Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 1.4e-201 706.1 356 100.0
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 7.0e-177 624.0 349 88.8
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 7.0e-177 624.0 356 88.8
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 1.0e-175 620.2 356 87.4
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 1.0e-175 620.2 356 87.6
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 1.3e-175 619.8 356 87.4
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 1.3e-175 619.8 356 87.4
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 1.3e-175 619.8 356 87.4
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 1.7e-175 619.4 356 87.6
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 2.3e-175 619.0 356 87.6
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 1.6e-173 612.8 376 82.7
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 6.2e-173 610.9 361 85.6
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 6.0e-168 594.3 357 84.9
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 3.9e-167 591.7 351 84.3
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 1.6e-165 586.3 351 83.2
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 9.2e-161 570.5 362 79.3
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 1.2e-160 570.1 349 80.5
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 2.1e-160 569.3 357 78.7
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 1.0e-159 567.0 354 79.7
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 1.7e-159 566.2 354 78.2
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 8.6e-159 563.9 354 79.1
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 1.1e-158 563.5 351 78.1
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 5.6e-158 561.2 353 79.3
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 7.3e-158 560.8 348 80.5
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 7.3e-158 560.8 348 80.2
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 4.7e-157 558.1 362 78.2
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 6.2e-157 557.8 352 78.4
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 3.1e-156 555.4 356 76.4
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 6.8e-156 554.3 352 77.8
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 2.6e-155 552.4 349 78.8
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 3.4e-155 552.0 351 76.6
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 5.8e-155 551.2 354 78.0
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 7.6e-155 550.8 353 78.5
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 9.9e-155 550.4 354 77.4
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 9.9e-155 550.4 352 77.6
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 9.9e-155 550.4 356 77.5
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 9.9e-155 550.4 346 77.7
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 2.2e-154 549.3 351 76.9
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 4.9e-154 548.1 348 77.3
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 6.4e-154 547.7 351 75.8
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 1.1e-153 547.0 349 79.1
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.4e-153 546.6 349 77.4
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 1.9e-153 546.2 354 78.8
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 2.4e-153 545.8 346 76.0
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 5.4e-153 544.7 349 77.1
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 7.1e-153 544.3 346 75.7
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.6e-152 543.1 349 76.8
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 2.1e-152 542.7 345 77.1
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 2.7e-152 542.3 351 76.4
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 2.7e-152 542.3 353 77.9
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 1.3e-151 540.0 349 75.4
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 3.0e-151 538.9 349 77.7
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.5e-150 536.6 351 76.1
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 4.3e-150 535.0 358 75.4
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 1.6e-149 533.1 340 77.1
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 1.1e-148 530.4 351 76.6
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 4.0e-148 528.5 349 73.9
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 6.9e-148 527.7 349 75.6
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 3.4e-147 525.4 350 75.4
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 3.4e-147 525.4 350 75.1
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 4.4e-147 525.0 351 73.2
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 5.8e-147 524.6 351 73.2
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 1.7e-146 523.1 341 77.4
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 1.7e-146 523.1 302 88.4
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 3.8e-146 521.9 350 73.7
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 4.9e-146 521.5 346 72.8
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 1.4e-145 520.0 341 75.1
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 1.9e-145 519.6 347 73.8
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 4.2e-145 518.5 349 74.8
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 1.6e-144 516.5 351 74.9
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 4.6e-144 515.0 346 74.3
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 4.6e-144 515.0 340 74.4
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 2.3e-143 512.7 375 68.8
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 2.3e-143 512.7 352 73.3
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 3.0e-143 512.3 342 72.2
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 3.9e-143 511.9 344 75.3
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 8.7e-143 510.8 344 72.7
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.6e-141 506.5 358 71.5
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 1.1e-140 503.8 341 73.6
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 1.4e-140 503.4 340 73.2
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 1.5e-139 500.0 294 81.6
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 4.5e-139 498.4 361 68.1
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 9.9e-139 497.3 342 71.6
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 2.7e-136 489.2 347 68.0
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 7.9e-136 487.6 376 67.8
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 1.0e-135 487.3 351 69.5
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.8e-135 486.5 351 70.9
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 3.0e-135 485.7 347 70.9
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 1.6e-133 479.9 341 72.4
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.5e-131 473.4 341 73.3
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 4.5e-131 471.9 254 89.8
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 7.6e-131 471.1 302 79.5
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 1.3e-130 470.3 382 65.4
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 4.9e-130 468.4 328 73.8
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 4.9e-130 468.4 341 72.4
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 6.5e-130 468.0 338 72.5
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 3.2e-129 465.7 254 89.0
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 5.5e-129 464.9 297 79.1
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 2.1e-128 463.0 388 63.1
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 3.5e-128 462.2 300 73.7
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 5.1e-127 458.4 313 72.5
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 1.1e-126 457.2 325 70.8
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 1.5e-126 456.8 341 65.7
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.1e-124 450.7 343 69.1
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 1.8e-124 449.9 280 75.7
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 5.3e-124 448.4 292 72.3
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 5.3e-124 448.4 365 64.9
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 4.2e-121 438.7 325 70.2
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 6.7e-119 431.4 317 68.8
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 5.7e-118 428.3 296 72.0
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 2.8e-117 426.0 296 72.3
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 1.4e-113 413.7 356 61.5
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 2.0e-110 403.3 296 68.6
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 2.5e-110 402.9 305 68.5
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 5.3e-108 395.2 259 79.2
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 1.3e-106 390.6 351 56.4
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 2.9e-106 389.4 399 57.9
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 1.9e-105 386.7 342 56.4
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 1.0e-103 380.9 230 79.1
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 6.7e-103 378.3 252 77.4
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 2.0e-102 376.7 266 72.9
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 1.2e-99 367.5 261 73.2
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 5.0e-98 362.1 252 75.4
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 1.2e-96 357.5 335 54.6
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 4.7e-96 355.5 340 53.5
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 2.0e-94 350.1 190 88.9
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 3.3e-94 349.4 309 61.2
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 5.3e-92 342.0 231 76.6
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 5.5e-89 332.0 222 75.7
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 1.4e-87 327.4 263 58.6
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 2.2e-82 310.1 318 49.4
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 2.3e-79 300.1 257 61.9
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 3.4e-78 296.2 227 68.3
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 1.8e-76 290.4 195 73.3
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 2.5e-73 280.0 166 87.3
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 7.8e-59 231.9 191 63.9
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 2.1e-56 223.8 364 40.4
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 1.1e-49 201.4 178 64.0
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 5.2e-39 166.0 98 80.6
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 1.5e-33 147.9 73 89.0
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 1.5e-33 147.9 73 89.0
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 1.9e-33 147.5 73 87.7
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 2.5e-33 147.1 73 90.4
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 4.3e-33 146.4 74 89.2
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 1.6e-27 127.9 63 90.5
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 1.9e-25 120.9 95 67.4
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 2.8e-24 117.1 136 50.7
HanXRQChr05g0134321 Helianthus annuus HOM05D004887 ORTHO05D025733 1.1e-07 62.0 50 58.0
HanXRQChr07g0192801 Helianthus annuus HOM05D004887 ORTHO05D225384 4.1e-07 60.1 55 60.0
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 4.1e-07 60.1 40 72.5


User provided reference genes

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