Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 0.0e+00 1217.2 611 100.0
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 9.0e-257 890.2 609 75.4
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 2.0e-256 889.0 601 76.2
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 2.6e-256 888.6 604 75.3
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 1.0e-255 886.7 601 76.0
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 2.9e-255 885.2 609 75.2
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 8.5e-255 883.6 609 75.0
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 9.3e-254 880.2 604 74.2
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 4.6e-253 877.9 601 74.9
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 1.1e-251 873.2 601 74.4
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 2.8e-250 868.6 614 73.5
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 6.7e-244 847.4 591 74.5
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 1.8e-241 839.3 589 73.7
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 2.0e-240 835.9 590 73.6
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 1.3e-231 806.6 592 67.2
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 2.0e-227 792.7 521 77.0
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 2.7e-224 782.3 603 64.2
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 7.7e-224 780.8 597 66.3
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 8.8e-220 767.3 530 74.5
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 2.6e-219 765.8 585 65.1
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 1.3e-218 763.5 603 63.8
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.4e-217 759.2 581 64.2
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 7.0e-217 757.7 581 62.7
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 1.7e-215 753.1 591 63.8
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 2.3e-215 752.7 596 62.9
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 3.3e-214 748.8 603 63.2
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 1.0e-212 743.8 601 66.7
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 3.0e-212 742.3 604 63.1
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 5.2e-212 741.5 604 63.1
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 6.8e-212 741.1 604 63.1
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 1.3e-210 736.9 604 60.8
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 2.8e-210 735.7 602 62.0
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 2.4e-209 732.6 628 60.5
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 5.4e-209 731.5 595 61.7
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 1.2e-208 730.3 596 60.7
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 5.9e-208 728.0 604 62.3
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 7.8e-208 727.6 594 61.1
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 2.3e-207 726.1 590 61.7
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 5.0e-207 724.9 601 61.2
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 5.0e-207 724.9 603 61.0
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.4e-204 716.8 584 61.3
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 4.0e-204 715.3 599 62.1
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 6.8e-204 714.5 595 60.5
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 8.9e-204 714.1 605 59.5
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 1.5e-203 713.4 605 59.3
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 2.6e-203 712.6 584 60.6
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 3.4e-203 712.2 590 60.7
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 4.4e-203 711.8 585 60.3
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 1.7e-202 709.9 602 60.3
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 1.7e-202 709.9 600 61.0
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 8.3e-202 707.6 573 60.9
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 7.0e-201 704.5 590 59.5
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 6.0e-200 701.4 604 59.1
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 7.8e-200 701.0 602 58.8
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 3.0e-199 699.1 598 58.7
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 3.0e-199 699.1 594 58.6
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 6.6e-199 698.0 592 58.6
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 2.5e-198 696.0 592 58.4
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 9.5e-198 694.1 597 58.5
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 9.5e-198 694.1 594 59.9
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 1.6e-197 693.3 514 66.1
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 3.6e-197 692.2 588 60.7
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 8.0e-197 691.0 594 57.9
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.3e-196 689.5 610 57.5
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 2.3e-196 689.5 608 58.6
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 3.1e-196 689.1 613 59.5
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.1e-196 689.1 605 58.0
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 2.6e-195 686.0 518 64.3
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 2.2e-194 682.9 611 57.3
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 2.2e-194 682.9 606 57.8
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 6.4e-194 681.4 604 59.1
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 8.3e-194 681.0 585 58.5
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 5.4e-193 678.3 599 57.4
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 9.2e-193 677.6 579 58.7
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 2.1e-192 676.4 607 56.7
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 9.5e-190 667.5 788 47.7
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 6.2e-189 664.8 595 58.0
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 8.1e-189 664.5 589 58.4
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 1.4e-188 663.7 516 61.6
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 2.3e-188 662.9 584 58.0
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 4.4e-187 658.7 580 56.9
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 5.8e-187 658.3 611 55.3
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 2.1e-184 649.8 598 57.9
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 3.9e-183 645.6 659 52.5
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 2.9e-178 629.4 611 53.5
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 2.4e-177 626.3 565 57.0
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 3.5e-176 622.5 572 56.5
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.7e-175 620.2 550 58.5
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 1.9e-169 600.1 615 53.2
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 1.7e-167 593.6 485 59.6
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 1.3e-162 577.4 588 51.9
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.4e-156 557.4 636 49.7
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.4e-156 557.4 614 49.7
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.9e-150 537.0 356 73.6
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 1.9e-145 520.4 469 56.7
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 5.5e-145 518.8 601 45.3
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 3.3e-134 483.0 614 45.3
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 7.7e-123 445.3 393 56.7
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 6.1e-120 435.6 534 42.9
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 8.0e-120 435.3 444 49.5
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 3.0e-119 433.3 534 44.9
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.2e-110 404.8 565 40.2
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 4.4e-110 402.9 304 64.1
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 5.7e-110 402.5 506 43.1
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 7.5e-102 375.6 332 56.6
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 5.6e-81 306.2 263 57.8
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 1.7e-77 294.7 216 67.6
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 2.8e-72 277.3 398 41.2
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 4.0e-71 273.5 216 63.4
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 5.8e-70 269.6 601 30.3
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 7.5e-70 269.2 278 50.4
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 2.4e-68 264.2 360 38.3
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.6e-64 251.5 293 42.7
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 1.5e-62 245.0 181 67.4
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 8.4e-45 186.0 168 56.0
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 6.9e-39 166.4 112 65.2
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 2.2e-37 161.4 125 66.4
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 4.2e-36 157.1 123 58.5
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 4.8e-32 143.7 94 73.4
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.6e-27 128.6 249 35.7
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 7.9e-27 126.3 109 57.8
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 1.6e-24 118.6 554 24.0
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.8e-24 117.9 105 54.3
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 6.3e-24 116.7 98 56.1
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 1.4e-23 115.5 216 35.2
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.8e-23 115.2 151 41.7
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 1.0e-21 109.4 85 55.3
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 5.5e-20 103.6 75 61.3
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 2.7e-19 101.3 126 46.0
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 6.1e-19 100.1 72 61.1
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 1.4e-18 99.0 124 45.2
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 5.7e-17 93.6 126 39.7
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 2.6e-14 84.7 87 43.7
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 6.5e-13 80.1 175 35.4
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.1e-12 79.3 150 33.3
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 1.8e-10 72.0 58 46.6
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 2.0e-09 68.6 47 57.4
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 2.2e-08 65.1 138 34.8
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 2.8e-08 64.7 58 56.9
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 1.1e-07 62.8 249 24.1
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 9.1e-07 59.7 62 51.6
Lsat_1_v5_gn_2_76440 Lactuca sativa HOM05D000807 ORTHO05D000662 1.2e-06 59.3 35 65.7
AL3G48430 Arabidopsis lyrata HOM05D000229 ORTHO05D016563 2.0e-06 58.5 35 71.4
Oeu032047.1 Olea europaea HOM05D005072 ORTHO05D006209 7.7e-06 56.6 74 48.6


User provided reference genes

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