Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104798889 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 2.9e-90 335.9 271 100.0
Haze_03893 Corylus avellana HOM05D003210 ORTHO05D000001 1.2e-38 164.5 206 62.6
Sabra06G0098600 Salix brachista HOM05D003210 ORTHO05D000001 3.6e-32 142.9 272 47.4
FAN23G1801 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.4e-31 141.0 139 48.9
Cpa.g.sc10.84 Carica papaya HOM05D003210 ORTHO05D000001 7.5e-30 135.2 273 44.3
AL7G34260 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 1.0e-26 124.8 225 51.6
BcaC01g02795 Brassica carinata HOM05D003210 ORTHO05D032134 1.7e-26 124.0 206 51.9
COL.COLO4_27373 Corchorus olitorius HOM05D003210 ORTHO05D000001 3.9e-26 122.9 204 45.1
Prupe.4G256300 Prunus persica HOM05D003210 ORTHO05D000001 1.9e-25 120.6 206 35.9
FAN28G0230 Fragaria x ananassa HOM05D003210 ORTHO05D000001 7.3e-25 118.6 231 30.7
FAN26G1074 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.6e-24 117.5 229 30.1
Eucgr.H02438 Eucalyptus grandis HOM05D003210 ORTHO05D000001 8.1e-24 115.2 112 49.1
FAN26G0660 Fragaria x ananassa HOM05D000020 ORTHO05D000001 1.1e-23 114.8 167 48.5
FvH4_1g06430 Fragaria vesca HOM05D003210 ORTHO05D000001 1.8e-23 114.0 228 29.8
FAN19G0968 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.8e-23 114.0 228 29.8
RcHm_v2.0_Chr2g0092171 Rosa chinensis HOM05D003210 ORTHO05D000001 2.4e-23 113.6 228 29.8
FAN20G1808 Fragaria x ananassa HOM05D003210 ORTHO05D000001 7.6e-22 108.6 235 29.8
Glyma.09G200200 Glycine max HOM05D003210 ORTHO05D000001 9.9e-22 108.2 232 44.4
AL3G14030 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 3.8e-21 106.3 207 65.7
Prupe.1G583300 Prunus persica HOM05D003210 ORTHO05D000001 2.4e-20 103.6 220 40.5
Potri.006G124900 Populus trichocarpa HOM05D003210 ORTHO05D000001 3.2e-20 103.2 211 50.7
Glyma.01G021450 Glycine max HOM05D003210 ORTHO05D000001 5.4e-20 102.4 176 53.4
Phvul.002G145400 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 9.2e-20 101.7 172 58.1
Ca_25227_v3 Cicer arietinum L. HOM05D003210 ORTHO05D000001 4.6e-19 99.4 104 47.1
Aa31LG1G16470 Aethionema arabicum HOM05D003210 ORTHO05D000001 6.0e-19 99.0 72 58.3
RcHm_v2.0_Chr1g0329241 Rosa chinensis HOM05D003210 ORTHO05D000001 7.8e-19 98.6 211 29.9
Lalb_Chr09g0325941 Lupinus albus HOM05D003210 ORTHO05D000001 1.0e-18 98.2 101 45.5
FvH4_7g04271 Fragaria vesca HOM05D003210 ORTHO05D000001 1.3e-18 97.8 211 29.9
MD15G1441200 Malus domestica HOM05D003210 ORTHO05D000001 1.3e-18 97.8 210 28.1
MD08G1245900 Malus domestica HOM05D003210 ORTHO05D000001 2.3e-18 97.1 209 29.7
TPR.G36733 Trifolium pratense HOM05D003210 ORTHO05D000001 2.3e-18 97.1 102 49.0
FAN03G0748 Fragaria x ananassa HOM05D003210 ORTHO05D000001 3.9e-18 96.3 211 29.4
Manes.12G124600 Manihot esculenta HOM05D003210 ORTHO05D000001 6.6e-18 95.5 211 51.7
CARHR279540 Cardamine hirsuta HOM05D003210 ORTHO05D000001 1.5e-17 94.4 204 46.6
Sp2g28660 Schrenkiella parvula HOM05D003210 ORTHO05D000001 1.9e-17 94.0 205 30.2
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 3.3e-17 93.2 166 33.1
Atru.chr4.1465 Acer truncatum HOM05D003210 ORTHO05D000001 4.3e-17 92.8 75 57.3
AL8G43160 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 4.3e-17 92.8 205 29.8
Medtr5g031740 Medicago truncatula HOM05D003210 ORTHO05D000001 4.3e-17 92.8 95 47.4
AT5G65560 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 7.3e-17 92.0 205 29.8
Carub.0008s2641 Capsella rubella HOM05D003210 ORTHO05D000001 7.3e-17 92.0 205 31.2
Lj2g0010731 Lotus japonicus HOM05D003210 ORTHO05D000001 7.3e-17 92.0 99 45.5
CsaV3_6G031450 Cucumis sativus L. HOM05D003210 ORTHO05D000001 9.6e-17 91.7 215 50.2
Gohir.A12G085200 Gossypium hirsutum HOM05D003210 ORTHO05D000001 2.4e-15 87.0 211 48.8
Ciclev10018770m.g Citrus clementina HOM05D003210 ORTHO05D000001 4.0e-15 86.3 70 57.1
Gorai.008G093300 Gossypium raimondii HOM05D003210 ORTHO05D000001 4.0e-15 86.3 211 48.3
TWI53G0425 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 4.0e-15 86.3 212 40.1
TWI74G0121 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 1.2e-14 84.7 212 49.1
C03p60250 Brassica napus HOM05D003210 ORTHO05D000001 7.6e-14 82.0 56 71.4
BolC3t18286H Brassica oleracea HOM05D003210 ORTHO05D000001 7.6e-14 82.0 56 71.4
arahy.Tifrunner.gnm1.ann1.PFI7NN Arachis hypogaea HOM05D003210 ORTHO05D000001 1.7e-13 80.9 86 45.3
arahy.Tifrunner.gnm1.ann1.SQ2KUV Arachis hypogaea HOM05D003210 ORTHO05D000001 1.7e-13 80.9 86 45.3
PGR102G2337 Punica granatum HOM05D003210 ORTHO05D000001 1.7e-13 80.9 82 46.3
Phvul.008G101600 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 4.9e-13 79.3 212 39.6
FvH4_2g11090 Fragaria vesca HOM05D003210 ORTHO05D000001 6.4e-13 79.0 217 24.4
FAN24G1052 Fragaria x ananassa HOM05D003210 ORTHO05D000001 6.4e-13 79.0 217 24.4
Carub.0002s2422 Capsella rubella HOM05D003210 ORTHO05D000001 8.4e-13 78.6 72 48.6
CAN.G674.2 Capsicum annuum HOM05D003210 ORTHO05D000001 1.9e-12 77.4 184 36.4
MD11G1188000 Malus domestica HOM05D003210 ORTHO05D000001 1.2e-11 74.7 211 34.1
Aqoxy6G00832 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 1.6e-11 74.3 207 26.6
Thecc.01G088700 Theobroma cacao HOM05D003210 ORTHO05D000001 2.1e-11 73.9 71 46.5
AL2G37540 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 3.5e-11 73.2 130 40.8
Gohir.D12G079600 Gossypium hirsutum HOM05D003210 ORTHO05D000001 3.5e-11 73.2 78 42.3
MELO3C026530.2 Cucumis melo HOM05D003210 ORTHO05D000001 6.0e-11 72.4 89 44.9
QL12p037893 Quercus lobata HOM05D003210 ORTHO05D000001 6.0e-11 72.4 73 46.6
SHI21874 Sapria himalayana HOM05D003210 ORTHO05D000001 6.0e-11 72.4 204 30.4
Lalb_Chr19g0125341 Lupinus albus HOM05D003210 ORTHO05D000001 1.3e-10 71.2 212 46.7
Peaxi162Scf00370g00062 Petunia axillaris HOM05D003210 ORTHO05D000001 1.3e-10 71.2 185 44.3
PGSC0003DMG401028232 Solanum tuberosum HOM05D003210 ORTHO05D000001 1.7e-10 70.9 191 44.5
BcaC01g02798 Brassica carinata HOM05D003210 ORTHO05D000001 3.0e-10 70.1 205 26.8
C03p60210 Brassica napus HOM05D003210 ORTHO05D000001 3.0e-10 70.1 205 26.8
BolC3t18283H Brassica oleracea HOM05D003210 ORTHO05D000001 3.0e-10 70.1 205 26.8
Migut.H02282 Erythranthe guttata HOM05D003210 ORTHO05D000001 3.9e-10 69.7 205 42.0
Psat3g169880 Pisum sativum HOM05D003210 ORTHO05D000001 5.1e-10 69.3 185 44.3
Duzib264G1117 Durio zibethinus HOM05D003210 ORTHO05D000001 8.7e-10 68.6 73 47.9
BraA06t26165Z Brassica rapa HOM05D003210 ORTHO05D000001 1.5e-09 67.8 206 41.3
CDE09G0204 Ceratophyllum demersum HOM05D002986 ORTHO05D007611 1.9e-09 67.4 143 28.0
Nitab4.5_0000574g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 1.9e-09 67.4 184 47.3
Sabra11G0040100 Salix brachista HOM05D002986 ORTHO05D007611 1.9e-09 67.4 138 31.2
Nitab4.5_0002364g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 2.5e-09 67.0 184 47.3
VMungo1383G3073 Vigna mungo HOM05D003210 ORTHO05D000001 2.5e-09 67.0 146 55.5
CANSAT01G1059 Cannabis sativa HOM05D003210 ORTHO05D000001 3.3e-09 66.6 78 41.0
Sopen10g032390 Solanum pennellii HOM05D003210 ORTHO05D000001 4.3e-09 66.2 191 42.4
CiPaw.08G142200 Carya illinoinensis HOM05D003210 ORTHO05D000001 7.3e-09 65.5 71 40.8
Potri.011G057900 Populus trichocarpa HOM05D002986 ORTHO05D007611 7.3e-09 65.5 138 29.7
HPP92_009567 Vanilla planifolia HOM05D003210 ORTHO05D000001 7.3e-09 65.5 105 34.3
A06p32400 Brassica napus HOM05D003210 ORTHO05D000001 9.6e-09 65.1 206 39.8
ClCG08G009320 Citrullus lanatus HOM05D003210 ORTHO05D000001 1.3e-08 64.7 78 46.2
MD03G1170600 Malus domestica HOM05D003210 ORTHO05D000001 1.3e-08 64.7 69 42.0
Sed0026111 Sechium edule HOM05D003210 ORTHO05D000001 1.3e-08 64.7 78 41.0
Solyc10g081880.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 2.1e-08 63.9 191 44.0
TAR625G1193 Trochodendron aralioides HOM05D003210 ORTHO05D000001 2.1e-08 63.9 71 39.4
Lsat_1_v5_gn_7_6901 Lactuca sativa HOM05D003210 ORTHO05D000001 2.8e-08 63.5 144 56.9
Nitab4.5_0005257g0020 Nicotiana tabacum HOM05D003210 ORTHO05D000001 3.6e-08 63.2 184 44.6
CSS0000965 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 4.8e-08 62.8 207 44.4
vmacro18279 Vaccinium macrocarpon HOM05D003210 ORTHO05D008377 4.8e-08 62.8 105 34.3
BraA06t27482Z Brassica rapa HOM05D002986 ORTHO05D007611 8.1e-08 62.0 143 25.9
ECA236G0103 Erigeron canadensis HOM05D003210 ORTHO05D000001 1.1e-07 61.6 122 27.9
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 1.1e-07 61.6 138 27.5
Ah.09g237590 Amaranthus hybridus HOM05D002986 ORTHO05D007611 1.8e-07 60.8 139 25.9
A06p46180 Brassica napus HOM05D002986 ORTHO05D007611 1.8e-07 60.8 143 25.2
C07p29280 Brassica napus HOM05D002986 ORTHO05D007611 1.8e-07 60.8 143 25.9
BolC7t43470H Brassica oleracea HOM05D002986 ORTHO05D007611 1.8e-07 60.8 143 25.9
Prupe.4G052800 Prunus persica HOM05D002986 ORTHO05D007611 1.8e-07 60.8 146 25.3
CAN.G911.26 Capsicum annuum HOM05D006596 ORTHO05D008497 2.4e-07 60.5 135 26.7
Gohir.D05G161532 Gossypium hirsutum HOM05D002986 ORTHO05D007611 3.1e-07 60.1 140 27.9
Lj3C22T6 Lonicera japonica HOM05D003210 ORTHO05D000001 3.1e-07 60.1 70 37.1
TAR381G0732 Trochodendron aralioides HOM05D003210 ORTHO05D000001 3.1e-07 60.1 79 34.2
Dinv34734 Davidia involucrata HOM05D003210 ORTHO05D000001 4.0e-07 59.7 63 41.3
MD10G1288900 Malus domestica HOM05D002986 ORTHO05D007611 5.3e-07 59.3 146 24.0
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 5.3e-07 59.3 152 26.3
GSVIVG01038280001 Vitis vinifera HOM05D003210 ORTHO05D000001 5.3e-07 59.3 210 43.8
Solyc03g114920.1 Solanum lycopersicum HOM05D005362 ORTHO05D006895 9.0e-07 58.5 132 30.3
PGSC0003DMG400024629 Solanum tuberosum HOM05D005362 ORTHO05D006895 9.0e-07 58.5 132 30.3
Atru.chr10.1787 Acer truncatum HOM05D002986 ORTHO05D007611 1.2e-06 58.2 138 26.1
Dinv17357 Davidia involucrata HOM05D002986 ORTHO05D007611 1.2e-06 58.2 150 26.0
MD05G1166500 Malus domestica HOM05D007486 ORTHO05D003673 2.0e-06 57.4 141 28.4
Aqoxy1G00388 Aquilegia oxysepala HOM05D002986 ORTHO05D007611 2.6e-06 57.0 146 26.0
Hma1.2p1_0969F.1_g242592 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 2.6e-06 57.0 132 28.0
Hma1.2p1_0969F.1_g242594 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 2.6e-06 57.0 132 28.0
HPP92_001177 Vanilla planifolia HOM05D003210 ORTHO05D000001 2.6e-06 57.0 49 44.9
Glyma.13G235200 Glycine max HOM05D002986 ORTHO05D007611 3.4e-06 56.6 143 25.2
PSO541G2059 Papaver somniferum HOM05D003210 ORTHO05D000001 3.4e-06 56.6 82 31.7
Peaxi162Scf00201g00422 Petunia axillaris HOM05D005362 ORTHO05D006895 3.4e-06 56.6 132 28.8
Rhsim05G0168300 Rhododendron simsii HOM05D003210 ORTHO05D000001 3.4e-06 56.6 71 36.6
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 3.4e-06 56.6 77 33.8
Sp7g28540 Schrenkiella parvula HOM05D015591 ORTHO05D000001 4.5e-06 56.2 206 25.7
Sopen12g014610 Solanum pennellii HOM05D002453 ORTHO05D002107 4.5e-06 56.2 137 27.0
EL10Ac6g15188 Beta vulgaris HOM05D003210 ORTHO05D000001 5.8e-06 55.8 78 35.9
Thhalv10005373m.g Eutrema salsugineum HOM05D003210 ORTHO05D000001 5.8e-06 55.8 64 45.3
Solyc01g006850.1 Solanum lycopersicum HOM05D006596 ORTHO05D008497 5.8e-06 55.8 131 26.7
FAN07G2492 Fragaria x ananassa HOM05D002986 ORTHO05D007611 7.6e-06 55.5 145 22.8
MBI16_g31256_MAGBIO Magnolia biondii HOM05D003210 ORTHO05D000001 7.6e-06 55.5 79 32.9
Solyc02g077650.2 Solanum lycopersicum HOM05D002986 ORTHO05D007611 7.6e-06 55.5 145 24.8
ClCG03G008000 Citrullus lanatus HOM05D002986 ORTHO05D007611 9.9e-06 55.1 145 22.8
Nitab4.5_0002165g0010 Nicotiana tabacum HOM05D003210 ORTHO05D000001 9.9e-06 55.1 53 37.7
Psat5g177920 Pisum sativum HOM05D005674 ORTHO05D007015 9.9e-06 55.1 136 28.7


User provided reference genes

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