Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 0.0e+00 1083.2 545 100.0
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 0.0e+00 1083.2 545 100.0
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.3e-288 995.0 549 90.7
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.4e-287 990.7 549 90.3
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.6e-257 891.3 545 85.1
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 9.0e-240 833.6 558 75.1
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 1.1e-237 826.6 557 74.7
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 2.3e-235 818.9 572 71.9
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.1e-232 808.5 556 72.5
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.0e-231 805.8 558 73.5
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 1.9e-229 799.3 551 74.2
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 4.2e-229 798.1 552 73.0
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 4.6e-228 794.7 551 73.1
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 1.0e-227 793.5 551 73.1
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 5.1e-227 791.2 547 73.3
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 4.8e-225 784.6 547 72.8
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 2.4e-224 782.3 558 71.9
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 5.8e-223 777.7 552 72.5
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 4.2e-221 771.5 544 71.9
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 2.1e-220 769.2 557 70.4
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 1.3e-219 766.5 544 71.5
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 3.9e-219 765.0 549 72.7
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 6.7e-219 764.2 547 69.8
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.1e-218 763.5 556 72.1
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 3.3e-218 761.9 553 70.2
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 4.8e-217 758.1 556 68.7
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 8.2e-217 757.3 549 68.3
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 4.0e-216 755.0 546 70.5
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 5.3e-216 754.6 545 69.4
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 9.0e-216 753.8 547 68.6
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 2.6e-215 752.3 552 70.1
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 1.0e-214 750.4 549 67.8
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 1.6e-212 743.0 560 68.8
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 2.1e-212 742.7 560 67.7
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 2.7e-212 742.3 543 70.5
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 3.0e-211 738.8 552 68.7
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 3.9e-211 738.4 547 71.5
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 3.9e-211 738.4 559 68.9
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 5.1e-211 738.0 543 70.3
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 5.1e-211 738.0 548 69.5
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.1e-211 738.0 562 68.0
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 1.1e-210 736.9 564 66.8
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 1.5e-210 736.5 554 68.4
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 2.5e-210 735.7 572 67.0
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 1.3e-209 733.4 564 67.0
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 8.2e-209 730.7 552 68.7
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 8.2e-209 730.7 543 68.9
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 3.1e-208 728.8 549 66.8
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 6.9e-208 727.6 551 69.0
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 1.5e-207 726.5 552 69.2
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 1.5e-207 726.5 551 67.7
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 1.1e-205 720.3 546 68.7
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 1.4e-205 719.9 542 67.9
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 3.2e-205 718.8 551 67.5
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 5.5e-205 718.0 544 67.8
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 5.5e-205 718.0 543 68.1
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 2.1e-204 716.1 541 67.7
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 3.9e-203 711.8 551 65.0
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.5e-202 709.9 485 73.2
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 1.9e-202 709.5 543 66.9
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 7.4e-202 707.6 567 65.3
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 9.7e-202 707.2 561 65.2
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 4.8e-201 704.9 560 65.4
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 8.2e-201 704.1 547 67.3
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.8e-200 703.0 556 65.1
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 9.1e-200 700.7 544 66.9
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 1.2e-199 700.3 546 64.8
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 4.5e-199 698.4 540 66.3
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 4.5e-199 698.4 586 61.9
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 5.9e-199 698.0 536 67.2
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.0e-198 697.2 558 67.9
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 5.5e-197 691.4 565 65.5
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 9.4e-197 690.6 445 77.8
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 9.4e-197 690.6 563 63.9
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 7.9e-196 687.6 566 64.8
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 7.9e-196 687.6 566 64.8
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 1.0e-195 687.2 566 64.8
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 2.3e-195 686.0 566 63.4
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 8.8e-195 684.1 563 63.8
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 1.5e-194 683.3 566 64.7
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 2.0e-194 682.9 566 63.4
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 2.6e-194 682.6 561 64.0
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.3e-194 682.2 462 73.8
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 3.3e-194 682.2 565 65.1
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 3.3e-194 682.2 566 64.1
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 4.4e-194 681.8 400 82.0
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 1.7e-193 679.9 562 64.6
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 1.7e-190 669.8 565 62.7
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 1.1e-189 667.2 555 62.3
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 1.9e-189 666.4 561 63.5
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.2e-188 663.7 549 62.3
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 1.6e-188 663.3 555 63.4
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 2.1e-188 662.9 555 62.9
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 1.8e-187 659.8 561 62.2
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 3.9e-187 658.7 552 63.6
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 5.7e-186 654.8 552 63.6
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 4.8e-185 651.7 570 61.8
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 6.3e-185 651.4 555 61.8
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 1.1e-184 650.6 572 59.4
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 3.1e-184 649.0 552 62.9
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 4.1e-184 648.7 563 62.3
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 9.1e-184 647.5 545 62.0
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 2.9e-182 642.5 541 62.7
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 9.4e-181 637.5 562 59.8
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 4.0e-179 632.1 559 61.2
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 6.7e-179 631.3 559 61.0
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 1.5e-178 630.2 551 63.5
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 1.3e-177 627.1 435 72.6
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 1.4e-176 623.6 561 60.4
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 4.5e-175 618.6 442 68.1
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 3.8e-174 615.5 546 58.4
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 5.0e-174 615.1 579 55.8
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.9e-173 613.2 561 60.8
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 9.4e-173 610.9 568 58.5
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 3.4e-170 602.4 527 62.0
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 1.3e-161 573.9 550 56.2
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 1.0e-158 564.3 402 69.7
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 1.6e-156 557.0 384 71.9
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 6.1e-156 555.1 538 56.5
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 1.8e-155 553.5 512 57.2
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 2.2e-153 546.6 555 56.8
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 7.0e-152 541.6 337 76.6
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 2.0e-146 523.5 561 54.0
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.2e-138 497.7 301 80.1
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 3.0e-134 483.0 389 64.8
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 2.5e-125 453.4 469 55.4
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 6.9e-123 445.3 454 46.5
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.5e-109 400.2 284 70.4
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 1.6e-108 397.5 498 49.2
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 4.3e-101 372.9 326 64.4
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 2.4e-99 367.1 389 44.7
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 4.1e-91 339.7 197 80.2
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.6e-87 327.8 369 49.1
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.0e-86 325.1 357 50.4
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.8e-86 324.3 210 72.4
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.4e-75 288.1 155 89.0
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 2.1e-55 221.1 226 58.4
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 3.6e-55 220.3 199 58.3
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 1.1e-51 208.8 279 48.0
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 5.2e-46 189.9 173 59.5
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.2e-45 188.7 285 44.9
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 1.9e-35 154.8 91 80.2
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.6e-34 151.8 91 79.1
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 3.4e-29 134.0 470 25.3
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 3.3e-24 117.5 79 70.9
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 2.8e-23 114.4 76 73.7
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 2.8e-23 114.4 69 78.3
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 4.7e-23 113.6 115 48.7
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.1e-22 112.5 69 76.8
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 4.6e-18 97.1 180 30.6
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.0e-17 95.9 151 41.7
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.2e-15 89.0 132 43.9
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 2.1e-15 88.2 51 82.4
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 4.7e-15 87.0 73 56.2
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.9e-12 77.8 75 56.0
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 3.3e-08 64.3 53 60.4


User provided reference genes

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