Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR665G0001 Trochodendron aralioides HOM05D001182 ORTHO05D008051 2.2e-49 198.7 106 100.0
TAR628G0505 Trochodendron aralioides HOM05D001182 ORTHO05D008051 5.8e-26 120.9 74 89.2
Atru.chr6.839_Atru.chr6.840 Acer truncatum HOM05D001182 ORTHO05D008051 6.6e-22 107.5 72 79.2
Ciclev10000484m.g Citrus clementina HOM05D001182 ORTHO05D008051 1.9e-21 105.9 72 79.2
Prupe.1G566800 Prunus persica HOM05D001182 ORTHO05D008051 7.3e-21 104.0 93 67.7
Thecc.02G039700 Theobroma cacao HOM05D001182 ORTHO05D008051 7.3e-21 104.0 72 77.8
CiPaw.06G148200 Carya illinoinensis HOM05D001182 ORTHO05D008051 1.2e-20 103.2 94 63.8
Manes.07G014700 Manihot esculenta HOM05D001182 ORTHO05D008051 1.2e-20 103.2 89 64.0
QL11p000326 Quercus lobata HOM05D001182 ORTHO05D008051 1.6e-20 102.8 98 62.2
RcHm_v2.0_Chr7g0222711 Rosa chinensis HOM05D001182 ORTHO05D008051 2.1e-20 102.4 93 66.7
Cpa.g.sc113.70 Carica papaya HOM05D001182 ORTHO05D008051 2.8e-20 102.1 72 75.0
COL.COLO4_17879 Corchorus olitorius HOM05D001182 ORTHO05D008051 2.8e-20 102.1 92 64.1
MD15G1421600 Malus domestica HOM05D001182 ORTHO05D008051 2.8e-20 102.1 93 64.5
Haze_01651 Corylus avellana HOM05D001182 ORTHO05D008051 3.6e-20 101.7 72 76.4
Oeu008885.2 Olea europaea HOM05D001182 ORTHO05D008051 3.6e-20 101.7 96 61.5
Nn1g08676 Nelumbo nucifera HOM05D001182 ORTHO05D008051 4.7e-20 101.3 70 77.1
FAN08G2833 Fragaria x ananassa HOM05D001182 ORTHO05D008051 6.2e-20 100.9 72 77.8
Sc21g0000760 Simmondsia chinensis HOM05D001182 ORTHO05D008051 6.2e-20 100.9 89 62.9
Gohir.A03G211100 Gossypium hirsutum HOM05D001182 ORTHO05D008051 8.1e-20 100.5 72 76.4
GSVIVG01022994001 Vitis vinifera HOM05D001182 ORTHO05D008051 8.1e-20 100.5 93 54.8
Actinidia00212 Actinidia chinensis HOM05D001182 ORTHO05D008051 1.4e-19 99.8 72 73.6
Dinv24265 Davidia involucrata HOM05D001182 ORTHO05D008051 1.4e-19 99.8 90 61.1
MD08G1227800 Malus domestica HOM05D001182 ORTHO05D008051 1.4e-19 99.8 93 63.4
PGR042G0576 Punica granatum HOM05D001182 ORTHO05D008051 1.8e-19 99.4 72 76.4
AUR62015048 Chenopodium quinoa HOM05D001182 ORTHO05D008051 2.3e-19 99.0 72 72.2
AUR62017507 Chenopodium quinoa HOM05D001182 ORTHO05D008051 2.3e-19 99.0 72 72.2
FvH4_5g29650 Fragaria vesca HOM05D001182 ORTHO05D008051 2.3e-19 99.0 93 66.7
EL10Ac9g22713 Beta vulgaris HOM05D001182 ORTHO05D008051 3.1e-19 98.6 72 70.8
Glyma.15G047100 Glycine max HOM05D001182 ORTHO05D008051 3.1e-19 98.6 96 57.3
Ah.01g002710 Amaranthus hybridus HOM05D001182 ORTHO05D008051 4.0e-19 98.2 92 58.7
Gohir.D02G232700 Gossypium hirsutum HOM05D001182 ORTHO05D008051 4.0e-19 98.2 72 75.0
Gorai.002G209500 Gossypium raimondii HOM05D001182 ORTHO05D008051 4.0e-19 98.2 93 59.1
Gorai.005G260500 Gossypium raimondii HOM05D001182 ORTHO05D008051 4.0e-19 98.2 72 75.0
Hma1.2p1_0557F.1_g178390 Hydrangea macrophylla HOM05D001182 ORTHO05D008051 4.0e-19 98.2 72 73.6
arahy.Tifrunner.gnm1.ann1.SMR6SK Arachis hypogaea HOM05D001182 ORTHO05D008051 5.2e-19 97.8 98 59.2
arahy.Tifrunner.gnm1.ann1.UK23IF Arachis hypogaea HOM05D001182 ORTHO05D008051 5.2e-19 97.8 98 59.2
FAN04G2731 Fragaria x ananassa HOM05D001182 ORTHO05D008051 5.2e-19 97.8 95 65.3
Glyma.08G185700 Glycine max HOM05D001182 ORTHO05D008051 6.8e-19 97.4 98 56.1
Gohir.D01G168700 Gossypium hirsutum HOM05D001182 ORTHO05D008051 6.8e-19 97.4 93 59.1
Duzib132G0224 Durio zibethinus HOM05D001182 ORTHO05D008051 1.2e-18 96.7 92 58.7
CSS0008710 Camellia sinensis var. sinensis HOM05D001182 ORTHO05D008051 2.6e-18 95.5 74 67.6
MBI09_g06383_MAGBIO Magnolia biondii HOM05D001182 ORTHO05D008051 2.6e-18 95.5 70 74.3
Nitab4.5_0002245g0160 Nicotiana tabacum HOM05D001182 ORTHO05D008051 2.6e-18 95.5 72 72.2
Sed0008850 Sechium edule HOM05D001182 ORTHO05D008051 2.6e-18 95.5 89 58.4
vmacro01766 Vaccinium macrocarpon HOM05D001182 ORTHO05D008051 3.4e-18 95.1 86 61.6
Rhsim11G0130000 Rhododendron simsii HOM05D001182 ORTHO05D008051 4.4e-18 94.7 72 68.1
SGA_v2.0_scaffold145G36071 Striga asiatica HOM05D001182 ORTHO05D008051 4.4e-18 94.7 78 64.1
CAN.G1577.8 Capsicum annuum HOM05D001182 ORTHO05D008051 5.8e-18 94.4 72 70.8
Eucgr.G00608 Eucalyptus grandis HOM05D001182 ORTHO05D008051 5.8e-18 94.4 72 70.8
Gohir.A01G177900 Gossypium hirsutum HOM05D001182 ORTHO05D008051 5.8e-18 94.4 93 59.1
Potri.001G210200 Populus trichocarpa HOM05D001182 ORTHO05D008051 7.5e-18 94.0 90 61.1
Solyc01g104300.3 Solanum lycopersicum HOM05D001182 ORTHO05D008051 7.5e-18 94.0 86 64.0
Sopen01g046740 Solanum pennellii HOM05D001182 ORTHO05D008051 7.5e-18 94.0 86 64.0
Lj9A307T42 Lonicera japonica HOM05D001182 ORTHO05D008051 9.8e-18 93.6 97 56.7
Nn5g28124 Nelumbo nucifera HOM05D001182 ORTHO05D008051 9.8e-18 93.6 78 64.1
ClCG09G013930 Citrullus lanatus HOM05D001182 ORTHO05D008051 1.3e-17 93.2 72 66.7
AL2G30850 Arabidopsis lyrata HOM05D001182 ORTHO05D008051 1.7e-17 92.8 89 58.4
Dinv19358 Davidia involucrata HOM05D001182 ORTHO05D008051 1.7e-17 92.8 72 70.8
Cc02_g22390 Coffea canephora HOM05D001182 ORTHO05D008051 2.9e-17 92.0 71 70.4
DCAR_013991 Daucus carota HOM05D001182 ORTHO05D008051 2.9e-17 92.0 93 53.8
CsaV3_1G044980 Cucumis sativus L. HOM05D001182 ORTHO05D008051 3.7e-17 91.7 92 55.4
PSO170G3364 Papaver somniferum HOM05D001182 ORTHO05D008051 3.7e-17 91.7 89 60.7
PSO017G4704 Papaver somniferum HOM05D001182 ORTHO05D008051 4.9e-17 91.3 89 60.7
MELO3C010089.2 Cucumis melo HOM05D001182 ORTHO05D008051 6.4e-17 90.9 92 54.3
Os01g0869000 Oryza sativa ssp. japonica HOM05D001182 ORTHO05D008051 6.4e-17 90.9 69 69.6
Carub.0002s1812 Capsella rubella HOM05D001182 ORTHO05D008051 1.1e-16 90.1 89 57.3
Ca_00081_v3 Cicer arietinum L. HOM05D001182 ORTHO05D008051 1.4e-16 89.7 96 54.2
MSTRG.5232 Avicennia marina HOM05D001182 ORTHO05D008051 1.9e-16 89.4 90 58.9
THA.LOC104800080 Tarenaya hassleriana HOM05D001182 ORTHO05D008051 1.9e-16 89.4 69 65.2
TWI14G1019 Tripterygium wilfordii HOM05D001182 ORTHO05D008051 1.9e-16 89.4 70 67.1
VMungo0540G0659 Vigna mungo HOM05D001182 ORTHO05D008051 1.9e-16 89.4 98 50.0
Aqoxy5G02433 Aquilegia oxysepala HOM05D001182 ORTHO05D008051 3.2e-16 88.6 72 65.3
Medtr2g007330 Medicago truncatula HOM05D001182 ORTHO05D008051 3.2e-16 88.6 99 53.5
SalBow6G4578 Salvia bowleyana HOM05D001182 ORTHO05D008051 4.1e-16 88.2 69 71.0
SalBow6G5030 Salvia bowleyana HOM05D001182 ORTHO05D008051 4.1e-16 88.2 69 71.0
Migut.N01040 Erythranthe guttata HOM05D001182 ORTHO05D008051 7.1e-16 87.4 72 66.7
Phvul.006G214050 Phaseolus vulgaris HOM05D001182 ORTHO05D008051 7.1e-16 87.4 98 50.0
BcaB03g14882 Brassica carinata HOM05D001182 ORTHO05D008051 9.2e-16 87.0 72 62.5
CSS0017219 Camellia sinensis var. sinensis HOM05D001182 ORTHO05D008051 9.2e-16 87.0 76 63.2
Lj6g0002068 Lotus japonicus HOM05D001182 ORTHO05D008051 9.2e-16 87.0 97 53.6
AT1G71240 Arabidopsis thaliana HOM05D001182 ORTHO05D008051 1.2e-15 86.7 89 55.1
ATR0584G139 Amborella trichopoda HOM05D001182 ORTHO05D008051 1.6e-15 86.3 70 62.9
C06p45360 Brassica napus HOM05D001182 ORTHO05D008051 1.6e-15 86.3 91 53.8
BolC6t39592H Brassica oleracea HOM05D001182 ORTHO05D008051 1.6e-15 86.3 72 62.5
BcaC08g46560 Brassica carinata HOM05D001182 ORTHO05D008051 2.1e-15 85.9 91 53.8
BraA07t31321Z Brassica rapa HOM05D001182 ORTHO05D008051 2.1e-15 85.9 91 53.8
Psat1g224520 Pisum sativum HOM05D001182 ORTHO05D008051 2.1e-15 85.9 95 52.6
TPR.G2100 Trifolium pratense HOM05D001182 ORTHO05D008051 2.1e-15 85.9 96 52.1
A07p37600 Brassica napus HOM05D001182 ORTHO05D008051 2.7e-15 85.5 72 62.5
Aa31LG4G9270 Aethionema arabicum HOM05D001182 ORTHO05D008051 3.5e-15 85.1 72 65.3
CANSAT54G1880 Cannabis sativa HOM05D001182 ORTHO05D008051 3.5e-15 85.1 94 55.3
Thhalv10018126m.g Eutrema salsugineum HOM05D001182 ORTHO05D008051 3.5e-15 85.1 72 61.1
ECA240G2723 Erigeron canadensis HOM05D001182 ORTHO05D008051 4.6e-15 84.7 71 63.4
ECA234G2900 Erigeron canadensis HOM05D001182 ORTHO05D008051 1.0e-14 83.6 72 59.7
Lalb_Chr15g0090641 Lupinus albus HOM05D001182 ORTHO05D008051 1.3e-14 83.2 88 53.4
Sp5g26440 Schrenkiella parvula HOM05D001182 ORTHO05D008051 1.7e-14 82.8 67 64.2
HanXRQChr16g0513941 Helianthus annuus HOM05D001182 ORTHO05D008051 3.0e-14 82.0 71 60.6
Lsat_1_v5_gn_9_118280 Lactuca sativa HOM05D001182 ORTHO05D008051 6.6e-14 80.9 72 59.7
Lsat_1_v5_gn_5_109401 Lactuca sativa HOM05D001182 ORTHO05D008051 8.6e-14 80.5 97 53.6
unitig_52.g17435 Utricularia gibba HOM05D001182 ORTHO05D008051 1.1e-13 80.1 72 59.7
HanXRQChr03g0066821 Helianthus annuus HOM05D001182 ORTHO05D008051 1.9e-13 79.3 70 60.0
HPP92_001083 Vanilla planifolia HOM05D001182 ORTHO05D008051 7.3e-13 77.4 66 60.6
Actinidia39048 Actinidia chinensis HOM05D001182 ORTHO05D008051 1.6e-12 76.3 76 59.2
Nitab4.5_0011195g0030 Nicotiana tabacum HOM05D001182 ORTHO05D008051 4.0e-11 71.6 88 50.0
Peaxi162Scf00011g00358 Petunia axillaris HOM05D001182 ORTHO05D008051 5.2e-11 71.2 64 62.5
Mapoly0004s0069 Marchantia polymorpha HOM05D001182 ORTHO05D008051 3.0e-06 55.5 72 41.7


User provided reference genes

Program Settings