Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104799080 Tarenaya hassleriana HOM05D000875 ORTHO05D000684 1.3e-42 176.0 91 100.0
THA.LOC104804548 Tarenaya hassleriana HOM05D000875 ORTHO05D000684 3.8e-34 147.9 79 96.2
BolC2t06393H Brassica oleracea HOM05D000875 ORTHO05D000684 2.3e-23 112.1 97 64.9
Sp6g33250 Schrenkiella parvula HOM05D000875 ORTHO05D000684 8.7e-23 110.2 94 68.1
A02p00350 Brassica napus HOM05D000875 ORTHO05D000684 1.5e-22 109.4 97 63.9
BraA02t05020Z Brassica rapa HOM05D000875 ORTHO05D000684 1.5e-22 109.4 97 63.9
BcaC03g13298 Brassica carinata HOM05D000875 ORTHO05D000684 7.4e-22 107.1 97 62.9
C02p04290 Brassica napus HOM05D000875 ORTHO05D000684 7.4e-22 107.1 97 62.9
Aa31LG3G16990 Aethionema arabicum HOM05D000875 ORTHO05D000684 1.6e-21 105.9 88 67.0
CiPaw.03G139700 Carya illinoinensis HOM05D000875 ORTHO05D000684 6.3e-21 104.0 84 64.3
AL6G20610 Arabidopsis lyrata HOM05D000875 ORTHO05D000684 1.4e-20 102.8 94 63.8
AL6G20640 Arabidopsis lyrata HOM05D000875 ORTHO05D000684 1.4e-20 102.8 94 63.8
AT5G10150 Arabidopsis thaliana HOM05D000875 ORTHO05D000684 1.4e-20 102.8 93 63.4
Carub.0006s0861 Capsella rubella HOM05D000875 ORTHO05D000684 3.1e-20 101.7 93 62.4
Cfa002690 Carpinus fangiana HOM05D000875 ORTHO05D000684 4.1e-20 101.3 87 64.4
Thhalv10013690m.g Eutrema salsugineum HOM05D000875 ORTHO05D000684 6.9e-20 100.5 84 66.7
CARHR203140 Cardamine hirsuta HOM05D000875 ORTHO05D000684 3.4e-19 98.2 91 59.3
Duzib147G1235 Durio zibethinus HOM05D000875 ORTHO05D000684 7.6e-19 97.1 82 65.9
TAR628G1378 Trochodendron aralioides HOM05D000875 ORTHO05D000684 5.0e-18 94.4 81 59.3
Prupe.6G181200 Prunus persica HOM05D000875 ORTHO05D000684 6.5e-18 94.0 91 56.0
Manes.12G137400 Manihot esculenta HOM05D000875 ORTHO05D000684 1.1e-17 93.2 85 58.8
Atru.chr4.148 Acer truncatum HOM05D000875 ORTHO05D000684 2.5e-17 92.0 85 60.0
Atru.chr4.160 Acer truncatum HOM05D000875 ORTHO05D000684 2.5e-17 92.0 85 60.0
COL.COLO4_09925 Corchorus olitorius HOM05D000875 ORTHO05D000684 2.5e-17 92.0 84 61.9
Thecc.01G105100 Theobroma cacao HOM05D000875 ORTHO05D000684 5.5e-17 90.9 80 65.0
Potri.005G078300 Populus trichocarpa HOM05D000875 ORTHO05D000684 2.1e-16 89.0 83 56.6
Duzib264G0516 Durio zibethinus HOM05D000875 ORTHO05D000684 2.7e-16 88.6 83 59.0
Nn5g29044 Nelumbo nucifera HOM05D000875 ORTHO05D000684 2.7e-16 88.6 87 52.9
GSVIVG01006373001 Vitis vinifera HOM05D000875 ORTHO05D000684 4.6e-16 87.8 87 56.3
QL06p050072 Quercus lobata HOM05D000875 ORTHO05D000684 7.9e-16 87.0 85 57.6
Dinv16307 Davidia involucrata HOM05D000875 ORTHO05D000684 1.0e-15 86.7 83 57.8
FAN26G3100 Fragaria x ananassa HOM05D000875 ORTHO05D000684 1.0e-15 86.7 81 58.0
Actinidia28873 Actinidia chinensis HOM05D000875 ORTHO05D000684 1.8e-15 85.9 83 56.6
Ciclev10027553m.g Citrus clementina HOM05D000875 ORTHO05D000684 1.8e-15 85.9 88 53.4
RcHm_v2.0_Chr2g0115201 Rosa chinensis HOM05D000875 ORTHO05D000684 1.8e-15 85.9 94 53.2
Migut.L00105 Erythranthe guttata HOM05D000875 ORTHO05D000684 2.3e-15 85.5 87 55.2
FAN28G0079 Fragaria x ananassa HOM05D000875 ORTHO05D000684 2.3e-15 85.5 82 57.3
Hma1.2p1_0148F.1_g065990 Hydrangea macrophylla HOM05D000875 ORTHO05D000684 2.3e-15 85.5 83 59.0
PGSC0003DMG400020631 Solanum tuberosum HOM05D000875 ORTHO05D000684 2.3e-15 85.5 84 58.3
Lalb_Chr11g0075251 Lupinus albus HOM05D000875 ORTHO05D000684 3.0e-15 85.1 89 53.9
FvH4_1g21340 Fragaria vesca HOM05D000875 ORTHO05D000684 3.9e-15 84.7 82 57.3
FAN19G2733 Fragaria x ananassa HOM05D000875 ORTHO05D000684 3.9e-15 84.7 82 57.3
Nn1g05290 Nelumbo nucifera HOM05D000875 ORTHO05D000684 8.8e-15 83.6 83 56.6
Sabra05G0064300 Salix brachista HOM05D000875 ORTHO05D000684 8.8e-15 83.6 89 50.6
SalBow5G2150 Salvia bowleyana HOM05D000875 ORTHO05D000684 8.8e-15 83.6 86 50.0
SalBow5G4521 Salvia bowleyana HOM05D000875 ORTHO05D000684 8.8e-15 83.6 86 50.0
Nitab4.5_0005884g0030 Nicotiana tabacum HOM05D000875 ORTHO05D000684 1.5e-14 82.8 86 55.8
Gorai.007G241300 Gossypium raimondii HOM05D000875 ORTHO05D000684 2.5e-14 82.0 81 56.8
MD01G1025500 Malus domestica HOM05D000875 ORTHO05D000684 2.5e-14 82.0 82 58.5
Peaxi162Scf00422g00079 Petunia axillaris HOM05D000875 ORTHO05D000684 2.5e-14 82.0 84 56.0
Rhsim08G0009300 Rhododendron simsii HOM05D000875 ORTHO05D000684 4.3e-14 81.3 94 58.5
Solyc04g054800.3 Solanum lycopersicum HOM05D000875 ORTHO05D000684 4.3e-14 81.3 85 55.3
arahy.Tifrunner.gnm1.ann1.F33RZJ Arachis hypogaea HOM05D000875 ORTHO05D000684 5.7e-14 80.9 88 51.1
arahy.Tifrunner.gnm1.ann1.NGZW1R Arachis hypogaea HOM05D000875 ORTHO05D000684 5.7e-14 80.9 88 51.1
CAN.G972.1 Capsicum annuum HOM05D000875 ORTHO05D000684 5.7e-14 80.9 87 56.3
CSS0041026 Camellia sinensis var. sinensis HOM05D000875 ORTHO05D000684 7.4e-14 80.5 87 55.2
MBI05_g46940_MAGBIO Magnolia biondii HOM05D000875 ORTHO05D000684 7.4e-14 80.5 82 57.3
DCAR_011505 Daucus carota HOM05D000875 ORTHO05D000684 9.7e-14 80.1 95 51.6
Oeu045788.1 Olea europaea HOM05D000875 ORTHO05D000684 9.7e-14 80.1 85 54.1
Nitab4.5_0015601g0010 Nicotiana tabacum HOM05D000875 ORTHO05D000684 1.7e-13 79.3 87 54.0
PGR102G1328 Punica granatum HOM05D000875 ORTHO05D000684 1.7e-13 79.3 87 52.9
Sopen04g024600 Solanum pennellii HOM05D000875 ORTHO05D000684 1.7e-13 79.3 87 54.0
CANSAT01G1924 Cannabis sativa HOM05D000875 ORTHO05D000684 2.8e-13 78.6 91 52.7
Eucgr.I00418 Eucalyptus grandis HOM05D000875 ORTHO05D000684 4.8e-13 77.8 92 52.2
Dinv21930 Davidia involucrata HOM05D000875 ORTHO05D000684 1.1e-12 76.6 77 55.8
Cc07_g15510 Coffea canephora HOM05D000875 ORTHO05D000684 1.4e-12 76.3 84 54.8
TWI77G0844 Tripterygium wilfordii HOM05D000875 ORTHO05D000684 4.1e-12 74.7 86 51.2
Medtr8g091300 Medicago truncatula HOM05D000875 ORTHO05D000684 5.3e-12 74.3 86 53.5
Oeu051800.1 Olea europaea HOM05D000875 ORTHO05D000684 5.3e-12 74.3 75 57.3
Migut.H02383 Erythranthe guttata HOM05D000875 ORTHO05D000684 9.1e-12 73.6 84 56.0
MBI05_g06570_MAGBIO Magnolia biondii HOM05D000875 ORTHO05D000684 2.6e-11 72.0 82 53.7
Psat7g052920 Pisum sativum HOM05D000875 ORTHO05D000684 2.6e-11 72.0 85 52.9
TPR.G2242 Trifolium pratense HOM05D000875 ORTHO05D000684 2.6e-11 72.0 78 56.4
vmacro18611 Vaccinium macrocarpon HOM05D000875 ORTHO05D000684 2.6e-11 72.0 85 56.5
Lsat_1_v5_gn_5_42720 Lactuca sativa HOM05D000875 ORTHO05D000684 4.5e-11 71.2 76 55.3
FAN23G1715 Fragaria x ananassa HOM05D000875 ORTHO05D000684 5.9e-11 70.9 55 65.5
unitig_32.g10693 Utricularia gibba HOM05D000875 ORTHO05D000684 5.9e-11 70.9 81 50.6
CDE10G0827 Ceratophyllum demersum HOM05D000875 ORTHO05D000684 7.7e-11 70.5 82 51.2
HanXRQChr15g0470951 Helianthus annuus HOM05D000875 ORTHO05D000684 1.7e-10 69.3 47 70.2
Lj4A882T15 Lonicera japonica HOM05D000875 ORTHO05D000684 1.7e-10 69.3 54 70.4
Phvul.002G261900 Phaseolus vulgaris HOM05D000875 ORTHO05D000684 2.9e-10 68.6 94 47.9
ClCG07G009630 Citrullus lanatus HOM05D000875 ORTHO05D000684 5.0e-10 67.8 76 50.0
Lj4A884G23 Lonicera japonica HOM05D000875 ORTHO05D000684 5.0e-10 67.8 53 69.8
CDE10G0513 Ceratophyllum demersum HOM05D000875 ORTHO05D000684 1.1e-09 66.6 52 57.7
Ca_17717_v3 Cicer arietinum L. HOM05D000875 ORTHO05D000684 1.1e-09 66.6 82 52.4
ECA246G3652 Erigeron canadensis HOM05D000875 ORTHO05D000684 1.1e-09 66.6 76 51.3
Sc16g0005470 Simmondsia chinensis HOM05D000875 ORTHO05D000684 1.1e-09 66.6 102 45.1
Glyma.08G138500 Glycine max HOM05D000875 ORTHO05D000684 1.4e-09 66.2 78 51.3
Sed0009948 Sechium edule HOM05D000875 ORTHO05D000684 1.9e-09 65.9 97 44.3
CsaV3_4G004680 Cucumis sativus L. HOM05D000875 ORTHO05D000684 2.5e-09 65.5 53 60.4
Gohir.A11G200300 Gossypium hirsutum HOM05D000875 ORTHO05D000684 2.5e-09 65.5 52 63.5
Gohir.D11G223600 Gossypium hirsutum HOM05D000875 ORTHO05D000684 2.5e-09 65.5 52 63.5
SGA_v2.0_scaffold28G11898 Striga asiatica HOM05D000875 ORTHO05D000684 2.5e-09 65.5 84 50.0
VMungo0251G3232 Vigna mungo HOM05D000875 ORTHO05D000684 4.2e-09 64.7 94 43.6
MSTRG.3794 Avicennia marina HOM05D000875 ORTHO05D000684 5.5e-09 64.3 85 45.9
CsaV3_UNG218500 Cucumis sativus L. HOM05D000875 ORTHO05D000684 7.2e-09 63.9 51 60.8
unitig_747.g21823 Utricularia gibba HOM05D000875 ORTHO05D000684 9.4e-09 63.5 53 58.5
AUR62003768 Chenopodium quinoa HOM05D000875 ORTHO05D000684 2.7e-08 62.0 103 41.7
PSO541G4997 Papaver somniferum HOM05D000875 ORTHO05D000684 3.6e-08 61.6 70 51.4
Lj4g0014963 Lotus japonicus HOM05D000875 ORTHO05D000684 6.1e-08 60.8 91 47.3
PSO133G0057 Papaver somniferum HOM05D000875 ORTHO05D000684 6.1e-08 60.8 70 51.4
Potri.009G005800 Populus trichocarpa HOM05D000875 ORTHO05D000684 1.0e-07 60.1 77 42.9
Hund16269 Selenicereus undatus HOM05D000875 ORTHO05D000684 2.3e-07 58.9 108 38.0
CAN.G546.48 Capsicum annuum HOM05D000875 ORTHO05D000684 6.7e-07 57.4 78 50.0
Nn2g13840 Nelumbo nucifera HOM05D000875 ORTHO05D000684 1.5e-06 56.2 76 40.8
Haze_24962 Corylus avellana HOM05D000875 ORTHO05D000684 2.0e-06 55.8 74 44.6
AUR62002030 Chenopodium quinoa HOM05D000875 ORTHO05D000684 2.6e-06 55.5 62 48.4
Sabra09G0003100 Salix brachista HOM05D000875 ORTHO05D000684 2.6e-06 55.5 76 42.1
TPR.G28209 Trifolium pratense HOM05D000875 ORTHO05D000684 2.6e-06 55.5 76 44.7
EL10Ac6g15073 Beta vulgaris HOM05D000875 ORTHO05D000684 3.3e-06 55.1 65 44.6
Oeu008359.1 Olea europaea HOM05D000875 ORTHO05D000684 3.3e-06 55.1 72 45.8
Lj2g0009797 Lotus japonicus HOM05D000875 ORTHO05D000684 4.4e-06 54.7 76 43.4
Lj3g0002642 Lotus japonicus HOM05D000875 ORTHO05D000684 4.4e-06 54.7 76 43.4
Lj3g0028131 Lotus japonicus HOM05D000875 ORTHO05D000684 4.4e-06 54.7 76 43.4
Oeu008358.1 Olea europaea HOM05D000875 ORTHO05D000684 4.4e-06 54.7 72 45.8
Lj2g0025227 Lotus japonicus HOM05D000875 ORTHO05D000684 7.4e-06 53.9 71 42.3
Cc01_g10330 Coffea canephora HOM05D000875 ORTHO05D000684 9.7e-06 53.5 78 39.7
Nn6g35235 Nelumbo nucifera HOM05D000875 ORTHO05D000684 9.7e-06 53.5 80 38.8
Os03g0192300 Oryza sativa ssp. japonica HOM05D000875 ORTHO05D000684 9.7e-06 53.5 72 43.1


User provided reference genes

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