Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR667G0003 Trochodendron aralioides HOM05D000001 ORTHO05D004044 2.3e-279 964.9 490 100.0
TAR624G0865 Trochodendron aralioides HOM05D000001 ORTHO05D004044 1.0e-186 657.1 437 77.3
TAR626G1342 Trochodendron aralioides HOM05D000001 ORTHO05D004044 7.7e-182 641.0 445 76.2
Dinv40932 Davidia involucrata HOM05D000001 ORTHO05D004044 7.0e-167 591.3 439 71.3
Atru.chr7.1828 Acer truncatum HOM05D000001 ORTHO05D004044 3.6e-163 578.9 449 67.7
Manes.16G087000 Manihot esculenta HOM05D000001 ORTHO05D004044 6.1e-163 578.2 455 67.9
Ciclev10007851m.g Citrus clementina HOM05D000001 ORTHO05D004044 1.5e-161 573.5 450 66.7
COL.COLO4_21160 Corchorus olitorius HOM05D000001 ORTHO05D004044 1.7e-160 570.1 452 66.8
QL02p017294 Quercus lobata HOM05D000001 ORTHO05D004044 1.2e-158 563.9 437 68.0
Potri.018G047700 Populus trichocarpa HOM05D000001 ORTHO05D004044 2.6e-158 562.8 453 66.2
Aqoxy7G04098 Aquilegia oxysepala HOM05D000001 ORTHO05D004044 7.7e-158 561.2 448 65.6
Haze_18323 Corylus avellana HOM05D000001 ORTHO05D004044 8.5e-157 557.8 473 62.8
CSS0022708 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 3.6e-155 552.4 451 66.3
FvH4_2g30791 Fragaria vesca HOM05D000001 ORTHO05D004044 2.0e-153 546.6 440 65.2
Sabra06G0168800 Salix brachista HOM05D000001 ORTHO05D004044 3.4e-153 545.8 502 60.4
PSO724G0994 Papaver somniferum HOM05D000001 ORTHO05D004044 1.3e-152 543.9 451 64.3
Gorai.009G039900 Gossypium raimondii HOM05D000001 ORTHO05D004044 3.7e-152 542.3 451 64.3
Gohir.A05G037900 Gossypium hirsutum HOM05D000001 ORTHO05D004044 4.8e-152 542.0 451 64.3
Prupe.1G402100 Prunus persica HOM05D000001 ORTHO05D004044 6.3e-152 541.6 449 63.3
FAN24G2651 Fragaria x ananassa HOM05D000001 ORTHO05D004044 4.1e-151 538.9 454 63.2
Gohir.D05G039400 Gossypium hirsutum HOM05D000001 ORTHO05D004044 4.1e-151 538.9 451 64.1
FAN20G1082 Fragaria x ananassa HOM05D000001 ORTHO05D004044 5.4e-151 538.5 460 62.4
Hma1.2p1_0664F.1_g198920 Hydrangea macrophylla HOM05D000001 ORTHO05D004044 7.0e-151 538.1 438 65.1
FAN27G1566 Fragaria x ananassa HOM05D000001 ORTHO05D004044 9.1e-151 537.7 451 63.2
PSO135G0765 Papaver somniferum HOM05D000001 ORTHO05D004044 9.1e-151 537.7 451 64.1
MD15G1047700 Malus domestica HOM05D000001 ORTHO05D004044 1.2e-150 537.3 439 64.5
Thecc.09G065500 Theobroma cacao HOM05D000001 ORTHO05D004044 4.5e-150 535.4 452 64.4
CSS0007474 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 1.0e-149 534.3 439 65.1
MBI19_g47982_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D004044 2.2e-149 533.1 501 59.5
MD08G1046100 Malus domestica HOM05D000001 ORTHO05D004044 7.2e-148 528.1 439 63.8
GSVIVG01035490001 Vitis vinifera HOM05D000001 ORTHO05D004044 1.0e-146 524.2 448 62.7
CiPaw.16G067100 Carya illinoinensis HOM05D000001 ORTHO05D004044 5.2e-146 521.9 453 62.0
Duzib187G1939 Durio zibethinus HOM05D000001 ORTHO05D004044 5.2e-146 521.9 452 63.7
RcHm_v2.0_Chr6g0312051 Rosa chinensis HOM05D000001 ORTHO05D004044 5.2e-146 521.9 440 64.1
Glyma.14G106500 Glycine max HOM05D000001 ORTHO05D004044 6.8e-146 521.5 438 64.4
Eucgr.C00743 Eucalyptus grandis HOM05D000001 ORTHO05D004044 1.5e-145 520.4 449 59.9
Potri.006G218900 Populus trichocarpa HOM05D000001 ORTHO05D004044 4.4e-145 518.8 419 65.9
FAN15G1549 Fragaria x ananassa HOM05D000001 ORTHO05D004044 5.7e-145 518.5 461 61.0
TWI32G1352 Tripterygium wilfordii HOM05D000001 ORTHO05D004044 5.7e-145 518.5 451 62.1
TPR.G38869 Trifolium pratense HOM05D000001 ORTHO05D004044 7.5e-145 518.1 449 61.0
arahy.Tifrunner.gnm1.ann1.EC7DMA Arachis hypogaea HOM05D000001 ORTHO05D004044 1.3e-144 517.3 470 59.6
Actinidia29292 Actinidia chinensis HOM05D000001 ORTHO05D004044 3.7e-144 515.8 443 63.2
Solyc08g061320.3 Solanum lycopersicum HOM05D000001 ORTHO05D004044 4.9e-144 515.4 448 62.7
PGSC0003DMG400012991 Solanum tuberosum HOM05D000001 ORTHO05D004044 1.8e-143 513.5 448 62.5
Cc08_g00980 Coffea canephora HOM05D000001 ORTHO05D004044 2.4e-143 513.1 439 62.0
arahy.Tifrunner.gnm1.ann1.1E00SW Arachis hypogaea HOM05D000001 ORTHO05D004044 3.1e-143 512.7 449 61.0
Glyma.17G219600 Glycine max HOM05D000001 ORTHO05D004044 5.4e-143 511.9 449 62.6
Duzib168G1373 Durio zibethinus HOM05D000001 ORTHO05D004044 9.1e-143 511.1 452 62.6
VMungo1309G1461 Vigna mungo HOM05D000001 ORTHO05D004044 2.0e-142 510.0 451 61.4
Sopen08g016700 Solanum pennellii HOM05D000001 ORTHO05D004044 4.5e-142 508.8 448 62.5
TAR636G0641 Trochodendron aralioides HOM05D000001 ORTHO05D004044 7.7e-142 508.1 337 78.0
ClCG05G015870 Citrullus lanatus HOM05D000001 ORTHO05D004044 1.3e-141 507.3 451 62.1
CiPaw.15G090000 Carya illinoinensis HOM05D000001 ORTHO05D004044 5.0e-141 505.4 480 59.4
Phvul.001G044600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 8.6e-141 504.6 440 63.2
Medtr1g014880 Medicago truncatula HOM05D000001 ORTHO05D004044 1.1e-140 504.2 474 58.2
Nn8g38610 Nelumbo nucifera HOM05D000001 ORTHO05D004044 2.5e-140 503.1 478 59.4
Nitab4.5_0004440g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004044 2.5e-140 503.1 448 61.4
CANSAT25G0247 Cannabis sativa HOM05D000001 ORTHO05D004044 3.3e-140 502.7 440 61.8
CAN.G117.2 Capsicum annuum HOM05D000001 ORTHO05D004044 3.3e-140 502.7 448 61.8
TWI34G0443 Tripterygium wilfordii HOM05D000001 ORTHO05D004044 4.2e-140 502.3 455 60.7
Nitab4.5_0009247g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004044 5.5e-140 501.9 452 61.5
Glyma.06G057700 Glycine max HOM05D000001 ORTHO05D004044 7.2e-140 501.5 452 60.4
Glyma.04G057200 Glycine max HOM05D000001 ORTHO05D004044 2.1e-139 500.0 441 61.7
MELO3C016924.2 Cucumis melo HOM05D000001 ORTHO05D004044 6.1e-139 498.4 451 61.0
Sabra18G0045700 Salix brachista HOM05D000001 ORTHO05D004044 1.0e-138 497.7 479 58.0
CsaV3_4G036160 Cucumis sativus L. HOM05D000001 ORTHO05D004044 1.4e-138 497.3 451 60.5
Gorai.013G221300 Gossypium raimondii HOM05D000001 ORTHO05D004044 3.0e-138 496.1 441 61.5
Peaxi162Scf00327g00026 Petunia axillaris HOM05D000001 ORTHO05D004044 4.0e-138 495.7 448 61.2
Rhsim11G0001100 Rhododendron simsii HOM05D000001 ORTHO05D004044 4.0e-138 495.7 450 60.2
Lj5g0004443 Lotus japonicus HOM05D000001 ORTHO05D004044 8.9e-138 494.6 451 60.8
arahy.Tifrunner.gnm1.ann1.WRM076 Arachis hypogaea HOM05D000001 ORTHO05D004044 1.2e-137 494.2 450 59.6
Gohir.A13G188300 Gossypium hirsutum HOM05D000001 ORTHO05D004044 1.2e-137 494.2 441 61.0
Gohir.D13G195200 Gossypium hirsutum HOM05D000001 ORTHO05D004044 2.6e-137 493.0 441 61.2
PGR142G0487 Punica granatum HOM05D000001 ORTHO05D004044 3.4e-137 492.7 442 59.7
Phvul.009G083600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 5.7e-137 491.9 451 59.9
THA.LOC104819898 Tarenaya hassleriana HOM05D000001 ORTHO05D004044 9.8e-137 491.1 453 59.2
Lj7C209T10 Lonicera japonica HOM05D000001 ORTHO05D004044 1.7e-136 490.3 443 63.7
Manes.03G056801 Manihot esculenta HOM05D000001 ORTHO05D004044 6.4e-136 488.4 457 60.0
arahy.Tifrunner.gnm1.ann1.8BKD36 Arachis hypogaea HOM05D000001 ORTHO05D004044 1.1e-135 487.6 450 58.9
VMungo0647G0604 Vigna mungo HOM05D000001 ORTHO05D004044 1.1e-135 487.6 440 61.8
TWI63G1385 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 1.8e-135 486.9 452 59.1
MBI19_g09929_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D004044 7.8e-134 481.5 479 56.4
Oeu003966.1 Olea europaea HOM05D000001 ORTHO05D004044 7.8e-134 481.5 450 60.0
Lalb_Chr22g0349641 Lupinus albus HOM05D000001 ORTHO05D004044 1.1e-132 477.6 449 59.9
EL10Ac2g02405 Beta vulgaris HOM05D000001 ORTHO05D004044 1.5e-132 477.2 436 56.2
Dinv41848 Davidia involucrata HOM05D000001 ORTHO05D004044 1.5e-132 477.2 450 60.4
Lj1g0000975 Lotus japonicus HOM05D000001 ORTHO05D004044 2.5e-132 476.5 449 58.6
Sed0025024 Sechium edule HOM05D000001 ORTHO05D004044 5.6e-132 475.3 462 58.0
Lalb_Chr11g0063391 Lupinus albus HOM05D000001 ORTHO05D004044 9.5e-132 474.6 449 57.9
AUR62037726 Chenopodium quinoa HOM05D000001 ORTHO05D004044 1.6e-131 473.8 441 55.3
Actinidia16899 Actinidia chinensis HOM05D000001 ORTHO05D004044 3.6e-131 472.6 442 59.3
DCAR_004372 Daucus carota HOM05D000001 ORTHO05D004044 6.8e-130 468.4 440 59.3
SalBow1G0904 Salvia bowleyana HOM05D000001 ORTHO05D004044 1.5e-129 467.2 439 56.7
MSTRG.25995 Avicennia marina HOM05D000001 ORTHO05D004044 1.9e-127 460.3 452 58.0
Psat6g024040 Pisum sativum HOM05D000001 ORTHO05D004044 9.2e-127 458.0 414 61.4
Aa31LG5G9520 Aethionema arabicum HOM05D000001 ORTHO05D004044 1.2e-126 457.6 441 56.0
Sc06g0000110 Simmondsia chinensis HOM05D000001 ORTHO05D004044 1.2e-126 457.6 415 58.8
Ca_13092_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004044 1.3e-125 454.1 414 60.1
AUR62020279 Chenopodium quinoa HOM05D000001 ORTHO05D004044 2.3e-125 453.4 428 54.7
ECA236G1474 Erigeron canadensis HOM05D000001 ORTHO05D004044 9.5e-124 448.0 444 56.5
Migut.E01787 Erythranthe guttata HOM05D000001 ORTHO05D004044 1.6e-123 447.2 449 55.9
ECA240G1094 Erigeron canadensis HOM05D000001 ORTHO05D004044 1.1e-122 444.5 439 56.7
Sp4g06560 Schrenkiella parvula HOM05D000001 ORTHO05D004044 2.3e-122 443.4 444 54.7
Carub.0004s0615 Capsella rubella HOM05D000001 ORTHO05D004044 5.2e-122 442.2 443 55.5
Actinidia29353 Actinidia chinensis HOM05D000001 ORTHO05D004044 1.5e-121 440.7 471 55.4
Actinidia39673 Actinidia chinensis HOM05D000001 ORTHO05D004044 4.4e-121 439.1 440 57.5
Duzib150G1238 Durio zibethinus HOM05D000001 ORTHO05D004044 4.4e-121 439.1 483 53.0
Lalb_Chr24g0393701 Lupinus albus HOM05D000001 ORTHO05D004044 2.2e-120 436.8 440 57.7
DCAR_003727 Daucus carota HOM05D000001 ORTHO05D004044 3.5e-118 429.5 440 53.6
AT2G26280 Arabidopsis thaliana HOM05D000001 ORTHO05D004044 1.3e-117 427.6 441 55.1
Hund25544 Selenicereus undatus HOM05D000001 ORTHO05D004044 8.6e-117 424.9 503 48.9
AL4G18860 Arabidopsis lyrata HOM05D000001 ORTHO05D004044 5.6e-116 422.2 444 54.5
HanXRQChr05g0136451 Helianthus annuus HOM05D000001 ORTHO05D004044 1.2e-115 421.0 441 55.6
Lalb_Chr14g0375461 Lupinus albus HOM05D000001 ORTHO05D004044 1.8e-114 417.2 454 54.6
Thhalv10001942m.g Eutrema salsugineum HOM05D000001 ORTHO05D004044 5.2e-114 415.6 450 52.0
Actinidia01324 Actinidia chinensis HOM05D000001 ORTHO05D004044 2.2e-112 410.2 334 65.0
Sed0004805 Sechium edule HOM05D000001 ORTHO05D004044 4.1e-111 406.0 422 56.2
Lsat_1_v5_gn_8_70460 Lactuca sativa HOM05D000001 ORTHO05D004044 7.1e-111 405.2 444 56.1
SGA_v2.0_scaffold163G37994 Striga asiatica HOM05D000001 ORTHO05D004044 7.8e-110 401.7 440 54.3
HanXRQChr03g0067161 Helianthus annuus HOM05D000001 ORTHO05D004044 1.3e-109 401.0 446 54.3
SGA_v2.0_scaffold169G38720 Striga asiatica HOM05D000001 ORTHO05D004044 6.6e-109 398.7 439 53.8
vmacro00208 Vaccinium macrocarpon HOM05D000001 ORTHO05D004044 6.6e-109 398.7 679 40.1
unitig_32.g10913 Utricularia gibba HOM05D000001 ORTHO05D004044 1.5e-108 397.5 439 52.8
THA.LOC104804451 Tarenaya hassleriana HOM05D000001 ORTHO05D004044 3.3e-108 396.4 453 53.9
BcaB08g35273 Brassica carinata HOM05D000001 ORTHO05D004044 6.2e-99 365.5 447 49.4
HPP92_016599 Vanilla planifolia HOM05D000001 ORTHO05D004044 3.1e-98 363.2 448 50.2
unitig_4.g30334 Utricularia gibba HOM05D000001 ORTHO05D004044 4.0e-98 362.8 416 50.2
CDE05G2793 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 4.4e-97 359.4 440 48.9
ATR0598G100 Amborella trichopoda HOM05D000001 ORTHO05D004044 6.4e-96 355.5 454 48.7
Oeu060162.1 Olea europaea HOM05D000001 ORTHO05D004044 2.7e-94 350.1 344 57.3
Lsat_1_v5_gn_8_149721 Lactuca sativa HOM05D000001 ORTHO05D004044 4.6e-94 349.4 447 50.6
Nn6g35692 Nelumbo nucifera HOM05D000001 ORTHO05D004044 1.8e-90 337.4 280 63.6
BraA09t40935Z Brassica rapa HOM05D000001 ORTHO05D004044 1.3e-88 331.3 455 49.0
HanXRQChr09g0248701 Helianthus annuus HOM05D000001 ORTHO05D004044 2.9e-88 330.1 446 48.9
BolC8t51400H Brassica oleracea HOM05D000001 ORTHO05D004044 6.4e-88 328.9 450 48.9
A09p55320 Brassica napus HOM05D000001 ORTHO05D004044 2.4e-87 327.0 454 47.4
C08p38250 Brassica napus HOM05D000001 ORTHO05D004044 2.7e-86 323.6 451 48.6
CARHR115120 Cardamine hirsuta HOM05D000001 ORTHO05D004044 7.9e-86 322.0 341 51.9
unitig_748.g8235 Utricularia gibba HOM05D000001 ORTHO05D004044 3.9e-85 319.7 394 48.0
BcaC07g40830 Brassica carinata HOM05D000001 ORTHO05D004044 5.6e-84 315.8 453 47.5
SalBow4G2835 Salvia bowleyana HOM05D000001 ORTHO05D004044 3.7e-83 313.2 411 47.0
CSS0015944 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 4.0e-82 309.7 264 62.1
HPP92_011061 Vanilla planifolia HOM05D000001 ORTHO05D004044 2.9e-80 303.5 437 44.2
Migut.A00058 Erythranthe guttata HOM05D000001 ORTHO05D004044 9.3e-79 298.5 416 45.7
Os06g0199200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 1.3e-77 294.7 457 44.6
Gohir.A08G247200 Gossypium hirsutum HOM05D000001 ORTHO05D004044 1.1e-76 291.6 480 40.8
Gorai.004G286100 Gossypium raimondii HOM05D000001 ORTHO05D004044 8.2e-75 285.4 443 41.3
Psat0s3154g0080 Pisum sativum HOM05D000001 ORTHO05D004044 1.8e-74 284.3 277 54.2
SEGI_25644 Sequoiadendron giganteum HOM05D000001 ORTHO05D004044 6.9e-74 282.3 438 42.7
Gohir.D08G268400 Gossypium hirsutum HOM05D000001 ORTHO05D004044 4.5e-73 279.6 443 41.1
Zm00001eb278590 Zea mays HOM05D000001 ORTHO05D004044 3.8e-72 276.6 437 43.5
Cpa.g.sc82.5 Carica papaya HOM05D000001 ORTHO05D004044 2.5e-63 247.3 185 69.2
BcaB06g28092 Brassica carinata HOM05D000001 ORTHO05D004044 1.0e-61 241.9 436 42.2
A04p20320 Brassica napus HOM05D000001 ORTHO05D004044 1.7e-59 234.6 425 40.9
BraA04t17611Z Brassica rapa HOM05D000001 ORTHO05D004044 4.1e-58 229.9 425 40.2
C04p56020 Brassica napus HOM05D000001 ORTHO05D004044 4.7e-54 216.5 425 39.5
BolC4t27135H Brassica oleracea HOM05D000001 ORTHO05D004044 4.7e-54 216.5 425 39.5
SGA_v2.0_scaffold20G09145 Striga asiatica HOM05D000001 ORTHO05D004044 2.3e-53 214.2 439 36.7
BcaC02g08289 Brassica carinata HOM05D000001 ORTHO05D004044 3.9e-53 213.4 425 39.3
Os02g0780550 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 7.4e-52 209.1 427 39.3
CDE05G0380 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 2.2e-51 207.6 248 48.8
Psat0s3154g0240 Pisum sativum HOM05D000001 ORTHO05D004044 2.2e-51 207.6 300 44.3
Psat0s3775g0160 Pisum sativum HOM05D000001 ORTHO05D004044 2.2e-51 207.6 300 44.3
SHI28008 Sapria himalayana HOM05D000001 ORTHO05D004044 1.6e-46 191.4 438 36.1
Pp3c26_4880 Physcomitrium patens HOM05D000001 ORTHO05D004044 3.3e-44 183.7 503 33.6
Zm00001eb005950 Zea mays HOM05D000001 ORTHO05D004044 5.7e-44 183.0 434 34.8
Pp3c4_25250 Physcomitrium patens HOM05D000001 ORTHO05D004044 6.3e-43 179.5 507 33.5
Os03g0180300 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 1.8e-42 177.9 433 32.6
Zm00001eb373910 Zea mays HOM05D000001 ORTHO05D004044 4.2e-39 166.8 276 39.5
SMO356G0739 Selaginella moellendorffii HOM05D000001 ORTHO05D004044 5.4e-34 149.8 463 32.0
CBR_g37677 Chara braunii HOM05D000001 ORTHO05D004044 4.7e-30 136.7 248 37.9
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 3.0e-29 134.0 128 57.8
CDE05G1886 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 9.8e-28 129.0 128 61.7
AagrBONN_evm.TU.Sc2ySwM_117.1386 Anthoceros agrestis HOM05D000001 ORTHO05D004044 1.9e-23 114.8 505 29.5
Peaxi162Scf00365g00014 Petunia axillaris HOM05D000001 ORTHO05D004044 8.0e-22 109.4 105 56.2
Zm00001eb411920 Zea mays HOM05D000001 ORTHO05D004044 2.7e-17 94.4 185 40.5
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 7.8e-17 92.8 136 42.6
Oeu024206.1 Olea europaea HOM05D000001 ORTHO05D004044 2.4e-10 71.2 144 36.1
Oeu024205.1 Olea europaea HOM05D007843 ORTHO05D003639 1.2e-09 68.9 84 48.8
Zm00001eb401800 Zea mays HOM05D000001 ORTHO05D004044 2.7e-09 67.8 265 27.2
Zm00001eb217260 Zea mays HOM05D000001 ORTHO05D004044 3.5e-09 67.4 183 32.8
Solyc08g061455.1 Solanum lycopersicum HOM05D000001 ORTHO05D004044 6.0e-09 66.6 78 52.6
DCAR_001243 Daucus carota HOM05D000399 ORTHO05D000304 2.3e-08 64.7 118 38.1
Zm00001eb255250 Zea mays HOM05D004347 ORTHO05D005270 5.0e-08 63.5 48 64.6
SHI17133 Sapria himalayana HOM05D000001 ORTHO05D004044 1.5e-07 62.0 68 47.1
MCO09G693 Micromonas commoda HOM05D000001 ORTHO05D004044 6.2e-06 56.6 216 27.3


User provided reference genes

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