Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3686 Trochodendron aralioides HOM05D007785 ORTHO05D008997 2.8e-39 164.9 85 100.0
Nn1g00585 Nelumbo nucifera HOM05D007785 ORTHO05D008997 1.6e-26 122.5 85 72.9
TAR375G1071 Trochodendron aralioides HOM05D007785 ORTHO05D008997 1.0e-25 119.8 74 82.4
TAR374G0344 Trochodendron aralioides HOM05D007785 ORTHO05D008997 2.3e-25 118.6 85 75.3
Nn6g33639 Nelumbo nucifera HOM05D007785 ORTHO05D008997 6.9e-22 107.1 74 74.3
CSS0006779 Camellia sinensis var. sinensis HOM05D007785 ORTHO05D008997 1.9e-19 99.0 78 64.1
Atru.chr5.15 Acer truncatum HOM05D007785 ORTHO05D008997 2.3e-17 92.0 85 58.8
Actinidia05806 Actinidia chinensis HOM05D007785 ORTHO05D008997 3.0e-17 91.7 78 61.5
Aqoxy3G02467 Aquilegia oxysepala HOM05D007785 ORTHO05D008997 3.0e-17 91.7 81 58.0
Dinv28928 Davidia involucrata HOM05D007785 ORTHO05D008997 1.9e-16 89.0 84 59.5
Potri.001G145066 Populus trichocarpa HOM05D007785 ORTHO05D008997 5.7e-16 87.4 85 55.3
CiPaw.13G020000 Carya illinoinensis HOM05D007785 ORTHO05D008997 2.8e-15 85.1 85 55.3
QL04p025073 Quercus lobata HOM05D007785 ORTHO05D008997 2.8e-15 85.1 79 57.0
Dinv43998 Davidia involucrata HOM05D007785 ORTHO05D008997 6.3e-15 84.0 68 66.2
Hma1.2p1_0021F.1_g014470 Hydrangea macrophylla HOM05D007785 ORTHO05D008997 1.4e-14 82.8 78 55.1
Peaxi162Scf01144g00004 Petunia axillaris HOM05D007785 ORTHO05D008997 1.4e-14 82.8 84 50.0
Cc02_g26020 Coffea canephora HOM05D007785 ORTHO05D008997 4.1e-14 81.3 77 57.1
MD07G1083000 Malus domestica HOM05D007785 ORTHO05D008997 1.2e-13 79.7 85 51.8
Hma1.2p1_0601F.1_g187290 Hydrangea macrophylla HOM05D007785 ORTHO05D008997 2.6e-13 78.6 77 59.7
Peaxi162Scf00901g00032 Petunia axillaris HOM05D007785 ORTHO05D008997 4.5e-13 77.8 78 51.3
Haze_02930 Corylus avellana HOM05D007785 ORTHO05D008997 7.7e-13 77.0 82 52.4
Sabra01G0113200 Salix brachista HOM05D007785 ORTHO05D008997 7.7e-13 77.0 80 50.0
Lalb_Chr05g0214041 Lupinus albus HOM05D007785 ORTHO05D008997 1.0e-12 76.6 73 54.8
Nitab4.5_0001476g0130 Nicotiana tabacum HOM05D007785 ORTHO05D008997 2.9e-12 75.1 85 48.2
MD02G1229100 Malus domestica HOM05D007785 ORTHO05D008997 3.8e-12 74.7 85 48.2
Thecc.03G232200 Theobroma cacao HOM05D012518 ORTHO05D008997 3.8e-12 74.7 77 54.5
COL.COLO4_17092 Corchorus olitorius HOM05D012518 ORTHO05D008997 8.5e-12 73.6 85 49.4
Lalb_Chr09g0329531 Lupinus albus HOM05D007785 ORTHO05D008997 2.5e-11 72.0 73 52.1
Gohir.A13G011800 Gossypium hirsutum HOM05D007785 ORTHO05D008997 3.2e-11 71.6 81 51.9
Gohir.D13G012700 Gossypium hirsutum HOM05D007785 ORTHO05D008997 3.2e-11 71.6 81 51.9
CSS0013282 Camellia sinensis var. sinensis HOM05D007785 ORTHO05D008997 7.2e-11 70.5 78 52.6
Potri.003G089100 Populus trichocarpa HOM05D007785 ORTHO05D008997 7.2e-11 70.5 77 50.6
Oeu021958.1 Olea europaea HOM05D007785 ORTHO05D008997 9.4e-11 70.1 77 50.6
Gohir.D08G179100 Gossypium hirsutum HOM05D012518 ORTHO05D008997 1.6e-10 69.3 74 51.4
Gorai.013G013800 Gossypium raimondii HOM05D007785 ORTHO05D008997 1.6e-10 69.3 81 50.6
Nitab4.5_0003887g0040 Nicotiana tabacum HOM05D007785 ORTHO05D008997 1.6e-10 69.3 69 52.2
Sed0022240 Sechium edule HOM05D007785 ORTHO05D008997 2.7e-10 68.6 86 45.3
Manes.15G169900 Manihot esculenta HOM05D007785 ORTHO05D008997 3.6e-10 68.2 77 49.4
MSTRG.17094 Avicennia marina HOM05D007785 ORTHO05D008997 6.1e-10 67.4 77 45.5
RcHm_v2.0_Chr1g0341401 Rosa chinensis HOM05D007785 ORTHO05D008997 6.1e-10 67.4 78 46.2
Gohir.A08G158700 Gossypium hirsutum HOM05D012518 ORTHO05D008997 1.0e-09 66.6 74 51.4
SalBow4G1855 Salvia bowleyana HOM05D007785 ORTHO05D008997 1.0e-09 66.6 79 48.1
Ca_22059_v3 Cicer arietinum L. HOM05D007785 ORTHO05D008997 1.4e-09 66.2 80 48.8
FvH4_7g07910 Fragaria vesca HOM05D007785 ORTHO05D008997 1.4e-09 66.2 85 43.5
FAN03G1138 Fragaria x ananassa HOM05D007785 ORTHO05D008997 1.4e-09 66.2 85 43.5
FAN06G1471 Fragaria x ananassa HOM05D007785 ORTHO05D008997 1.4e-09 66.2 85 43.5
FAN10G3075 Fragaria x ananassa HOM05D007785 ORTHO05D008997 1.4e-09 66.2 85 43.5
Gorai.004G187600 Gossypium raimondii HOM05D012518 ORTHO05D008997 1.4e-09 66.2 74 50.0
Phvul.002G005800 Phaseolus vulgaris HOM05D007785 ORTHO05D008997 1.8e-09 65.9 73 47.9
Rhsim01G0145700 Rhododendron simsii HOM05D007785 ORTHO05D008997 1.8e-09 65.9 73 53.4
Ciclev10033202m.g Citrus clementina HOM05D007785 ORTHO05D008997 2.3e-09 65.5 86 48.8
CSS0022493 Camellia sinensis var. sinensis HOM05D007785 ORTHO05D008997 3.0e-09 65.1 71 52.1
Cc08_g02350 Coffea canephora HOM05D007785 ORTHO05D008997 3.0e-09 65.1 72 52.8
Migut.B01462 Erythranthe guttata HOM05D007785 ORTHO05D008997 3.0e-09 65.1 77 49.4
Nitab4.5_0006705g0010 Nicotiana tabacum HOM05D007785 ORTHO05D008997 5.1e-09 64.3 73 47.9
Solyc01g080890.2 Solanum lycopersicum HOM05D007785 ORTHO05D008997 5.1e-09 64.3 80 43.8
Glyma.01G199900 Glycine max HOM05D007785 ORTHO05D008997 6.7e-09 63.9 73 47.9
FAN01G0084 Fragaria x ananassa HOM05D007785 ORTHO05D008997 8.8e-09 63.5 85 42.4
Medtr4g098710 Medicago truncatula HOM05D007785 ORTHO05D008997 8.8e-09 63.5 74 50.0
Glyma.05G113700 Glycine max HOM05D007785 ORTHO05D008997 1.5e-08 62.8 73 52.1
Lj4g0027032 Lotus japonicus HOM05D007785 ORTHO05D008997 1.5e-08 62.8 82 46.3
Nitab4.5_0000166g0090 Nicotiana tabacum HOM05D007785 ORTHO05D008997 1.5e-08 62.8 73 47.9
Glyma.11G042100 Glycine max HOM05D007785 ORTHO05D008997 1.9e-08 62.4 73 46.6
Glyma.17G153500 Glycine max HOM05D007785 ORTHO05D008997 1.9e-08 62.4 73 50.7
Migut.N01702 Erythranthe guttata HOM05D007785 ORTHO05D008997 2.5e-08 62.0 77 46.8
Sopen01g032480 Solanum pennellii HOM05D007785 ORTHO05D008997 2.5e-08 62.0 80 42.5
Gohir.A03G002300 Gossypium hirsutum HOM05D012518 ORTHO05D008997 3.3e-08 61.6 79 45.6
ClCG05G002700 Citrullus lanatus HOM05D007785 ORTHO05D008997 4.3e-08 61.2 89 43.8
ECA234G3743 Erigeron canadensis HOM05D007785 ORTHO05D008997 4.3e-08 61.2 79 48.1
PGSC0003DMG400001700 Solanum tuberosum HOM05D007785 ORTHO05D008997 4.3e-08 61.2 76 44.7
ATR0049G031 Amborella trichopoda HOM05D007785 ORTHO05D008997 5.7e-08 60.8 73 52.1
arahy.Tifrunner.gnm1.ann1.TXA0XA Arachis hypogaea HOM05D007785 ORTHO05D008997 7.4e-08 60.5 73 45.2
arahy.Tifrunner.gnm1.ann1.XHE4AQ Arachis hypogaea HOM05D007785 ORTHO05D008997 7.4e-08 60.5 73 45.2
MELO3C006238.2 Cucumis melo HOM05D007785 ORTHO05D008997 9.7e-08 60.1 89 42.7
CsaV3_3G010180 Cucumis sativus L. HOM05D007785 ORTHO05D008997 1.3e-07 59.7 89 40.4
Oeu024374.1 Olea europaea HOM05D007785 ORTHO05D008997 1.3e-07 59.7 92 42.4
Prupe.2G109900 Prunus persica HOM05D007785 ORTHO05D008997 1.7e-07 59.3 88 40.9
Prupe.5G041600 Prunus persica HOM05D024839 ORTHO05D025594 1.7e-07 59.3 75 48.0
Ciclev10023085m.g Citrus clementina HOM05D007785 ORTHO05D008997 2.2e-07 58.9 72 47.2
Phvul.003G229200 Phaseolus vulgaris HOM05D007785 ORTHO05D008997 2.2e-07 58.9 73 45.2
Gohir.D03G170000 Gossypium hirsutum HOM05D012518 ORTHO05D008997 3.7e-07 58.2 79 44.3
Gorai.003G180300 Gossypium raimondii HOM05D012518 ORTHO05D008997 3.7e-07 58.2 79 44.3
TPR.G28662 Trifolium pratense HOM05D007785 ORTHO05D008997 3.7e-07 58.2 76 47.4
DCAR_025013 Daucus carota HOM05D007785 ORTHO05D008997 6.3e-07 57.4 80 43.8
Dinv43563 Davidia involucrata HOM05D007785 ORTHO05D008997 8.2e-07 57.0 85 43.5
Gohir.D09G192932 Gossypium hirsutum HOM05D012518 ORTHO05D008997 8.2e-07 57.0 85 47.1
MBI04_g22960_MAGBIO Magnolia biondii HOM05D007785 ORTHO05D008997 8.2e-07 57.0 59 52.5
Hund11261 Selenicereus undatus HOM05D018059 ORTHO05D008997 8.2e-07 57.0 78 43.6
VMungo0251G2587 Vigna mungo HOM05D007785 ORTHO05D008997 1.1e-06 56.6 63 50.8
Psat4g078560 Pisum sativum HOM05D007785 ORTHO05D008997 1.8e-06 55.8 74 44.6
vmacro21104 Vaccinium macrocarpon HOM05D008336 ORTHO05D008997 1.8e-06 55.8 97 40.2
AUR62033093 Chenopodium quinoa HOM05D018059 ORTHO05D008997 2.4e-06 55.5 80 43.8
HanXRQChr16g0519261 Helianthus annuus HOM05D007785 ORTHO05D008997 2.4e-06 55.5 69 49.3
DCAR_029543 Daucus carota HOM05D007785 ORTHO05D008997 4.1e-06 54.7 78 46.2
Gorai.006G216000 Gossypium raimondii HOM05D012518 ORTHO05D008997 5.3e-06 54.3 85 45.9
Prupe.2G110100 Prunus persica HOM05D007785 ORTHO05D008997 6.9e-06 53.9 66 48.5
SalBow5G3019 Salvia bowleyana HOM05D007785 ORTHO05D008997 6.9e-06 53.9 77 44.2
Gohir.A09G198400 Gossypium hirsutum HOM05D012518 ORTHO05D008997 9.1e-06 53.5 85 45.9
Sed0016926 Sechium edule HOM05D007785 ORTHO05D008997 9.1e-06 53.5 80 42.5


User provided reference genes

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