Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 5.1e-243 844.3 544 100.0
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 7.4e-210 734.2 545 91.7
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 7.7e-167 591.3 545 75.6
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.8e-161 572.8 547 75.0
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 3.7e-161 572.4 547 75.0
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 4.1e-152 542.3 545 71.2
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 1.6e-148 530.4 547 70.4
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 4.7e-148 528.9 547 67.3
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 7.8e-143 511.5 545 70.5
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 1.6e-140 503.8 548 69.2
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 2.8e-140 503.1 546 66.8
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 1.4e-139 500.7 544 71.1
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 2.3e-139 500.0 546 66.8
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 5.2e-139 498.8 553 68.4
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 6.4e-137 491.9 546 64.7
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 1.6e-135 487.3 550 66.5
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 2.1e-135 486.9 546 66.3
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 3.5e-135 486.1 552 65.2
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 6.0e-135 485.3 545 64.8
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 2.3e-134 483.4 552 69.2
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 5.1e-134 482.3 545 62.2
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 5.1e-134 482.3 549 64.5
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 5.1e-134 482.3 540 66.9
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 8.6e-134 481.5 560 64.3
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 8.6e-134 481.5 546 65.2
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 1.5e-133 480.7 549 66.5
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 4.3e-133 479.2 553 69.8
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 9.5e-133 478.0 546 65.6
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 2.8e-132 476.5 545 64.2
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 4.7e-132 475.7 588 63.4
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 1.4e-131 474.2 546 68.3
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 1.8e-131 473.8 546 62.5
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 3.4e-130 469.5 535 64.5
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 5.8e-130 468.8 569 61.9
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 2.9e-129 466.5 547 64.5
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 3.7e-129 466.1 548 63.3
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 1.4e-128 464.2 547 66.4
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 3.2e-128 463.0 549 62.1
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.2e-127 461.1 552 63.0
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.2e-127 461.1 545 63.1
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 3.5e-127 459.5 573 63.5
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 8.6e-126 454.9 544 65.4
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 1.9e-125 453.8 550 64.7
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 2.5e-125 453.4 544 63.6
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 7.3e-125 451.8 551 60.8
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.1e-124 450.3 549 63.4
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.4e-123 447.6 545 65.5
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 1.8e-123 447.2 550 63.8
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 8.9e-123 444.9 548 61.3
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 8.9e-123 444.9 547 63.4
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 4.4e-122 442.6 552 63.0
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 5.8e-122 442.2 557 63.0
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 9.9e-122 441.4 552 66.5
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 7.1e-120 435.3 545 61.8
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.2e-119 434.5 545 61.7
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 1.6e-119 434.1 548 64.1
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 2.7e-119 433.3 549 63.4
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 3.5e-119 433.0 549 61.7
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 3.9e-118 429.5 560 59.5
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 1.5e-117 427.6 545 60.6
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 1.9e-117 427.2 547 63.6
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 1.9e-117 427.2 545 60.0
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 3.3e-117 426.4 546 63.7
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 7.3e-117 425.2 522 62.8
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 1.3e-116 424.5 562 60.9
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 6.2e-116 422.2 545 62.6
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.5e-114 417.5 550 57.8
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 3.4e-114 416.4 550 64.4
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 5.8e-114 415.6 549 61.4
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 7.6e-114 415.2 550 64.7
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.8e-113 412.9 550 60.7
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 2.7e-111 406.8 545 62.9
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 7.8e-111 405.2 551 59.5
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 6.6e-110 402.1 547 60.9
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.5e-109 401.0 584 54.6
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 5.6e-109 399.1 547 62.0
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 7.3e-109 398.7 551 60.3
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 7.3e-109 398.7 547 61.4
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.1e-108 397.1 546 61.0
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 1.2e-106 391.3 546 58.6
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 3.4e-106 389.8 563 59.7
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 3.8e-105 386.3 558 55.6
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 5.4e-104 382.5 563 58.1
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 1.6e-103 380.9 559 60.1
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.3e-102 377.1 546 59.9
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 2.5e-101 373.6 549 62.1
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 9.6e-101 371.7 550 58.5
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 2.1e-100 370.5 544 57.7
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.3e-97 361.3 561 57.0
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 1.6e-95 354.4 549 59.0
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.8e-94 350.9 557 58.0
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 2.0e-90 337.4 489 59.1
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 5.0e-89 332.8 466 58.2
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 8.4e-89 332.0 596 50.0
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 9.3e-88 328.6 562 53.7
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 7.9e-87 325.5 553 56.2
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 1.0e-86 325.1 563 52.8
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 6.7e-86 322.4 558 49.6
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 8.7e-86 322.0 552 54.2
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 4.3e-85 319.7 297 75.8
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 5.7e-85 319.3 566 52.5
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 3.7e-84 316.6 565 51.2
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 8.2e-84 315.5 459 59.3
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.4e-83 314.7 556 50.0
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 1.4e-83 314.7 551 54.1
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 1.0e-81 308.5 548 52.9
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 6.5e-81 305.8 563 51.9
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 3.2e-80 303.5 594 48.1
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 5.5e-80 302.8 562 52.3
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 6.1e-79 299.3 383 65.3
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 7.9e-79 298.9 553 52.4
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 7.9e-79 298.9 576 50.7
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.1e-77 295.0 233 74.2
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 1.0e-73 282.0 198 78.3
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 3.8e-73 280.0 584 47.8
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 7.2e-72 275.8 492 56.1
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 1.6e-71 274.6 218 71.1
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 1.5e-69 268.1 591 47.5
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 8.2e-68 262.3 493 50.9
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 7.0e-67 259.2 154 86.4
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 8.2e-60 235.7 176 73.3
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.6e-58 231.5 319 56.1
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 3.0e-54 217.2 165 73.9
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 1.4e-51 208.4 440 50.9
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 5.0e-49 199.9 544 37.9
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 1.2e-39 168.7 276 50.7
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 2.2e-36 157.9 399 44.6
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 3.5e-34 150.6 268 49.6
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.9e-32 144.8 122 69.7
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 3.1e-30 137.5 523 42.4
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 2.2e-28 131.3 109 69.7
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.9e-28 131.0 175 54.9
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 4.9e-28 130.2 74 85.1
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 4.6e-26 123.6 81 71.6
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 3.9e-25 120.6 130 59.2
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.8e-23 114.4 115 63.5
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 6.2e-23 113.2 106 64.2
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.9e-19 101.7 64 82.8
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 2.4e-19 101.3 111 59.5
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 5.4e-19 100.1 168 41.1
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 1.5e-16 92.0 103 56.3
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 3.3e-16 90.9 104 56.7
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 2.6e-13 81.3 58 79.3
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 1.3e-12 79.0 86 55.8
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.7e-12 78.6 46 87.0
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 8.4e-12 76.3 115 56.5
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 5.4e-11 73.6 71 60.6
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 5.4e-11 73.6 71 60.6
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 4.7e-07 60.5 156 30.8
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 4.7e-07 60.5 74 54.1


User provided reference genes

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