Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR677G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.1e-123 447.2 338 100.0
TAR100G0004 Trochodendron aralioides HOM05D004676 ORTHO05D005661 2.8e-114 416.0 346 94.8
TAR383G0008 Trochodendron aralioides HOM05D004676 ORTHO05D005661 4.7e-98 362.1 346 88.2
TAR455G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.8e-97 360.1 346 87.9
TAR633G1457 Trochodendron aralioides HOM05D004676 ORTHO05D005661 3.9e-84 315.8 346 81.5
TAR625G0807 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.6e-69 267.3 302 84.1
TAR588G0001 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.3e-66 257.7 213 70.9
Actinidia23939 Actinidia chinensis HOM05D004676 ORTHO05D005661 9.7e-59 231.5 214 65.4
Prupe.6G077300 Prunus persica HOM05D004676 ORTHO05D005661 2.1e-58 230.3 219 64.4
QL09p008735 Quercus lobata HOM05D004676 ORTHO05D005661 1.1e-57 228.0 224 63.8
Nn1g00565 Nelumbo nucifera HOM05D004676 ORTHO05D005661 4.5e-56 222.6 188 71.3
HanXRQChr01g0009481 Helianthus annuus HOM05D004676 ORTHO05D005661 2.2e-55 220.3 179 70.4
Manes.02G133000 Manihot esculenta HOM05D004676 ORTHO05D005661 3.8e-55 219.5 195 61.0
Atru.chr3.3906 Acer truncatum HOM05D004676 ORTHO05D005661 8.5e-55 218.4 194 63.9
MBI14_g16284_MAGBIO Magnolia biondii HOM05D004676 ORTHO05D005661 2.5e-54 216.9 201 67.7
RcHm_v2.0_Chr5g0064541 Rosa chinensis HOM05D004676 ORTHO05D005661 4.2e-54 216.1 207 63.3
CsaV3_6G016860 Cucumis sativus L. HOM05D004676 ORTHO05D005661 5.5e-54 215.7 200 65.0
Cpa.g.sc81.149 Carica papaya HOM05D004676 ORTHO05D005661 9.3e-54 214.9 196 65.8
Haze_24097 Corylus avellana HOM05D004676 ORTHO05D005661 9.3e-54 214.9 195 65.1
Sabra01G0116300 Salix brachista HOM05D004676 ORTHO05D005661 9.3e-54 214.9 215 59.5
Hma1.2p1_0418F.1_g149200 Hydrangea macrophylla HOM05D004676 ORTHO05D005661 2.7e-53 213.4 204 65.2
Sabra01G0117800 Salix brachista HOM05D004676 ORTHO05D005661 3.6e-53 213.0 215 59.1
Haze_12047 Corylus avellana HOM05D004676 ORTHO05D005661 6.1e-53 212.2 200 64.5
CiPaw.13G094200 Carya illinoinensis HOM05D004676 ORTHO05D005661 1.3e-52 211.1 188 65.4
Ciclev10028807m.g Citrus clementina HOM05D004676 ORTHO05D005661 2.3e-52 210.3 213 61.0
Dinv12426 Davidia involucrata HOM05D004676 ORTHO05D005661 3.9e-52 209.5 183 67.2
Glyma.10G284600 Glycine max HOM05D004676 ORTHO05D005661 5.1e-52 209.1 221 61.1
MELO3C025917.2 Cucumis melo HOM05D004676 ORTHO05D005661 1.1e-51 208.0 168 69.6
Gohir.A07G098600 Gossypium hirsutum HOM05D004676 ORTHO05D005661 1.9e-51 207.2 181 65.7
Thecc.09G321800 Theobroma cacao HOM05D004676 ORTHO05D005661 5.7e-51 205.7 212 60.8
Cfa011505 Carpinus fangiana HOM05D004676 ORTHO05D005661 7.4e-51 205.3 198 63.1
Gorai.001G110800 Gossypium raimondii HOM05D004676 ORTHO05D005661 7.4e-51 205.3 177 66.1
Rhsim01G0227600 Rhododendron simsii HOM05D004676 ORTHO05D005661 9.7e-51 204.9 218 61.5
Glyma.20G104700 Glycine max HOM05D004676 ORTHO05D005661 1.3e-50 204.5 218 60.6
Lj1P153T22 Lonicera japonica HOM05D004676 ORTHO05D005661 1.3e-50 204.5 174 67.2
Gohir.D07G102900 Gossypium hirsutum HOM05D004676 ORTHO05D005661 2.2e-50 203.8 205 62.0
Lsat_1_v5_gn_5_170600 Lactuca sativa HOM05D004676 ORTHO05D005661 2.2e-50 203.8 122 81.1
Thecc.09G321600 Theobroma cacao HOM05D004676 ORTHO05D005661 3.7e-50 203.0 203 61.1
vmacro05212 Vaccinium macrocarpon HOM05D004676 ORTHO05D005661 1.1e-49 201.4 122 83.6
Cpa.g.sc161.42 Carica papaya HOM05D004676 ORTHO05D005661 1.4e-49 201.1 211 61.1
Sc21g0005490 Simmondsia chinensis HOM05D004676 ORTHO05D005661 1.4e-49 201.1 182 65.9
Manes.01G173800 Manihot esculenta HOM05D004676 ORTHO05D005661 2.4e-49 200.3 343 63.6
unitig_747.g22032 Utricularia gibba HOM05D004676 ORTHO05D005661 2.4e-49 200.3 211 58.8
FAN25G1996 Fragaria x ananassa HOM05D004676 ORTHO05D005661 3.1e-49 199.9 349 59.6
Duzib168G2248 Durio zibethinus HOM05D004676 ORTHO05D005661 4.1e-49 199.5 172 65.7
FAN21G2159 Fragaria x ananassa HOM05D004676 ORTHO05D005661 4.1e-49 199.5 351 55.3
SHI01165 Sapria himalayana HOM05D004676 ORTHO05D005661 5.3e-49 199.1 186 59.1
CiPaw.14G068300 Carya illinoinensis HOM05D004676 ORTHO05D005661 1.2e-48 198.0 187 64.7
ClCG02G020150 Citrullus lanatus HOM05D004676 ORTHO05D005661 1.2e-48 198.0 206 60.7
Potri.001G148000 Populus trichocarpa HOM05D004676 ORTHO05D005661 1.2e-48 198.0 171 66.1
TWI79G0464 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 1.2e-48 198.0 345 55.7
THA.LOC104826325 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 2.6e-48 196.8 187 64.2
MD03G1093300 Malus domestica HOM05D004676 ORTHO05D005661 4.5e-48 196.1 179 63.7
Oeu019194.1 Olea europaea HOM05D004676 ORTHO05D005661 1.0e-47 194.9 184 64.1
Actinidia34405 Actinidia chinensis HOM05D004676 ORTHO05D005661 1.3e-47 194.5 180 63.9
SGA_v2.0_scaffold154G37155 Striga asiatica HOM05D004676 ORTHO05D005661 2.2e-47 193.7 187 62.0
FAN11G0391 Fragaria x ananassa HOM05D004676 ORTHO05D005661 3.8e-47 193.0 346 59.5
unitig_0.g1557 Utricularia gibba HOM05D004676 ORTHO05D005661 3.8e-47 193.0 208 57.7
MD11G1108100 Malus domestica HOM05D004676 ORTHO05D005661 5.0e-47 192.6 175 61.1
Hund18907 Selenicereus undatus HOM05D004676 ORTHO05D005661 5.0e-47 192.6 194 62.4
Eucgr.E01882 Eucalyptus grandis HOM05D004676 ORTHO05D005661 6.5e-47 192.2 119 78.2
THA.LOC104800662 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 1.9e-46 190.7 177 63.8
PGR119G2251 Punica granatum HOM05D004676 ORTHO05D005661 2.5e-46 190.3 186 61.8
AT2G28910 Arabidopsis thaliana HOM05D004676 ORTHO05D005661 3.2e-46 189.9 181 63.5
ECA248G3797 Erigeron canadensis HOM05D004676 ORTHO05D005661 3.2e-46 189.9 211 55.0
Carub.0004s0990 Capsella rubella HOM05D004676 ORTHO05D005661 4.2e-46 189.5 170 64.7
Ah.04g160390 Amaranthus hybridus HOM05D004676 ORTHO05D005661 7.2e-46 188.7 177 65.0
Phvul.007G016200 Phaseolus vulgaris HOM05D004676 ORTHO05D005661 1.2e-45 188.0 184 62.0
CDE07G0255 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 1.6e-45 187.6 203 59.6
Nitab4.5_0001424g0070 Nicotiana tabacum HOM05D004676 ORTHO05D005661 1.6e-45 187.6 183 63.4
Aa31LG5G7310 Aethionema arabicum HOM05D004676 ORTHO05D005661 2.1e-45 187.2 176 62.5
AUR62000799 Chenopodium quinoa HOM05D004676 ORTHO05D005661 2.1e-45 187.2 176 65.9
Ca_11220_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 2.7e-45 186.8 187 61.0
Nitab4.5_0005880g0060 Nicotiana tabacum HOM05D004676 ORTHO05D005661 2.7e-45 186.8 183 63.4
AL4G23440 Arabidopsis lyrata HOM05D004676 ORTHO05D005661 4.6e-45 186.0 172 63.4
AUR62005169 Chenopodium quinoa HOM05D004676 ORTHO05D005661 4.6e-45 186.0 176 65.3
Eucgr.E01963 Eucalyptus grandis HOM05D004676 ORTHO05D005661 1.0e-44 184.9 181 61.3
FvH4_3g36111 Fragaria vesca HOM05D004676 ORTHO05D005661 1.0e-44 184.9 349 58.2
Sp4g11720 Schrenkiella parvula HOM05D004676 ORTHO05D005661 1.4e-44 184.5 173 63.6
Nitab4.5_0003154g0010 Nicotiana tabacum HOM05D004676 ORTHO05D005661 2.3e-44 183.7 181 61.3
Psat0s2898g0040 Pisum sativum HOM05D004676 ORTHO05D005661 3.0e-44 183.3 183 62.3
FAN16G2805 Fragaria x ananassa HOM05D004676 ORTHO05D005661 3.9e-44 183.0 346 56.6
PSO151G0082 Papaver somniferum HOM05D004676 ORTHO05D005661 3.9e-44 183.0 178 61.2
PSO339G5531 Papaver somniferum HOM05D004676 ORTHO05D005661 3.9e-44 183.0 178 61.2
DCAR_025381 Daucus carota HOM05D004676 ORTHO05D005661 5.1e-44 182.6 205 58.5
CANSAT21G2535 Cannabis sativa HOM05D004676 ORTHO05D005661 1.5e-43 181.0 193 57.5
Oeu051436.2 Olea europaea HOM05D004676 ORTHO05D005661 1.5e-43 181.0 262 50.8
CARHR122080 Cardamine hirsuta HOM05D004676 ORTHO05D005661 2.0e-43 180.6 171 63.7
Ca_09918_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 2.0e-43 180.6 223 57.8
Lalb_Chr02g0143571 Lupinus albus HOM05D004676 ORTHO05D005661 2.0e-43 180.6 218 55.0
VMungo0720G1898 Vigna mungo HOM05D004676 ORTHO05D005661 2.0e-43 180.6 183 60.7
EL10Ac4g09397 Beta vulgaris HOM05D004676 ORTHO05D005661 2.6e-43 180.3 187 62.6
BcaC02g11024 Brassica carinata HOM05D004676 ORTHO05D005661 2.6e-43 180.3 173 63.0
C04p22070 Brassica napus HOM05D004676 ORTHO05D005661 2.6e-43 180.3 173 63.0
BolC4t23730H Brassica oleracea HOM05D004676 ORTHO05D005661 2.6e-43 180.3 173 63.0
Sopen08g001490 Solanum pennellii HOM05D004676 ORTHO05D005661 3.3e-43 179.9 183 61.7
TPR.G18864 Trifolium pratense HOM05D004676 ORTHO05D005661 3.3e-43 179.9 187 60.4
Migut.D02100 Erythranthe guttata HOM05D004676 ORTHO05D005661 4.4e-43 179.5 205 55.1
Peaxi162Scf00045g00052 Petunia axillaris HOM05D004676 ORTHO05D005661 4.4e-43 179.5 183 59.6
CDE04G1893 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 7.4e-43 178.7 172 61.0
RcHm_v2.0_Chr5g0064551 Rosa chinensis HOM05D004676 ORTHO05D005661 7.4e-43 178.7 174 59.8
Lalb_Chr06g0163861 Lupinus albus HOM05D004676 ORTHO05D005661 9.7e-43 178.3 209 55.5
Sed0011846 Sechium edule HOM05D004676 ORTHO05D005661 9.7e-43 178.3 213 57.3
Solyc08g005450.3 Solanum lycopersicum HOM05D004676 ORTHO05D005661 9.7e-43 178.3 183 61.2
PGSC0003DMG400018489 Solanum tuberosum HOM05D004676 ORTHO05D005661 9.7e-43 178.3 182 62.1
ATR0733G034 Amborella trichopoda HOM05D004676 ORTHO05D005661 2.2e-42 177.2 201 55.7
BolC4t27336H Brassica oleracea HOM05D004676 ORTHO05D005661 2.2e-42 177.2 166 62.0
Cc01_g12890 Coffea canephora HOM05D004676 ORTHO05D005661 2.2e-42 177.2 198 57.6
ECA233G5350 Erigeron canadensis HOM05D004676 ORTHO05D005661 2.2e-42 177.2 181 58.0
Eucgr.J02052 Eucalyptus grandis HOM05D004676 ORTHO05D005661 2.2e-42 177.2 219 53.4
SGA_v2.0_scaffold47G17549 Striga asiatica HOM05D004676 ORTHO05D005661 2.2e-42 177.2 207 57.0
Lj5g0019317 Lotus japonicus HOM05D004676 ORTHO05D005661 2.8e-42 176.8 188 56.9
arahy.Tifrunner.gnm1.ann1.ID2MIU Arachis hypogaea HOM05D004676 ORTHO05D005661 3.7e-42 176.4 188 59.0
SEGI_40255 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 3.7e-42 176.4 222 54.1
Aqoxy7G03598 Aquilegia oxysepala HOM05D004676 ORTHO05D005661 6.3e-42 175.6 349 57.9
CAN.G137.34 Capsicum annuum HOM05D004676 ORTHO05D005661 6.3e-42 175.6 181 60.8
Migut.L00698 Erythranthe guttata HOM05D004676 ORTHO05D005661 1.1e-41 174.9 185 62.7
A07p19390 Brassica napus HOM05D004676 ORTHO05D005661 3.1e-41 173.3 171 61.4
DCAR_024536 Daucus carota HOM05D004676 ORTHO05D005661 3.1e-41 173.3 115 74.8
HPP92_003389 Vanilla planifolia HOM05D004676 ORTHO05D005661 3.1e-41 173.3 172 59.9
Migut.L00671 Erythranthe guttata HOM05D004676 ORTHO05D005661 3.4e-40 169.9 217 55.3
COL.COLO4_18509 Corchorus olitorius HOM05D004676 ORTHO05D005661 1.3e-39 167.9 138 65.2
TWI75G1679 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 1.7e-39 167.5 349 51.0
BcaB02g10212 Brassica carinata HOM05D004676 ORTHO05D005661 3.8e-39 166.4 174 61.5
RcHm_v2.0_Chr5g0064841 Rosa chinensis HOM05D004676 ORTHO05D005661 4.2e-38 162.9 170 53.5
BraA07t29644Z Brassica rapa HOM05D004676 ORTHO05D005661 5.5e-38 162.5 161 59.6
A04p05090 Brassica napus HOM05D004676 ORTHO05D005661 1.2e-37 161.4 167 61.7
A04p21940 Brassica napus HOM05D004676 ORTHO05D005661 1.2e-37 161.4 167 61.7
BraA04t17761Z Brassica rapa HOM05D004676 ORTHO05D005661 1.2e-37 161.4 167 61.7
Pp3c8_12040 Physcomitrium patens HOM05D004676 ORTHO05D005661 1.2e-37 161.4 228 48.7
BcaC02g08125 Brassica carinata HOM05D004676 ORTHO05D005661 2.1e-37 160.6 166 59.0
Os09g0103700 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 4.7e-37 159.5 212 47.2
AagrBONN_evm.TU.Sc2ySwM_228.4612 Anthoceros agrestis HOM05D004676 ORTHO05D005661 1.5e-35 154.5 215 48.4
FvH4_3g36120 Fragaria vesca HOM05D002246 ORTHO05D002308 3.3e-35 153.3 182 53.8
Os05g0297400 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 4.4e-35 152.9 190 51.1
Mapoly0006s0051 Marchantia polymorpha HOM05D004676 ORTHO05D005661 1.3e-34 151.4 222 49.1
FAN11G1736 Fragaria x ananassa HOM05D002246 ORTHO05D002308 4.8e-34 149.4 182 53.3
Zm00001eb307410 Zea mays HOM05D004676 ORTHO05D005661 1.4e-33 147.9 131 61.8
Zm00001eb095710 Zea mays HOM05D004676 ORTHO05D005661 4.1e-33 146.4 145 59.3
SMO117G0168 Selaginella moellendorffii HOM05D004676 ORTHO05D005661 8.5e-31 138.7 166 54.2
ECA233G0785 Erigeron canadensis HOM05D004676 ORTHO05D005661 3.2e-30 136.7 177 50.3
ECA233G0017 Erigeron canadensis HOM05D004676 ORTHO05D005661 6.7e-28 129.0 178 49.4
C04p58100 Brassica napus HOM05D004676 ORTHO05D005661 4.4e-27 126.3 97 69.1
ATR0693G379 Amborella trichopoda HOM05D004676 ORTHO05D005661 7.5e-27 125.6 209 48.3
BraA07t30700Z Brassica rapa HOM05D004676 ORTHO05D005661 4.1e-25 119.8 91 67.0
MD11G1107700 Malus domestica HOM05D004676 ORTHO05D005661 4.2e-22 109.8 72 70.8
HPP92_003385 Vanilla planifolia HOM05D004676 ORTHO05D005661 2.1e-21 107.5 110 60.0
CBR_g53496 Chara braunii HOM05D004676 ORTHO05D137281 2.7e-21 107.1 206 42.2
RcHm_v2.0_Chr5g0064811 Rosa chinensis HOM05D004676 ORTHO05D005661 2.7e-21 107.1 237 38.8
Eucgr.E01961 Eucalyptus grandis HOM05D004676 ORTHO05D005661 8.8e-20 102.1 68 72.1
ECA233G4946 Erigeron canadensis HOM05D004676 ORTHO05D005661 7.5e-19 99.0 181 42.5
Dinv42954 Davidia involucrata HOM05D004736 ORTHO05D006424 9.1e-17 92.0 51 86.3
Dinv43146 Davidia involucrata HOM05D004736 ORTHO05D006424 9.1e-17 92.0 51 86.3
ECA247G4102 Erigeron canadensis HOM05D004676 ORTHO05D005661 2.1e-13 80.9 101 48.5
ECA233G2734 Erigeron canadensis HOM05D004676 ORTHO05D005661 2.0e-11 74.3 43 83.7
TAR636G3695 Trochodendron aralioides HOM05D004676 ORTHO05D415520 3.7e-10 70.1 60 70.0
SEGI_06382 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 6.6e-07 59.3 39 71.8


User provided reference genes

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