 229 83.8
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 3.9e-101 371.7 226 86.3
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 3.9e-101 371.7 227 85.9
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 3.9e-101 371.7 227 85.0
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 3.9e-101 371.7 224 87.1
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 5.1e-101 371.3 227 85.5
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 6.7e-101 370.9 234 82.5
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 6.7e-101 370.9 222 84.7
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 8.8e-101 370.5 224 85.7
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 1.1e-100 370.2 222 86.0
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 1.5e-100 369.8 227 85.5
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 2.0e-100 369.4 224 86.2
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 2.6e-100 369.0 209 90.4
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 2.6e-100 369.0 230 84.3
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 2.6e-100 369.0 227 84.6
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 2.6e-100 369.0 232 83.6
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 2.6e-100 369.0 225 85.3
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 2.6e-100 369.0 229 83.4
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 3.3e-100 368.6 229 83.8
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 4.4e-100 368.2 230 84.3
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 4.4e-100 368.2 224 86.6
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 4.4e-100 368.2 224 86.6
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 5.7e-100 367.9 230 82.2
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 5.7e-100 367.9 227 85.0
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 5.7e-100 367.9 231 81.4
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 7.4e-100 367.5 230 82.2
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 7.4e-100 367.5 223 87.0
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 7.4e-100 367.5 227 86.8
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 9.7e-100 367.1 223 84.8
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 1.3e-99 366.7 225 85.8
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.3e-99 366.7 231 84.8
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 1.7e-99 366.3 230 83.0
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 2.2e-99 365.9 229 84.3
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 2.8e-99 365.5 225 84.9
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 2.8e-99 365.5 231 81.4
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 3.7e-99 365.2 233 83.7
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 6.3e-99 364.4 227 85.0
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 8.2e-99 364.0 227 83.7
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 1.8e-98 362.8 225 85.3
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 4.1e-98 361.7 227 83.3
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 5.3e-98 361.3 256 76.6
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 5.3e-98 361.3 206 89.8
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 7.0e-98 360.9 231 81.0
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 1.2e-97 360.1 227 82.4
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 1.2e-97 360.1 229 81.2
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 1.2e-97 360.1 231 80.5
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 1.6e-97 359.8 228 82.9
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 2.0e-97 359.4 231 82.3
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 4.5e-97 358.2 222 86.0
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 1.0e-96 357.1 231 80.1
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 1.7e-96 356.3 229 81.7
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 2.2e-96 355.9 216 85.6
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 2.9e-96 355.5 224 81.2
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 6.5e-96 354.4 203 90.1
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 6.5e-96 354.4 208 87.5
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 8.5e-96 354.0 232 79.3
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 3.2e-95 352.1 207 88.4
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 4.2e-95 351.7 220 81.4
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 1.2e-94 350.1 229 79.9
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 2.7e-94 349.0 224 81.7
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 6.1e-94 347.8 224 78.6
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 2.6e-92 342.4 218 78.4
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 7.5e-92 340.9 228 78.1
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 6.3e-91 337.8 300 65.3
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 7.7e-89 330.9 233 76.4
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 3.6e-86 322.0 192 85.9
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 1.1e-82 310.5 214 73.8
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 1.1e-82 310.5 212 75.9
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 1.7e-80 303.1 224 71.4
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 2.8e-75 285.8 209 71.3
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 8.3e-75 284.3 179 85.5
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 8.3e-75 284.3 190 81.6
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 3.5e-73 278.9 161 90.1
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 1.0e-72 277.3 194 76.8
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 3.8e-72 275.4 157 91.1
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 8.6e-72 274.2 157 91.1
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 1.9e-71 273.1 157 90.4
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 2.8e-70 269.2 157 89.2
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 4.7e-70 268.5 174 79.3
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 8.0e-70 267.7 192 77.6
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 1.8e-69 266.5 180 75.6
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.8e-68 260.8 186 73.7
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 4.1e-66 255.4 161 83.2
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 1.4e-58 230.3 167 73.1
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 4.9e-51 205.3 124 84.7
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 9.2e-50 201.1 175 66.3
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 5.4e-42 175.3 109 85.3
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 1.6e-41 173.7 103 87.4
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 4.3e-39 165.6 102 87.3
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.4e-34 150.6 157 54.8
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 8.7e-32 141.4 87 85.1
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 7.6e-28 128.3 79 78.5
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 3.5e-25 119.4 206 38.3
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 1.3e-22 110.9 57 94.7
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 1.3e-22 110.9 78 74.4
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 1.8e-16 90.5 66 69.7
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 3.9e-16 89.4 63 73.0
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 1.9e-15 87.0 65 67.7
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 1.1e-10 71.2 50 72.0


User provided reference genes

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